Wall clock time and date at job start Tue Mar 31 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47055 * 2 1 4 4 O 1.42897 * 109.46938 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99810 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47056 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00244 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63052 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.77623 * 126.36901 * 9 8 6 11 11 C 1.53036 * 109.33909 * 54.61900 * 10 9 8 12 12 H 1.08998 * 109.46343 * 58.67009 * 11 10 9 13 13 C 1.52999 * 109.46209 * 178.63045 * 11 10 9 14 14 F 1.39905 * 109.47026 * 60.00082 * 13 11 10 15 15 F 1.39900 * 109.47564 * 180.02562 * 13 11 10 16 16 F 1.39900 * 109.47185 * 299.99903 * 13 11 10 17 17 C 1.53042 * 109.54058 * 298.68652 * 11 10 9 18 18 H 1.09000 * 109.49338 * 301.34556 * 17 11 10 19 19 N 1.46497 * 109.49865 * 181.28568 * 17 11 10 20 20 C 1.36937 * 120.00227 * 155.12778 * 19 17 11 21 21 H 1.08001 * 120.00030 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46756 * 89.99873 * 24 22 20 26 26 H 1.48495 * 109.47453 * 209.99562 * 24 22 20 27 27 H 1.48497 * 109.47130 * 330.00100 * 24 22 20 28 28 C 1.46927 * 120.63332 * 179.97438 * 8 6 5 29 29 H 1.09008 * 109.46941 * 300.00453 * 1 2 3 30 30 H 1.08996 * 109.47039 * 59.99906 * 1 2 3 31 31 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46774 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.46997 * 119.99174 * 2 1 3 34 34 H 1.08997 * 109.47610 * 59.99429 * 3 2 1 35 35 H 1.09007 * 109.46865 * 299.99742 * 3 2 1 36 36 H 1.08999 * 109.47075 * 60.00276 * 5 4 3 37 37 H 1.08996 * 109.47309 * 299.99819 * 5 4 3 38 38 H 1.09000 * 109.58414 * 6.58067 * 9 8 6 39 39 H 1.08999 * 109.58551 * 246.15992 * 9 8 6 40 40 H 1.09002 * 109.49796 * 174.58834 * 10 9 8 41 41 H 1.09000 * 109.49812 * 294.65558 * 10 9 8 42 42 H 0.97008 * 119.99779 * 335.12381 * 19 17 11 43 43 H 0.96995 * 120.00329 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.58621 * 353.42243 * 28 8 6 45 45 H 1.09003 * 109.58297 * 113.69808 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0742 1.5340 0.0022 8 7 6.3165 3.7393 0.0017 9 6 5.6993 5.0727 0.0013 10 6 6.2720 5.8815 1.1694 11 6 7.7994 5.8960 1.0750 12 1 8.1003 6.3316 0.1223 13 6 8.3730 6.7316 2.2211 14 9 7.9865 6.1733 3.4443 15 9 9.7693 6.7455 2.1348 16 9 7.8878 8.0408 2.1319 17 6 8.3318 4.4643 1.1709 18 1 8.0113 4.0194 2.1130 19 7 9.7954 4.4819 1.1114 20 6 10.5156 3.4584 1.6673 21 1 10.0047 2.6385 2.1500 22 6 11.9025 3.4748 1.6103 23 7 12.5253 4.4738 1.0216 24 14 12.8850 2.0791 2.3693 25 1 13.1035 1.0181 1.3534 26 1 14.1969 2.5942 2.8370 27 1 12.1356 1.5152 3.5207 28 6 7.7823 3.6395 0.0036 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 3.7283 3.2894 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 4.6199 4.9757 0.1184 39 1 5.9229 5.5785 -0.9379 40 1 5.8950 6.9032 1.1239 41 1 5.9701 5.4239 2.1114 42 1 10.2544 5.2185 0.6781 43 1 13.4944 4.4851 0.9815 44 1 8.0774 2.5969 0.1222 45 1 8.1761 4.0259 -0.9366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333014539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:18 Heat of formation + Delta-G solvation = -222.344026 kcal Electronic energy + Delta-G solvation = -31067.058972 eV Core-core repulsion = 26284.076797 eV Total energy + Delta-G solvation = -4782.982175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.55920 -47.12804 -46.87257 -40.17627 -38.32497 -37.26121 -34.67714 -33.93561 -32.94153 -31.42819 -29.30793 -28.37826 -26.71134 -25.58468 -24.03744 -23.31473 -22.00844 -21.85270 -20.60834 -19.16396 -17.87912 -17.70224 -17.67609 -17.25190 -16.79277 -16.71507 -16.44707 -15.62182 -15.36611 -14.85405 -14.49784 -14.26868 -14.22125 -13.94487 -13.71144 -13.53604 -13.44812 -13.35647 -13.12256 -13.06079 -12.99691 -12.96416 -12.63679 -12.42565 -12.36320 -12.23271 -12.18570 -11.50128 -11.30193 -11.18421 -11.17494 -11.05328 -10.81088 -10.80046 -10.37172 -10.01912 -9.91801 -9.79082 -9.57340 -9.13396 -8.52656 -7.08138 -5.80395 -3.12547 2.66829 2.71491 3.23854 3.45498 3.50981 3.52525 3.65058 4.18008 4.26446 4.39287 4.47946 4.61488 4.64098 4.73041 4.79015 4.87699 4.93479 5.00165 5.00812 5.11943 5.15110 5.16714 5.25508 5.34569 5.39546 5.40730 5.54732 5.66845 5.67247 5.74103 5.82191 5.83761 5.91597 5.97752 6.04935 6.46241 6.50169 6.71857 6.90445 7.47506 7.69626 8.28927 8.35002 9.48341 9.95458 10.31233 11.40939 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003339 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.660405 B = 8382.606266 C =10212.953421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.046 3.954 6 C 0.512 3.488 7 O -0.515 6.515 8 N -0.611 5.611 9 C 0.112 3.888 10 C -0.132 4.132 11 C -0.142 4.142 12 H 0.111 0.889 13 C 0.457 3.543 14 F -0.186 7.186 15 F -0.154 7.154 16 F -0.199 7.199 17 C 0.172 3.828 18 H 0.065 0.935 19 N -0.714 5.714 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.003 4.003 23 N -0.926 5.926 24 Si 0.907 3.093 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.098 3.902 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.390 0.610 43 H 0.256 0.744 44 H 0.100 0.900 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.091 3.601 -3.040 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.389 6.389 8 N -0.348 5.348 9 C -0.011 4.011 10 C -0.171 4.171 11 C -0.163 4.163 12 H 0.130 0.870 13 C 0.403 3.597 14 F -0.168 7.168 15 F -0.135 7.135 16 F -0.181 7.181 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.356 5.356 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.738 3.262 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.227 0.773 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.557 2.695 -2.911 22.903 hybrid contribution 0.709 0.121 0.404 0.825 sum -21.848 2.817 -2.507 22.171 Atomic orbital electron populations 1.21697 0.94744 1.02278 1.01915 1.21454 0.95501 0.95494 1.03773 1.22623 0.80725 0.98244 1.00109 1.88030 1.19343 1.25421 1.95375 1.22262 0.92259 0.86724 1.02135 1.20180 0.88333 0.84501 0.77177 1.90750 1.74308 1.26071 1.47814 1.48273 1.07841 1.05017 1.73624 1.21671 0.97546 0.83275 0.98634 1.21972 0.93045 1.01665 1.00388 1.22829 0.96957 0.99306 0.97173 0.87048 1.20406 0.77646 0.77736 0.83906 1.93134 1.91010 1.85073 1.47551 1.93321 1.28143 1.96016 1.96001 1.93115 1.88237 1.40337 1.96404 1.20486 0.86916 0.89083 0.97513 0.91665 1.42503 0.97702 1.27053 1.68345 1.19178 0.88718 0.99934 1.30035 0.90931 1.24738 0.96449 0.98049 1.00771 1.69666 1.08080 1.31479 1.48011 0.86195 0.79582 0.81516 0.78917 1.21541 1.21753 1.20606 1.22758 0.75604 1.04322 0.99974 0.92544 0.92575 0.91986 0.90947 0.90895 0.93222 0.93274 0.90408 0.90513 0.89666 0.90574 0.89424 0.90036 0.77347 0.93392 0.88139 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -1.02 6.30 -26.73 -0.17 -1.19 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 O -0.36 -4.71 9.88 -55.14 -0.54 -5.26 16 5 C 0.05 0.50 4.76 36.01 0.17 0.67 16 6 C 0.51 7.81 7.78 -10.99 -0.09 7.72 16 7 O -0.52 -10.55 15.91 -14.36 -0.23 -10.77 16 8 N -0.61 -8.40 2.97 -172.80 -0.51 -8.91 16 9 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 10 C -0.13 -1.37 5.11 -26.62 -0.14 -1.51 16 11 C -0.14 -2.07 1.82 -90.58 -0.16 -2.23 16 12 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 13 C 0.46 7.70 2.68 37.16 0.10 7.80 16 14 F -0.19 -3.31 16.34 2.25 0.04 -3.27 16 15 F -0.15 -3.24 14.67 2.25 0.03 -3.21 16 16 F -0.20 -3.00 16.77 2.25 0.04 -2.96 16 17 C 0.17 3.19 2.24 -67.84 -0.15 3.04 16 18 H 0.07 1.32 7.79 -51.93 -0.40 0.92 16 19 N -0.71 -16.91 3.85 -53.34 -0.21 -17.12 16 20 C -0.25 -6.75 9.93 -15.06 -0.15 -6.90 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 23 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.10 1.70 6.01 -3.74 -0.02 1.68 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 37 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 38 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.72 7.77 -51.93 -0.40 0.32 16 41 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 42 H 0.39 9.80 6.54 -40.82 -0.27 9.53 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 2.10 7.00 -51.93 -0.36 1.74 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -33.90 374.73 -6.91 -40.82 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.74 Total: 4.01 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.14 Total: 10.14 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.01 Total: -52.73 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.77 Total: -16.03 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 0.11 Total: -9.44 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.90 -6.91 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333014539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.526 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds