Wall clock time and date at job start Tue Mar 31 2020 21:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87480 * 2 1 4 4 C 1.54325 * 109.88119 * 121.01527 * 2 1 3 5 5 C 1.55163 * 102.94109 * 97.37852 * 4 2 1 6 6 H 1.09006 * 111.00202 * 277.42795 * 5 4 2 7 7 N 1.46900 * 111.00819 * 153.57511 * 5 4 2 8 8 C 1.46896 * 111.00052 * 154.99674 * 7 5 4 9 9 C 1.50703 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.39869 * 125.89839 * 94.71655 * 9 8 7 11 11 C 1.35309 * 107.92033 * 179.86070 * 10 9 8 12 12 N 1.34949 * 107.75010 * 0.40144 * 11 10 9 13 13 C 1.46497 * 126.04200 * 179.75186 * 12 11 10 14 14 N 1.30838 * 125.90041 * 275.02525 * 9 8 7 15 15 C 1.54910 * 101.58002 * 35.49973 * 5 4 2 16 16 N 1.47018 * 109.88094 * 238.98427 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.32438 * 16 2 1 18 18 O 1.21283 * 120.00001 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99986 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47206 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00294 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00011 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00080 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00045 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47172 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47571 * 119.99411 * 25 23 21 28 28 H 1.48502 * 109.46841 * 239.99668 * 25 23 21 29 29 H 1.09005 * 109.46795 * 299.30113 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.29385 * 1 2 3 31 31 H 1.08995 * 109.47480 * 179.29901 * 1 2 3 32 32 H 1.09000 * 110.72188 * 215.73439 * 4 2 1 33 33 H 1.08993 * 110.72373 * 338.84202 * 4 2 1 34 34 H 1.00906 * 110.99657 * 31.04453 * 7 5 4 35 35 H 1.08996 * 109.47469 * 300.00375 * 8 7 5 36 36 H 1.09003 * 109.46744 * 60.00321 * 8 7 5 37 37 H 1.08007 * 126.03804 * 359.97438 * 10 9 8 38 38 H 1.08005 * 126.12994 * 180.14591 * 11 10 9 39 39 H 1.09001 * 109.46817 * 270.01599 * 13 12 11 40 40 H 1.08997 * 109.47445 * 30.01532 * 13 12 11 41 41 H 1.09004 * 109.47321 * 150.02327 * 13 12 11 42 42 H 1.09001 * 110.36566 * 81.83216 * 15 5 4 43 43 H 1.09004 * 110.36967 * 204.04279 * 15 5 4 44 44 H 1.08999 * 109.47418 * 300.00317 * 19 17 16 45 45 H 1.09004 * 109.47129 * 59.99941 * 19 17 16 46 46 H 0.97002 * 120.00374 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3556 -2.1674 0.6945 6 1 1.4502 -2.7735 0.6616 7 7 3.4007 -2.8284 1.4875 8 6 3.2881 -4.2900 1.3927 9 6 4.3738 -4.9319 2.2176 10 6 4.2481 -5.3710 3.5396 11 6 5.4385 -5.8889 3.9212 12 7 6.2900 -5.7734 2.8807 13 6 7.6903 -6.2035 2.8610 14 7 5.5983 -5.1696 1.8227 15 6 2.8617 -1.8473 -0.7342 16 7 2.0299 -0.7124 -1.1849 17 6 1.7716 -0.3836 -2.4662 18 8 1.0718 0.5746 -2.7171 19 6 2.3523 -1.2068 -3.5871 20 16 1.8281 -0.5171 -5.1763 21 6 2.6257 -1.6400 -6.2752 22 1 3.2202 -2.4509 -5.8810 23 6 2.4908 -1.4818 -7.6475 24 7 1.7667 -0.4932 -8.1280 25 14 3.3358 -2.6726 -8.8125 26 1 4.0830 -3.6874 -8.0269 27 1 2.3164 -3.3496 -9.6538 28 1 4.2803 -1.9272 -9.6829 29 1 -0.3633 0.5030 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3634 -1.0275 -0.0126 32 1 2.9642 -0.2794 1.6202 33 1 1.2919 -0.7859 2.0213 34 1 3.3708 -2.5251 2.4494 35 1 2.3140 -4.6045 1.7670 36 1 3.3934 -4.5957 0.3517 37 1 3.3577 -5.3093 4.1477 38 1 5.6676 -6.3145 4.8871 39 1 8.3267 -5.3843 3.1958 40 1 7.8175 -7.0576 3.5260 41 1 7.9686 -6.4883 1.8463 42 1 3.9134 -1.5620 -0.7090 43 1 2.7182 -2.7068 -1.3890 44 1 3.4404 -1.1891 -3.5249 45 1 2.0003 -2.2350 -3.5029 46 1 1.6721 -0.3828 -9.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331961886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:52 Heat of formation + Delta-G solvation = 25.534318 kcal Electronic energy + Delta-G solvation = -26125.340444 eV Core-core repulsion = 22370.009443 eV Total energy + Delta-G solvation = -3755.331001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03353 -41.24907 -38.95268 -36.49915 -34.60659 -34.05748 -33.31741 -31.19334 -30.75172 -30.22963 -27.96891 -27.67619 -26.85487 -25.45222 -23.33696 -21.98891 -21.70226 -20.74574 -20.32629 -19.55918 -18.09682 -17.80277 -17.29364 -16.90505 -16.67807 -16.38955 -16.27397 -16.05161 -15.72880 -15.10554 -14.86325 -14.67293 -14.52705 -14.44203 -14.30238 -14.07013 -13.89513 -13.67937 -13.34479 -13.25716 -13.17883 -13.06161 -12.94687 -12.91801 -12.74004 -12.59065 -12.07468 -12.00223 -11.72651 -11.59768 -11.45198 -11.17336 -10.88102 -10.30837 -10.24004 -9.73765 -9.50880 -9.37692 -8.69492 -8.36457 -6.14967 1.00745 1.22488 1.39993 1.42896 1.55818 1.56619 1.72069 1.81776 2.07965 2.25509 2.97389 3.10650 3.32343 3.44355 3.59740 3.66752 3.88513 3.99080 4.05420 4.19032 4.21167 4.24706 4.34578 4.39192 4.42805 4.45014 4.47431 4.61158 4.65898 4.71198 4.74905 4.83456 4.88648 4.92361 4.93782 5.01289 5.10211 5.21016 5.31335 5.40023 5.51406 5.72160 5.98561 6.18332 6.22596 6.38007 6.45909 6.85552 7.04571 7.13230 8.73179 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.002497 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.087480 B =11210.239696 C =13693.685684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.064 0.936 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.078 0.922 7 N -0.673 5.673 8 C 0.142 3.858 9 C 0.063 3.937 10 C -0.283 4.283 11 C 0.057 3.943 12 N -0.386 5.386 13 C 0.093 3.907 14 N -0.328 5.328 15 C 0.104 3.896 16 N -0.613 5.613 17 C 0.548 3.452 18 O -0.560 6.560 19 C -0.121 4.121 20 S -0.145 6.145 21 C -0.546 4.546 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 1.000 3.000 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.359 0.641 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.166 0.834 38 H 0.211 0.789 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -13.318 32.822 36.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.021 4.021 6 H 0.096 0.904 7 N -0.308 5.308 8 C 0.012 3.988 9 C -0.104 4.104 10 C -0.312 4.312 11 C -0.089 4.089 12 N -0.168 5.168 13 C -0.047 4.047 14 N -0.152 5.152 15 C -0.019 4.019 16 N -0.348 5.348 17 C 0.336 3.664 18 O -0.438 6.438 19 C -0.272 4.272 20 S 0.082 5.918 21 C -0.694 4.694 22 H 0.097 0.903 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.182 1.182 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.183 0.817 38 H 0.228 0.772 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.857 -11.727 30.810 33.889 hybrid contribution -0.029 -1.584 0.140 1.590 sum 7.828 -13.311 30.950 34.588 Atomic orbital electron populations 1.22114 0.94536 1.02371 1.02601 1.21704 0.94985 0.96371 0.84354 0.91754 1.22863 1.03266 0.93268 0.95531 1.22476 0.92777 0.95166 0.91710 0.90440 1.60093 1.48847 1.04880 1.16955 1.20262 0.93375 0.86638 0.98567 1.22370 0.93104 0.99499 0.95385 1.21730 1.00752 1.12450 0.96308 1.23192 0.90111 1.00609 0.95026 1.48916 1.11790 1.46625 1.09490 1.22140 0.75425 1.01891 1.05258 1.77349 1.07187 1.18477 1.12176 1.22534 0.95032 0.88020 0.96345 1.48542 1.50853 1.31395 1.03998 1.19654 0.79903 0.84096 0.82711 1.90667 1.39531 1.30039 1.83550 1.23316 1.04291 1.02890 0.96734 1.85494 1.68207 1.42567 0.95523 1.23203 1.36434 1.16008 0.93733 0.90254 1.26136 0.95801 0.97921 0.99255 1.70185 1.38890 1.31390 1.14203 0.84892 0.77957 0.77657 0.77352 1.18247 1.19655 1.19762 0.88919 0.94709 0.92108 0.88797 0.86764 0.81991 0.90718 0.90990 0.81675 0.77209 0.89918 0.86343 0.90057 0.90667 0.90996 0.88291 0.87952 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.05 71.98 0.65 -3.07 16 2 C 0.13 3.04 3.49 45.34 0.16 3.20 16 3 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -1.54 5.90 31.79 0.19 -1.36 16 5 C 0.09 1.41 3.38 46.31 0.16 1.57 16 6 H 0.08 1.12 7.83 -2.38 -0.02 1.10 16 7 N -0.67 -9.98 6.40 -488.39 -3.13 -13.10 16 8 C 0.14 2.21 6.11 85.56 0.52 2.73 16 9 C 0.06 1.15 6.73 43.10 0.29 1.44 16 10 C -0.28 -3.72 10.74 21.99 0.24 -3.48 16 11 C 0.06 0.61 11.49 83.54 0.96 1.57 16 12 N -0.39 -5.98 4.01 -369.57 -1.48 -7.46 16 13 C 0.09 0.70 11.47 127.77 1.47 2.16 16 14 N -0.33 -7.48 12.58 -47.38 -0.60 -8.08 16 15 C 0.10 2.46 6.41 86.79 0.56 3.01 16 16 N -0.61 -18.50 3.09 -787.23 -2.43 -20.93 16 17 C 0.55 22.63 7.65 87.66 0.67 23.30 16 18 O -0.56 -27.64 14.75 -3.04 -0.04 -27.68 16 19 C -0.12 -5.34 5.18 71.24 0.37 -4.97 16 20 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 21 C -0.55 -32.46 9.50 67.95 0.65 -31.81 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.80 5.49 84.86 0.47 1.26 16 24 N -0.91 -57.18 13.22 21.65 0.29 -56.90 16 25 Si 1.00 44.99 29.55 68.60 2.03 47.01 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.03 1.12 6.74 -2.39 -0.02 1.10 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 0.96 7.83 -2.39 -0.02 0.94 16 34 H 0.36 4.05 8.43 -89.69 -0.76 3.30 16 35 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.75 7.50 -2.38 -0.02 1.73 16 44 H 0.10 4.11 8.14 -2.40 -0.02 4.10 16 45 H 0.10 4.16 7.86 -2.39 -0.02 4.14 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -86.24 396.01 1.02 -85.22 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.22 Total: 15.97 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 7.34 Total: -4.44 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -7.35 Total: -106.47 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -86.24 1.02 -85.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.754 kcal (2) G-P(sol) polarization free energy of solvation -86.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds