Wall clock time and date at job start Tue Mar 31 2020 21:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 6 6 H 1.09003 * 111.00366 * 82.57268 * 5 4 2 7 7 N 1.46900 * 111.00975 * 206.42568 * 5 4 2 8 8 C 1.46894 * 111.00034 * 205.00113 * 7 5 4 9 9 C 1.50703 * 109.47172 * 179.97438 * 8 7 5 10 10 C 1.39868 * 125.89395 * 94.99509 * 9 8 7 11 11 C 1.35316 * 107.91933 * 180.02562 * 10 9 8 12 12 N 1.34944 * 107.74845 * 0.02562 * 11 10 9 13 13 C 1.46499 * 126.04395 * 179.97438 * 12 11 10 14 14 N 1.30831 * 125.90125 * 274.69949 * 9 8 7 15 15 C 1.54914 * 101.58192 * 324.50345 * 5 4 2 16 16 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 17 17 C 1.34774 * 125.64831 * 61.61497 * 16 2 1 18 18 O 1.21288 * 119.99873 * 0.02562 * 17 16 2 19 19 C 1.50697 * 120.00024 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47297 * 180.02562 * 19 17 16 21 21 C 1.76190 * 100.00208 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00294 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00405 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99777 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00287 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47120 * 60.00059 * 25 23 21 27 27 H 1.48511 * 109.47222 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47220 * 299.99846 * 25 23 21 29 29 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 32 32 H 1.08995 * 110.72489 * 259.97246 * 4 2 1 33 33 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 34 34 H 1.00898 * 110.99406 * 328.95826 * 7 5 4 35 35 H 1.09001 * 109.47212 * 299.99568 * 8 7 5 36 36 H 1.09002 * 109.47442 * 60.00504 * 8 7 5 37 37 H 1.08000 * 126.04511 * 359.97438 * 10 9 8 38 38 H 1.08005 * 126.12770 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.46782 * 89.99912 * 13 12 11 40 40 H 1.09000 * 109.47700 * 209.99729 * 13 12 11 41 41 H 1.08996 * 109.46864 * 330.00532 * 13 12 11 42 42 H 1.08999 * 110.36787 * 155.84172 * 15 5 4 43 43 H 1.08999 * 110.36029 * 278.05870 * 15 5 4 44 44 H 1.08999 * 109.46936 * 300.00137 * 19 17 16 45 45 H 1.08993 * 109.47167 * 60.00346 * 19 17 16 46 46 H 0.97000 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6944 6 1 4.1655 -0.8679 0.6615 7 7 3.5540 -2.7208 1.4874 8 6 4.9667 -3.1119 1.3925 9 6 5.2014 -4.3511 2.2174 10 6 5.1863 -5.6669 1.7432 11 6 5.4388 -6.4889 2.7880 12 7 5.6071 -5.7207 3.8845 13 6 5.8990 -6.2013 5.2373 14 7 5.4598 -4.3817 3.4996 15 6 2.8145 -1.8804 -0.7343 16 7 2.0301 -0.7157 -1.1830 17 6 1.8076 -0.3652 -2.4652 18 8 1.1439 0.6178 -2.7189 19 6 2.3835 -1.1947 -3.5838 20 16 1.9130 -0.4718 -5.1751 21 6 2.6956 -1.6081 -6.2708 22 1 3.2560 -2.4419 -5.8743 23 6 2.5929 -1.4312 -7.6437 24 7 1.9103 -0.4147 -8.1270 25 14 3.4232 -2.6355 -8.8053 26 1 2.8789 -3.9983 -8.5775 27 1 3.1637 -2.2277 -10.2096 28 1 4.8865 -2.6382 -8.5525 29 1 -0.3633 0.4979 0.8990 30 1 -0.3633 -1.0275 -0.0183 31 1 -0.3634 0.5296 -0.8807 32 1 2.3530 -0.0433 2.0201 33 1 1.3052 -1.4437 1.6201 34 1 3.2788 -2.5896 2.4492 35 1 5.2184 -3.3149 0.3516 36 1 5.5937 -2.3027 1.7669 37 1 5.0043 -5.9729 0.7236 38 1 5.4946 -7.5669 2.7511 39 1 6.9784 -6.2613 5.3766 40 1 5.4762 -5.5111 5.9673 41 1 5.4596 -7.1893 5.3744 42 1 3.6716 -2.0356 -1.3896 43 1 2.1903 -2.7735 -0.7093 44 1 3.4701 -1.2128 -3.5005 45 1 1.9971 -2.2118 -3.5180 46 1 1.8382 -0.2912 -9.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:58 Heat of formation + Delta-G solvation = 51.628978 kcal Electronic energy + Delta-G solvation = -26075.566911 eV Core-core repulsion = 22321.367459 eV Total energy + Delta-G solvation = -3754.199452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46685 -40.01348 -37.69104 -35.64447 -33.45962 -32.38857 -32.07845 -30.61735 -29.99865 -28.66496 -27.39625 -25.85197 -25.43842 -24.80678 -21.96512 -21.48181 -21.02165 -20.01763 -18.85452 -17.61711 -17.34386 -16.87875 -16.34419 -15.86571 -15.38862 -15.06150 -14.77645 -14.74038 -14.69034 -14.21448 -14.12547 -13.70195 -13.61819 -13.22815 -12.97546 -12.92439 -12.87046 -12.62761 -12.49583 -12.40058 -12.28941 -11.84172 -11.72970 -11.33623 -11.04019 -11.00409 -10.99910 -10.94065 -10.75853 -10.72838 -9.78069 -9.65684 -9.28920 -9.01988 -8.88566 -8.78307 -8.40159 -8.18498 -6.45396 -6.17479 -3.87667 1.53648 2.14957 2.43169 2.96587 3.14920 3.26466 3.28685 3.32006 3.63058 3.95035 4.11722 4.24279 4.28178 4.46283 4.49402 4.62043 4.68489 4.82702 4.90228 4.93640 5.08456 5.13546 5.17401 5.23567 5.25601 5.41694 5.45983 5.51577 5.57221 5.63456 5.68327 5.70005 5.75351 5.76266 5.86612 5.97739 6.13647 6.20996 6.31838 6.34743 6.60009 6.66297 6.70253 6.99592 7.39198 7.63329 7.78134 8.39219 8.65394 9.27578 10.89882 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.002379 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.621572 B =11766.838906 C =14046.107189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.067 0.933 7 N -0.670 5.670 8 C 0.140 3.860 9 C 0.079 3.921 10 C -0.251 4.251 11 C 0.049 3.951 12 N -0.378 5.378 13 C 0.102 3.898 14 N -0.295 5.295 15 C 0.113 3.887 16 N -0.622 5.622 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.348 0.652 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -11.195 28.259 31.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.085 0.915 7 N -0.303 5.303 8 C 0.009 3.991 9 C -0.088 4.088 10 C -0.281 4.281 11 C -0.097 4.097 12 N -0.161 5.161 13 C -0.039 4.039 14 N -0.119 5.119 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.339 3.661 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.168 0.832 38 H 0.191 0.809 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.046 -9.419 28.340 30.470 hybrid contribution 1.697 -2.023 -0.513 2.690 sum 7.743 -11.443 27.826 31.068 Atomic orbital electron populations 1.22139 0.94701 1.02380 1.02843 1.21398 0.94852 0.96169 0.84022 0.90826 1.22932 0.97474 0.99347 0.97032 1.22686 0.97398 0.89819 0.93901 0.91525 1.60305 1.18747 1.34816 1.16412 1.20311 0.88907 0.91182 0.98675 1.22120 0.99227 0.95942 0.91474 1.21441 1.14305 0.91689 1.00623 1.22556 1.01993 0.98309 0.86815 1.48464 1.55315 1.04140 1.08145 1.21840 1.02108 1.00400 0.79570 1.77272 1.24174 0.96352 1.14091 1.22225 0.95712 0.89255 0.93911 1.48546 1.53829 1.28797 1.04843 1.19980 0.79794 0.84991 0.81370 1.90691 1.38697 1.27025 1.82521 1.23513 1.03592 1.02671 0.99927 1.85374 1.69760 1.37645 0.90650 1.22821 1.38263 1.14055 0.93099 0.90991 1.24989 0.95284 0.95997 0.97339 1.70013 1.38550 1.28142 1.13623 0.86232 0.79639 0.80589 0.79081 1.19934 1.20853 1.19952 0.92143 0.92486 0.90786 0.90250 0.89465 0.83240 0.88575 0.93434 0.83219 0.80939 0.90863 0.89363 0.89462 0.90652 0.90314 0.89413 0.89290 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.09 37.16 0.34 -1.71 16 2 C 0.14 1.73 3.46 -66.95 -0.23 1.50 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -1.14 5.88 -24.90 -0.15 -1.29 16 5 C 0.07 0.67 3.38 -65.56 -0.22 0.44 16 6 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 7 N -0.67 -5.76 6.40 -105.72 -0.68 -6.43 16 8 C 0.14 1.20 6.11 -4.98 -0.03 1.17 16 9 C 0.08 0.78 6.73 -82.41 -0.55 0.22 16 10 C -0.25 -2.24 10.74 -40.01 -0.43 -2.67 16 11 C 0.05 0.36 11.49 -17.22 -0.20 0.16 16 12 N -0.38 -3.07 4.01 -68.16 -0.27 -3.35 16 13 C 0.10 0.39 11.47 59.85 0.69 1.08 16 14 N -0.30 -3.13 12.58 33.67 0.42 -2.70 16 15 C 0.11 1.33 6.39 -2.53 -0.02 1.31 16 16 N -0.62 -9.30 3.07 -163.01 -0.50 -9.80 16 17 C 0.55 10.87 7.66 -10.99 -0.08 10.78 16 18 O -0.52 -12.04 14.91 5.55 0.08 -11.95 16 19 C -0.15 -3.08 5.16 36.00 0.19 -2.89 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 22 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 25 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.17 6.90 -51.93 -0.36 0.81 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 34 H 0.35 2.87 8.43 -39.29 -0.33 2.53 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.71 7.85 -51.92 -0.41 1.31 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -36.61 396.26 -9.31 -45.92 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.34 Total: 0.31 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.50 Total: -4.96 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.29 Total: -47.95 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.61 -9.31 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.551 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds