Wall clock time and date at job start Tue Mar 31 2020 21:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87155 * 2 1 4 4 C 1.54329 * 110.01316 * 238.90029 * 2 1 3 5 5 C 1.55156 * 102.94072 * 262.70532 * 4 2 1 6 6 H 1.08996 * 111.00334 * 82.60999 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 C 1.39876 * 125.89965 * 95.00031 * 9 8 7 11 11 C 1.35314 * 107.92105 * 179.97438 * 10 9 8 12 12 N 1.34954 * 107.74653 * 0.02562 * 11 10 9 13 13 C 1.46501 * 126.03588 * 180.02562 * 12 11 10 14 14 N 1.30841 * 125.90045 * 274.69471 * 9 8 7 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88438 * 121.01644 * 2 1 3 17 17 C 1.34774 * 125.64574 * 300.59587 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99946 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99679 * 359.97438 * 23 21 20 26 26 H 1.48490 * 109.47080 * 90.00385 * 25 23 21 27 27 H 1.48506 * 109.46635 * 210.00589 * 25 23 21 28 28 H 1.48499 * 109.47138 * 329.99770 * 25 23 21 29 29 H 1.08998 * 109.47205 * 300.43873 * 1 2 3 30 30 H 1.09003 * 109.47289 * 60.43837 * 1 2 3 31 31 H 1.08998 * 109.47009 * 180.44211 * 1 2 3 32 32 H 1.08998 * 110.71315 * 21.06706 * 4 2 1 33 33 H 1.08999 * 110.71847 * 144.16172 * 4 2 1 34 34 H 1.00900 * 111.00113 * 328.95872 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.08000 * 126.03936 * 359.97438 * 10 9 8 38 38 H 1.08000 * 126.13053 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.47006 * 90.00302 * 13 12 11 40 40 H 1.09003 * 109.46805 * 210.00487 * 13 12 11 41 41 H 1.09003 * 109.46869 * 330.00113 * 13 12 11 42 42 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 43 43 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 44 44 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 45 45 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 46 46 H 0.97001 * 119.99197 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3574 -2.1680 -0.6902 6 1 1.4522 -2.7743 -0.6598 7 7 3.4046 -2.8297 -1.4800 8 6 3.2920 -4.2912 -1.3841 9 6 4.3805 -4.9338 -2.2045 10 6 5.6215 -5.3664 -1.7257 11 6 6.3119 -5.8852 -2.7675 12 7 5.5355 -5.7840 -3.8667 13 6 5.8922 -6.2252 -5.2174 14 7 4.3258 -5.1886 -3.4867 15 6 2.8643 -1.8433 0.7395 16 7 2.0300 -0.7124 1.1849 17 6 1.7729 -0.3828 2.4662 18 8 1.0744 0.5763 2.7172 19 6 2.3545 -1.2053 3.5871 20 16 1.8319 -0.5144 5.1764 21 6 2.6303 -1.6368 6.2752 22 1 3.2236 -2.4486 5.8809 23 6 2.4959 -1.4783 7.6476 24 7 3.0927 -2.3165 8.4685 25 14 1.4691 -0.0746 8.3295 26 1 0.0635 -0.5241 8.4941 27 1 2.0132 0.3419 9.6470 28 1 1.5148 1.0741 7.3896 29 1 -0.3633 0.5206 0.8860 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 1.2961 -0.7905 -2.0199 33 1 2.9667 -0.2789 -1.6180 34 1 3.3773 -2.5272 -2.4422 35 1 3.3946 -4.5960 -0.3426 36 1 2.3188 -4.6061 -1.7606 37 1 5.9675 -5.2984 -0.7049 38 1 7.3061 -6.3051 -2.7266 39 1 5.5811 -7.2606 -5.3554 40 1 5.3897 -5.5939 -5.9503 41 1 6.9713 -6.1491 -5.3513 42 1 3.9148 -1.5534 0.7154 43 1 2.7219 -2.7016 1.3961 44 1 2.0021 -2.2334 3.5040 45 1 3.4425 -1.1880 3.5239 46 1 2.9990 -2.2054 9.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331961887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:55 Heat of formation + Delta-G solvation = 26.466305 kcal Electronic energy + Delta-G solvation = -26134.490214 eV Core-core repulsion = 22379.199627 eV Total energy + Delta-G solvation = -3755.290587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04937 -41.28185 -38.97039 -36.51321 -34.66794 -34.07029 -33.35115 -31.24028 -30.71353 -30.27435 -27.99971 -27.83628 -26.85541 -25.44092 -23.36270 -22.03460 -21.70422 -20.72260 -20.36097 -19.57077 -18.14273 -17.82376 -17.32180 -17.11397 -16.67257 -16.40845 -16.15111 -15.97967 -15.74599 -15.36490 -14.92305 -14.86474 -14.58477 -14.49327 -14.38275 -14.09885 -13.70111 -13.46875 -13.42969 -13.34389 -13.32789 -13.08969 -13.02217 -12.95264 -12.85234 -12.58750 -12.06869 -12.02508 -11.85793 -11.67754 -11.51098 -11.16636 -10.91087 -10.53686 -10.26044 -9.74322 -9.49594 -9.41687 -9.00051 -8.50920 -6.21943 0.94868 0.97227 1.31609 1.45672 1.53501 1.54113 1.69561 1.80070 2.06435 2.25625 2.68163 2.87053 3.14568 3.42533 3.54972 3.67070 3.83693 3.94378 4.02426 4.17597 4.20158 4.24322 4.33195 4.38582 4.42099 4.45226 4.46239 4.57852 4.64241 4.71670 4.74341 4.87622 4.89997 4.90689 4.97770 5.02166 5.09037 5.16773 5.29697 5.48895 5.70488 5.71610 5.96200 6.12036 6.19490 6.32697 6.40425 6.77886 6.94038 7.09471 8.61463 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002293 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.049194 B =12209.151249 C =14044.790896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 H 0.068 0.932 4 C -0.114 4.114 5 C 0.086 3.914 6 H 0.073 0.927 7 N -0.668 5.668 8 C 0.143 3.857 9 C 0.066 3.934 10 C -0.279 4.279 11 C 0.056 3.944 12 N -0.382 5.382 13 C 0.093 3.907 14 N -0.329 5.329 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.549 3.451 18 O -0.558 6.558 19 C -0.103 4.103 20 S -0.173 6.173 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.046 3.954 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.238 1.238 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.354 0.646 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.153 0.847 38 H 0.209 0.791 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -6.954 -31.988 33.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.024 4.024 6 H 0.091 0.909 7 N -0.302 5.302 8 C 0.013 3.987 9 C -0.100 4.100 10 C -0.309 4.309 11 C -0.090 4.090 12 N -0.164 5.164 13 C -0.046 4.046 14 N -0.154 5.154 15 C -0.019 4.019 16 N -0.346 5.346 17 C 0.337 3.663 18 O -0.436 6.436 19 C -0.254 4.254 20 S 0.053 5.947 21 C -0.675 4.675 22 H 0.080 0.920 23 C -0.160 4.160 24 N -0.554 5.554 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.182 1.182 28 H -0.162 1.162 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.174 0.826 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.171 0.829 38 H 0.225 0.775 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.962 -5.541 -32.113 32.828 hybrid contribution 0.440 -1.196 0.897 1.559 sum 4.402 -6.737 -31.216 32.237 Atomic orbital electron populations 1.22111 0.94596 1.02315 1.02657 1.21674 0.94885 0.96425 0.84119 0.91378 1.22866 1.03176 0.93513 0.95682 1.22550 0.92712 0.95001 0.92187 0.90888 1.60222 1.48407 1.04728 1.16796 1.20284 0.93105 0.86697 0.98653 1.22307 0.96937 0.99162 0.91561 1.21686 0.95872 1.11833 1.01508 1.23115 0.99213 1.00606 0.86044 1.48831 1.11131 1.46878 1.09606 1.22168 1.03497 1.01202 0.77782 1.77185 1.04191 1.19413 1.14623 1.22557 0.95268 0.88231 0.95887 1.48441 1.50686 1.31489 1.03975 1.19584 0.79978 0.84108 0.82663 1.90667 1.39573 1.29873 1.83508 1.23219 1.04823 1.02909 0.94413 1.84672 1.68862 1.42461 0.98663 1.22439 1.35935 1.15322 0.93831 0.91975 1.25559 0.95855 0.98374 0.96198 1.70017 1.43407 1.37813 1.04124 0.85869 0.79661 0.81004 0.79849 1.18658 1.18218 1.16182 0.94266 0.89224 0.92283 0.87493 0.88649 0.82629 0.88552 0.93267 0.82934 0.77471 0.89839 0.89427 0.86645 0.89867 0.90467 0.87383 0.87474 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.07 71.98 0.65 -2.85 16 2 C 0.13 2.88 3.49 45.34 0.16 3.03 16 3 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -1.55 5.90 31.78 0.19 -1.37 16 5 C 0.09 1.31 3.40 46.38 0.16 1.47 16 6 H 0.07 1.09 7.83 -2.39 -0.02 1.07 16 7 N -0.67 -9.89 6.40 -488.03 -3.12 -13.01 16 8 C 0.14 2.28 6.11 85.56 0.52 2.80 16 9 C 0.07 1.24 6.73 43.10 0.29 1.53 16 10 C -0.28 -4.75 10.74 21.99 0.24 -4.52 16 11 C 0.06 0.72 11.49 83.54 0.96 1.68 16 12 N -0.38 -5.57 4.01 -369.56 -1.48 -7.05 16 13 C 0.09 0.52 11.47 127.77 1.47 1.99 16 14 N -0.33 -6.64 12.58 -47.38 -0.60 -7.23 16 15 C 0.10 2.18 6.40 86.93 0.56 2.73 16 16 N -0.61 -16.70 3.08 -787.62 -2.43 -19.13 16 17 C 0.55 20.49 7.65 87.66 0.67 21.16 16 18 O -0.56 -24.94 14.75 -3.02 -0.04 -24.98 16 19 C -0.10 -4.14 5.16 71.24 0.37 -3.77 16 20 S -0.17 -9.02 18.55 -56.49 -1.05 -10.06 16 21 C -0.53 -31.27 10.04 67.95 0.68 -30.59 16 22 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.71 5.50 84.86 0.47 3.18 16 24 N -0.92 -56.25 13.97 21.65 0.30 -55.95 16 25 Si 0.91 45.66 27.74 68.60 1.90 47.56 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 29 H 0.04 1.17 6.74 -2.39 -0.02 1.15 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.01 7.83 -2.39 -0.02 0.99 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.35 4.85 8.43 -89.69 -0.76 4.10 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.08 1.63 7.48 -2.39 -0.02 1.61 16 44 H 0.11 4.05 7.85 -2.39 -0.02 4.03 16 45 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 46 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -79.90 393.27 1.04 -78.85 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.18 Total: 14.52 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 7.37 Total: -3.51 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -7.32 Total: -102.37 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.04 Total: -24.98 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.06 kcal Total: -79.90 1.04 -78.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.319 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds