Wall clock time and date at job start Tue Mar 31 2020 21:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87155 * 2 1 4 4 C 1.54329 * 110.01316 * 238.90029 * 2 1 3 5 5 C 1.55156 * 102.94072 * 262.70532 * 4 2 1 6 6 H 1.08996 * 111.00334 * 82.60999 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 C 1.39876 * 125.89965 * 95.00031 * 9 8 7 11 11 C 1.35314 * 107.92105 * 179.97438 * 10 9 8 12 12 N 1.34954 * 107.74653 * 0.02562 * 11 10 9 13 13 C 1.46501 * 126.03588 * 180.02562 * 12 11 10 14 14 N 1.30841 * 125.90045 * 274.69471 * 9 8 7 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88438 * 121.01644 * 2 1 3 17 17 C 1.34774 * 125.64574 * 300.59587 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99946 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99679 * 359.97438 * 23 21 20 26 26 H 1.48490 * 109.47080 * 90.00385 * 25 23 21 27 27 H 1.48506 * 109.46635 * 210.00589 * 25 23 21 28 28 H 1.48499 * 109.47138 * 329.99770 * 25 23 21 29 29 H 1.08998 * 109.47205 * 300.43873 * 1 2 3 30 30 H 1.09003 * 109.47289 * 60.43837 * 1 2 3 31 31 H 1.08998 * 109.47009 * 180.44211 * 1 2 3 32 32 H 1.08998 * 110.71315 * 21.06706 * 4 2 1 33 33 H 1.08999 * 110.71847 * 144.16172 * 4 2 1 34 34 H 1.00900 * 111.00113 * 328.95872 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.08000 * 126.03936 * 359.97438 * 10 9 8 38 38 H 1.08000 * 126.13053 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.47006 * 90.00302 * 13 12 11 40 40 H 1.09003 * 109.46805 * 210.00487 * 13 12 11 41 41 H 1.09003 * 109.46869 * 330.00113 * 13 12 11 42 42 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 43 43 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 44 44 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 45 45 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 46 46 H 0.97001 * 119.99197 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3574 -2.1680 -0.6902 6 1 1.4522 -2.7743 -0.6598 7 7 3.4046 -2.8297 -1.4800 8 6 3.2920 -4.2912 -1.3841 9 6 4.3805 -4.9338 -2.2045 10 6 5.6215 -5.3664 -1.7257 11 6 6.3119 -5.8852 -2.7675 12 7 5.5355 -5.7840 -3.8667 13 6 5.8922 -6.2252 -5.2174 14 7 4.3258 -5.1886 -3.4867 15 6 2.8643 -1.8433 0.7395 16 7 2.0300 -0.7124 1.1849 17 6 1.7729 -0.3828 2.4662 18 8 1.0744 0.5763 2.7172 19 6 2.3545 -1.2053 3.5871 20 16 1.8319 -0.5144 5.1764 21 6 2.6303 -1.6368 6.2752 22 1 3.2236 -2.4486 5.8809 23 6 2.4959 -1.4783 7.6476 24 7 3.0927 -2.3165 8.4685 25 14 1.4691 -0.0746 8.3295 26 1 0.0635 -0.5241 8.4941 27 1 2.0132 0.3419 9.6470 28 1 1.5148 1.0741 7.3896 29 1 -0.3633 0.5206 0.8860 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 1.2961 -0.7905 -2.0199 33 1 2.9667 -0.2789 -1.6180 34 1 3.3773 -2.5272 -2.4422 35 1 3.3946 -4.5960 -0.3426 36 1 2.3188 -4.6061 -1.7606 37 1 5.9675 -5.2984 -0.7049 38 1 7.3061 -6.3051 -2.7266 39 1 5.5811 -7.2606 -5.3554 40 1 5.3897 -5.5939 -5.9503 41 1 6.9713 -6.1491 -5.3513 42 1 3.9148 -1.5534 0.7154 43 1 2.7219 -2.7016 1.3961 44 1 2.0021 -2.2334 3.5040 45 1 3.4425 -1.1880 3.5239 46 1 2.9990 -2.2054 9.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:55 Heat of formation + Delta-G solvation = 52.125250 kcal Electronic energy + Delta-G solvation = -26133.377559 eV Core-core repulsion = 22379.199627 eV Total energy + Delta-G solvation = -3754.177932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45851 -40.12220 -37.78512 -35.67841 -33.45580 -32.40677 -32.19059 -30.59217 -29.95883 -28.81247 -27.39153 -25.94158 -25.57435 -24.81857 -22.28767 -21.46969 -20.87374 -20.02470 -19.05331 -17.69092 -17.34571 -16.68163 -16.36756 -15.82521 -15.40531 -15.36085 -14.96879 -14.78321 -14.66024 -14.13818 -14.05803 -13.96658 -13.49608 -13.22371 -13.11072 -12.96379 -12.85358 -12.79451 -12.71028 -12.43582 -12.35187 -11.97647 -11.79352 -11.30201 -11.24118 -11.15368 -10.98355 -10.95973 -10.73598 -10.55664 -9.82176 -9.64999 -9.41125 -8.96989 -8.88165 -8.79575 -8.49518 -8.45145 -6.87773 -6.25553 -3.96740 1.54391 2.15675 2.43577 2.74183 3.01987 3.22557 3.35976 3.53670 3.62072 3.91693 4.10707 4.25913 4.36268 4.42113 4.47082 4.62086 4.69215 4.75898 4.80505 4.88215 4.94176 5.07857 5.13513 5.18543 5.22817 5.24380 5.37507 5.46399 5.50579 5.57757 5.58320 5.62527 5.72416 5.76504 5.81767 5.86463 6.02936 6.08137 6.26830 6.32523 6.52310 6.67017 6.67398 6.98063 7.39830 7.67427 7.97674 8.45422 8.52035 9.20795 10.83660 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002293 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.049194 B =12209.151249 C =14044.790896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.074 3.926 6 H 0.067 0.933 7 N -0.670 5.670 8 C 0.140 3.860 9 C 0.078 3.922 10 C -0.251 4.251 11 C 0.049 3.951 12 N -0.378 5.378 13 C 0.102 3.898 14 N -0.296 5.296 15 C 0.111 3.889 16 N -0.621 5.621 17 C 0.549 3.451 18 O -0.517 6.517 19 C -0.117 4.117 20 S -0.143 6.143 21 C -0.519 4.519 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.349 0.651 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.151 0.849 38 H 0.174 0.826 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -6.768 -29.507 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.085 0.915 7 N -0.303 5.303 8 C 0.009 3.991 9 C -0.088 4.088 10 C -0.280 4.280 11 C -0.097 4.097 12 N -0.161 5.161 13 C -0.039 4.039 14 N -0.119 5.119 15 C -0.013 4.013 16 N -0.358 5.358 17 C 0.337 3.663 18 O -0.392 6.392 19 C -0.268 4.268 20 S 0.083 5.917 21 C -0.667 4.667 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.168 0.832 38 H 0.191 0.809 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.552 -5.325 -29.572 30.257 hybrid contribution 0.448 -1.135 0.320 1.262 sum 4.000 -6.461 -29.253 30.223 Atomic orbital electron populations 1.22166 0.94772 1.02249 1.03038 1.21403 0.94665 0.96375 0.83953 0.90695 1.22911 1.02114 0.94773 0.97021 1.22709 0.92644 0.94471 0.93813 0.91466 1.60309 1.48710 1.04767 1.16531 1.20311 0.93210 0.86778 0.98771 1.22114 0.96354 0.98874 0.91454 1.21450 0.95506 1.10390 1.00667 1.22562 0.98267 1.02068 0.86766 1.48462 1.11803 1.47640 1.08160 1.21841 1.01645 1.00780 0.79651 1.77267 1.02466 1.17988 1.14202 1.22327 0.95562 0.89294 0.94093 1.48500 1.51567 1.30998 1.04759 1.19940 0.80114 0.84708 0.81515 1.90682 1.37590 1.28255 1.82654 1.23265 1.04162 1.02347 0.97006 1.84767 1.68773 1.42459 0.95694 1.22315 1.36167 1.15393 0.92805 0.89373 1.24713 0.94765 0.96048 0.95826 1.69943 1.42139 1.36194 1.03467 0.86735 0.81002 0.84057 0.80062 1.19248 1.19984 1.15912 0.90617 0.92083 0.92680 0.90041 0.89620 0.83229 0.88540 0.93436 0.83176 0.80921 0.90858 0.89381 0.89455 0.90070 0.90518 0.88686 0.88520 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.07 37.16 0.34 -1.60 16 2 C 0.14 1.65 3.49 -66.95 -0.23 1.41 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -1.08 5.90 -24.89 -0.15 -1.23 16 5 C 0.07 0.65 3.40 -65.45 -0.22 0.43 16 6 H 0.07 0.59 7.83 -51.93 -0.41 0.19 16 7 N -0.67 -5.62 6.40 -105.61 -0.68 -6.30 16 8 C 0.14 1.19 6.11 -4.98 -0.03 1.16 16 9 C 0.08 0.78 6.73 -82.40 -0.55 0.22 16 10 C -0.25 -2.26 10.74 -40.01 -0.43 -2.69 16 11 C 0.05 0.36 11.49 -17.22 -0.20 0.16 16 12 N -0.38 -3.09 4.01 -68.16 -0.27 -3.36 16 13 C 0.10 0.40 11.47 59.85 0.69 1.08 16 14 N -0.30 -3.13 12.58 33.67 0.42 -2.70 16 15 C 0.11 1.25 6.40 -2.42 -0.02 1.24 16 16 N -0.62 -8.82 3.08 -162.88 -0.50 -9.32 16 17 C 0.55 10.28 7.65 -10.98 -0.08 10.20 16 18 O -0.52 -11.42 14.75 5.56 0.08 -11.34 16 19 C -0.12 -2.36 5.16 36.01 0.19 -2.18 16 20 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 21 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 22 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 23 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 25 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.24 -6.05 6.74 56.52 0.38 -5.66 16 29 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.35 2.80 8.43 -39.29 -0.33 2.46 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.39 8.09 -51.93 -0.42 -0.02 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 44 H 0.09 1.79 7.85 -51.92 -0.41 1.38 16 45 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -36.16 393.27 -8.80 -44.97 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.36 Total: 0.33 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.49 Total: -3.85 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.25 Total: -47.64 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.16 -8.80 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.091 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds