Wall clock time and date at job start Tue Mar 31 2020 21:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.86719 * 2 1 4 4 C 1.54317 * 109.88396 * 121.01489 * 2 1 3 5 5 C 1.55166 * 102.93867 * 97.38021 * 4 2 1 6 6 H 1.08999 * 111.00279 * 277.38844 * 5 4 2 7 7 N 1.46902 * 111.00042 * 153.57451 * 5 4 2 8 8 C 1.46906 * 110.99573 * 154.99986 * 7 5 4 9 9 C 1.50699 * 109.46990 * 180.02562 * 8 7 5 10 10 C 1.34669 * 126.59120 * 94.68395 * 9 8 7 11 11 N 1.34124 * 108.01946 * 179.87428 * 10 9 8 12 12 C 1.30496 * 109.25818 * 0.40404 * 11 10 9 13 13 N 1.35041 * 108.69713 * 359.74866 * 12 11 10 14 14 C 1.46505 * 126.39582 * 179.97438 * 13 12 11 15 15 C 1.54906 * 101.58173 * 35.50100 * 5 4 2 16 16 N 1.47023 * 110.01073 * 238.90574 * 2 1 3 17 17 C 1.34782 * 125.64988 * 59.46594 * 16 2 1 18 18 O 1.21279 * 119.99663 * 0.02562 * 17 16 2 19 19 C 1.50695 * 119.99778 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.46799 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99775 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00197 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99891 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00022 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99938 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47358 * 89.99511 * 25 23 21 27 27 H 1.48498 * 109.47073 * 210.00000 * 25 23 21 28 28 H 1.48503 * 109.47228 * 330.00002 * 25 23 21 29 29 H 1.09000 * 109.46584 * 298.98398 * 1 2 3 30 30 H 1.09000 * 109.47132 * 58.98548 * 1 2 3 31 31 H 1.08995 * 109.46747 * 178.98169 * 1 2 3 32 32 H 1.08997 * 110.72336 * 339.01757 * 4 2 1 33 33 H 1.08999 * 110.87446 * 215.81137 * 4 2 1 34 34 H 1.00896 * 111.00219 * 278.95625 * 7 5 4 35 35 H 1.09002 * 109.46991 * 299.99841 * 8 7 5 36 36 H 1.09000 * 109.47202 * 60.00133 * 8 7 5 37 37 H 1.08001 * 125.98777 * 0.02943 * 10 9 8 38 38 H 1.08005 * 125.65402 * 179.78050 * 12 11 10 39 39 H 1.08995 * 109.47545 * 270.00646 * 14 13 12 40 40 H 1.08998 * 109.46926 * 30.00818 * 14 13 12 41 41 H 1.09006 * 109.46773 * 150.00455 * 14 13 12 42 42 H 1.09001 * 110.36435 * 81.82454 * 15 5 4 43 43 H 1.08994 * 110.36753 * 204.15198 * 15 5 4 44 44 H 1.08993 * 109.47256 * 299.99732 * 19 17 16 45 45 H 1.08994 * 109.47568 * 60.00635 * 19 17 16 46 46 H 0.96996 * 119.99727 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3558 -2.1674 0.6943 6 1 1.4506 -2.7737 0.6621 7 7 3.4009 -2.8282 1.4874 8 6 3.2885 -4.2899 1.3925 9 6 4.3742 -4.9317 2.2174 10 6 4.2689 -5.3588 3.4902 11 7 5.4541 -5.8692 3.8560 12 6 6.2923 -5.7668 2.8611 13 7 5.6585 -5.1872 1.8190 14 6 6.2376 -4.8872 0.5071 15 6 2.8618 -1.8472 -0.7343 16 7 2.0332 -0.7135 -1.1830 17 6 1.7792 -0.3852 -2.4653 18 8 1.0810 0.5735 -2.7189 19 6 2.3627 -1.2094 -3.5838 20 16 1.8440 -0.5201 -5.1751 21 6 2.6455 -1.6434 -6.2709 22 1 3.2379 -2.4546 -5.8743 23 6 2.5145 -1.4862 -7.6437 24 7 3.1128 -2.3256 -8.4623 25 14 1.4893 -0.0834 -8.3296 26 1 2.3511 1.1100 -8.5253 27 1 0.9030 -0.4896 -9.6321 28 1 0.3986 0.2447 -7.3766 29 1 -0.3632 0.4980 0.8990 30 1 -0.3633 0.5295 -0.8807 31 1 -0.3632 -1.0275 -0.0183 32 1 1.2910 -0.7886 2.0201 33 1 2.9637 -0.2805 1.6230 34 1 4.3188 -2.5171 1.2068 35 1 2.3143 -4.6044 1.7669 36 1 3.3938 -4.5956 0.3516 37 1 3.3844 -5.3027 4.1074 38 1 7.3221 -6.0922 2.8695 39 1 6.6703 -3.8869 0.5210 40 1 7.0149 -5.6162 0.2778 41 1 5.4584 -4.9356 -0.2537 42 1 3.9135 -1.5617 -0.7091 43 1 2.7165 -2.7060 -1.3896 44 1 3.4505 -1.1925 -3.5182 45 1 2.0095 -2.2371 -3.5003 46 1 3.0216 -2.2155 -9.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:08 Heat of formation + Delta-G solvation = 10.904653 kcal Electronic energy + Delta-G solvation = -26619.487696 eV Core-core repulsion = 22863.522305 eV Total energy + Delta-G solvation = -3755.965391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.97034 -41.34260 -39.03509 -36.42470 -34.81149 -34.70012 -33.42699 -32.08413 -30.36456 -29.44481 -27.87832 -27.77729 -26.80920 -25.72506 -23.55941 -22.36692 -21.82898 -20.86670 -20.40203 -19.60382 -18.22211 -17.92916 -17.36231 -17.15777 -16.92055 -16.61307 -16.17837 -15.95770 -15.68852 -15.46602 -14.94270 -14.85118 -14.53364 -14.39302 -14.27802 -14.11512 -13.94695 -13.72964 -13.64183 -13.51908 -13.36461 -13.16710 -13.07477 -13.02686 -12.99973 -12.62226 -12.36718 -11.94953 -11.88783 -11.59511 -11.19687 -10.96680 -10.89918 -10.56493 -10.48888 -9.80962 -9.54475 -9.23447 -9.03622 -8.54395 -6.25424 0.93409 1.07226 1.29191 1.43225 1.50280 1.50944 1.93557 2.00791 2.22363 2.23465 2.64714 2.84159 3.09732 3.46483 3.51785 3.80243 3.82007 3.93786 3.99304 4.01776 4.07842 4.11358 4.17815 4.26362 4.34976 4.38919 4.41284 4.49491 4.60867 4.67463 4.70435 4.73655 4.79045 4.90915 4.97034 5.05809 5.13819 5.31392 5.43395 5.48105 5.68007 5.81225 5.91863 6.08140 6.26179 6.32507 6.35750 6.91110 7.05952 7.16989 8.57878 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.002595 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.637410 B =10786.634719 C =12722.357683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.065 0.935 4 C -0.100 4.100 5 C 0.090 3.910 6 H 0.104 0.896 7 N -0.663 5.663 8 C 0.139 3.861 9 C -0.025 4.025 10 C -0.033 4.033 11 N -0.539 5.539 12 C 0.178 3.822 13 N -0.457 5.457 14 C 0.061 3.939 15 C 0.065 3.935 16 N -0.608 5.608 17 C 0.547 3.453 18 O -0.557 6.557 19 C -0.101 4.101 20 S -0.176 6.176 21 C -0.526 4.526 22 H 0.063 0.937 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.238 1.238 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.346 0.654 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.172 0.828 38 H 0.232 0.768 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -4.446 24.399 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.083 0.917 4 C -0.139 4.139 5 C -0.021 4.021 6 H 0.122 0.878 7 N -0.294 5.294 8 C 0.009 3.991 9 C -0.141 4.141 10 C -0.182 4.182 11 N -0.258 5.258 12 C -0.104 4.104 13 N -0.140 5.140 14 C -0.081 4.081 15 C -0.059 4.059 16 N -0.343 5.343 17 C 0.334 3.666 18 O -0.435 6.435 19 C -0.252 4.252 20 S 0.051 5.949 21 C -0.674 4.674 22 H 0.082 0.918 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.734 3.266 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.162 1.162 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.166 0.834 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.189 0.811 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.946 -3.361 24.981 25.377 hybrid contribution 0.933 -0.649 -2.334 2.596 sum 3.880 -4.009 22.646 23.323 Atomic orbital electron populations 1.22104 0.94709 1.02366 1.02482 1.21761 0.94893 0.96408 0.84296 0.91661 1.22644 1.02900 0.93427 0.94889 1.22693 0.95631 0.95916 0.87893 0.87844 1.60578 1.07012 1.04800 1.57028 1.20353 0.95729 0.86472 0.96527 1.21223 0.87092 1.08469 0.97272 1.22313 0.97232 1.04365 0.94294 1.70254 1.02739 1.22872 1.29955 1.25519 1.00901 1.01097 0.82913 1.45536 1.09719 1.44857 1.13849 1.22346 1.00856 1.04225 0.80627 1.23376 0.95551 0.88861 0.98118 1.48366 1.50764 1.31270 1.03886 1.19642 0.80030 0.84139 0.82741 1.90682 1.39479 1.29953 1.83430 1.23200 1.04755 1.02872 0.94393 1.84775 1.68497 1.42851 0.98783 1.22415 1.35712 1.15511 0.93769 0.91848 1.25525 0.95777 0.98261 0.96268 1.70002 1.43334 1.37786 1.04238 0.85903 0.80975 0.79807 0.79931 1.18705 1.18299 1.16171 0.89359 0.94520 0.92102 0.87838 0.89394 0.83443 0.87652 0.93260 0.81063 0.75203 0.89127 0.87413 0.89288 0.89943 0.90137 0.87402 0.87341 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 9.06 71.98 0.65 -2.61 16 2 C 0.13 2.54 3.49 45.34 0.16 2.70 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 4 C -0.10 -1.19 6.19 31.78 0.20 -1.00 16 5 C 0.09 0.99 3.38 46.31 0.16 1.15 16 6 H 0.10 1.12 7.83 -2.39 -0.02 1.10 16 7 N -0.66 -6.56 6.40 -488.38 -3.13 -9.68 16 8 C 0.14 1.41 5.78 85.56 0.49 1.90 16 9 C -0.03 -0.36 6.47 40.95 0.26 -0.10 16 10 C -0.03 -0.63 11.79 83.52 0.98 0.36 16 11 N -0.54 -11.52 11.25 -200.31 -2.25 -13.77 16 12 C 0.18 2.62 12.56 180.26 2.26 4.89 16 13 N -0.46 -5.55 3.15 -537.88 -1.70 -7.24 16 14 C 0.06 0.33 11.01 127.77 1.41 1.74 16 15 C 0.07 1.00 6.29 86.85 0.55 1.55 16 16 N -0.61 -14.53 3.08 -788.07 -2.43 -16.96 16 17 C 0.55 18.87 7.65 87.65 0.67 19.54 16 18 O -0.56 -23.81 14.77 -3.03 -0.04 -23.86 16 19 C -0.10 -3.76 5.16 71.23 0.37 -3.39 16 20 S -0.18 -8.77 18.55 -56.49 -1.05 -9.82 16 21 C -0.53 -30.01 10.04 67.95 0.68 -29.32 16 22 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.92 -54.76 13.97 21.65 0.30 -54.46 16 25 Si 0.91 44.41 27.74 68.60 1.90 46.32 16 26 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.04 6.77 -2.39 -0.02 1.02 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 0.99 7.83 -2.39 -0.02 0.97 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.35 3.20 8.18 -89.70 -0.73 2.47 16 35 H 0.11 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.05 0.45 7.38 -2.39 -0.02 0.43 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.09 0.46 7.30 -2.38 -0.02 0.44 16 42 H 0.08 1.08 7.75 -2.39 -0.02 1.06 16 43 H 0.08 1.23 7.48 -2.39 -0.02 1.21 16 44 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 45 H 0.11 3.70 7.85 -2.40 -0.02 3.68 16 46 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.75 390.14 1.13 -77.62 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.21 Total: 11.26 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 9.31 Total: 0.60 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -9.20 Total: -102.12 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -78.75 1.13 -77.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.522 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds