Wall clock time and date at job start Tue Mar 31 2020 21:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47198 * 2 1 4 4 O 1.42902 * 109.46865 * 180.02562 * 3 2 1 5 5 C 1.42898 * 113.99753 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47094 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00392 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.62908 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77375 * 126.41467 * 9 8 6 11 11 C 1.53038 * 109.31353 * 54.63733 * 10 9 8 12 12 H 1.08996 * 109.45651 * 58.65383 * 11 10 9 13 13 C 1.52996 * 109.45815 * 178.61300 * 11 10 9 14 14 F 1.39905 * 109.46910 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47226 * 300.06778 * 13 11 10 16 16 F 1.39904 * 109.47279 * 60.07010 * 13 11 10 17 17 C 1.53041 * 109.53332 * 298.63348 * 11 10 9 18 18 H 1.09002 * 109.49243 * 181.34846 * 17 11 10 19 19 N 1.46494 * 109.50240 * 301.41173 * 17 11 10 20 20 C 1.36931 * 120.00458 * 205.00307 * 19 17 11 21 21 H 1.08002 * 120.00103 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 C 1.46924 * 120.63132 * 180.02562 * 8 6 5 29 29 H 1.09009 * 109.47245 * 300.00479 * 1 2 3 30 30 H 1.09005 * 109.47157 * 59.99590 * 1 2 3 31 31 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47352 * 239.99726 * 2 1 3 33 33 H 1.08997 * 109.47067 * 119.99535 * 2 1 3 34 34 H 1.08998 * 109.46822 * 60.00003 * 3 2 1 35 35 H 1.08997 * 109.46732 * 299.99740 * 3 2 1 36 36 H 1.09000 * 109.47700 * 59.99460 * 5 4 3 37 37 H 1.09006 * 109.46607 * 299.99069 * 5 4 3 38 38 H 1.09007 * 109.58801 * 6.62695 * 9 8 6 39 39 H 1.08997 * 109.59207 * 246.20388 * 9 8 6 40 40 H 1.09003 * 109.49718 * 294.67934 * 10 9 8 41 41 H 1.09007 * 109.52436 * 174.60757 * 10 9 8 42 42 H 0.97000 * 119.99459 * 25.00106 * 19 17 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.59402 * 113.80110 * 28 8 6 45 45 H 1.09000 * 109.58788 * 353.36783 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5525 2.6289 -0.0001 7 8 6.0741 1.5340 -0.0001 8 7 6.3165 3.7392 -0.0002 9 6 5.6993 5.0725 -0.0008 10 6 6.2732 5.8820 1.1664 11 6 7.8005 5.8964 1.0699 12 1 8.0999 6.3313 0.1164 13 6 8.3757 6.7328 2.2145 14 9 9.7719 6.7466 2.1261 15 9 7.8891 8.0415 2.1260 16 9 7.9922 6.1745 3.4386 17 6 8.3328 4.4648 1.1669 18 1 9.4218 4.4779 1.1221 19 7 7.9027 3.8679 2.4337 20 6 8.6263 2.8474 2.9904 21 1 9.5145 2.4827 2.4957 22 6 8.2191 2.2821 4.1910 23 7 7.1370 2.7269 4.7941 24 14 9.2058 0.8895 4.9501 25 1 8.6924 -0.4110 4.4498 26 1 10.6355 1.0344 4.5754 27 1 9.0742 0.9380 6.4284 28 6 7.7824 3.6393 -0.0008 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7290 3.2884 0.8903 37 1 3.7283 3.2892 -0.8897 38 1 4.6200 4.9757 0.1174 39 1 5.9221 5.5780 -0.9404 40 1 5.9725 5.4246 2.1090 41 1 5.8962 6.9038 1.1214 42 1 7.1053 4.1957 2.8782 43 1 6.8521 2.3317 5.6330 44 1 8.1748 4.0281 -0.9404 45 1 8.0776 2.5967 0.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333014549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:21 Heat of formation + Delta-G solvation = -218.819468 kcal Electronic energy + Delta-G solvation = -31797.525929 eV Core-core repulsion = 27014.696590 eV Total energy + Delta-G solvation = -4782.829339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.55606 -47.13979 -46.86197 -39.95798 -38.15553 -37.04406 -34.26646 -33.72007 -32.75111 -31.26591 -29.13195 -28.37575 -26.57677 -25.42206 -23.81530 -23.34206 -22.35044 -21.64445 -20.19738 -18.79111 -17.84487 -17.73638 -17.51221 -17.12969 -16.67176 -16.46411 -16.20860 -15.34437 -15.13542 -14.73723 -14.39599 -14.16364 -14.10029 -13.95798 -13.67615 -13.51756 -13.37590 -13.15273 -13.07258 -13.03960 -12.90656 -12.81661 -12.49513 -12.26406 -12.13775 -12.02042 -11.96890 -11.56561 -11.08418 -10.98654 -10.96364 -10.84613 -10.82449 -10.67731 -10.38389 -9.99596 -9.65537 -9.64866 -9.28276 -9.00611 -8.27428 -6.94349 -5.72425 -3.01818 2.92811 3.06975 3.26975 3.50563 3.55511 3.56326 3.90845 4.23190 4.31580 4.52292 4.65118 4.72846 4.84653 4.88026 4.96032 5.10408 5.12020 5.20822 5.24088 5.28629 5.33691 5.36094 5.38067 5.40214 5.50380 5.53471 5.60374 5.72337 5.82436 5.83831 5.97274 6.02501 6.04750 6.11634 6.26085 6.44235 6.55743 6.88108 7.15677 7.73595 7.75409 8.43449 8.63993 9.57258 10.06085 10.41108 11.49814 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.004357 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.587572 B = 6425.156128 C = 8279.002307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.362 6.362 5 C 0.048 3.952 6 C 0.520 3.480 7 O -0.509 6.509 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.138 4.138 12 H 0.108 0.892 13 C 0.456 3.544 14 F -0.187 7.187 15 F -0.199 7.199 16 F -0.154 7.154 17 C 0.164 3.836 18 H 0.073 0.927 19 N -0.709 5.709 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.282 1.282 27 H -0.293 1.293 28 C 0.098 3.902 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.054 0.946 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 7.906 -12.679 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.280 6.280 5 C -0.032 4.032 6 C 0.307 3.693 7 O -0.382 6.382 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.174 4.174 11 C -0.159 4.159 12 H 0.126 0.874 13 C 0.401 3.599 14 F -0.169 7.169 15 F -0.181 7.181 16 F -0.135 7.135 17 C 0.051 3.949 18 H 0.091 0.909 19 N -0.352 5.352 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.199 4.199 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.219 1.219 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.224 0.776 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.892 6.992 -12.556 16.899 hybrid contribution 0.146 -0.068 0.893 0.908 sum -8.746 6.924 -11.662 16.138 Atomic orbital electron populations 1.21691 0.94862 1.02143 1.01858 1.21446 0.95388 0.95635 1.03749 1.22595 0.80990 0.98108 0.99963 1.88032 1.19119 1.25502 1.95332 1.22230 0.92540 0.86613 1.01796 1.19965 0.88098 0.84414 0.76863 1.90725 1.74153 1.26037 1.47290 1.47764 1.07039 1.04786 1.73999 1.21593 0.97781 0.83473 0.97898 1.21968 0.92796 1.01302 1.01365 1.22745 0.98123 0.98721 0.96316 0.87405 1.20460 0.75938 0.77767 0.85684 1.93140 1.30877 1.96404 1.96470 1.93114 1.87951 1.40462 1.96559 1.93320 1.90464 1.84230 1.45521 1.20608 0.97918 0.87230 0.89122 0.90921 1.42447 1.31735 1.40987 1.20031 1.19117 1.05934 1.09341 1.02768 0.91177 1.24663 0.97794 0.99661 0.97815 1.69653 1.24991 1.44242 1.18620 0.86226 0.79377 0.82545 0.78237 1.21641 1.20748 1.21904 1.22473 0.78278 1.04369 0.97603 0.92505 0.92692 0.92084 0.91093 0.90790 0.93181 0.93531 0.90345 0.91020 0.89834 0.91123 0.89077 0.89966 0.77551 0.93622 0.92812 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.12 -1.36 6.30 -26.73 -0.17 -1.53 16 3 C 0.06 0.71 5.94 37.16 0.22 0.93 16 4 O -0.36 -5.95 9.88 -55.14 -0.54 -6.50 16 5 C 0.05 0.69 4.76 36.00 0.17 0.86 16 6 C 0.52 9.63 7.78 -10.99 -0.09 9.54 16 7 O -0.51 -12.08 15.91 -14.35 -0.23 -12.31 16 8 N -0.60 -9.48 2.89 -172.75 -0.50 -9.98 16 9 C 0.12 1.30 6.34 -3.71 -0.02 1.27 16 10 C -0.14 -1.74 4.95 -26.61 -0.13 -1.88 16 11 C -0.14 -1.99 2.02 -90.58 -0.18 -2.17 16 12 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.46 7.58 2.69 37.16 0.10 7.68 16 14 F -0.19 -3.27 16.77 2.25 0.04 -3.23 16 15 F -0.20 -2.99 16.77 2.25 0.04 -2.95 16 16 F -0.15 -3.22 14.40 2.25 0.03 -3.19 16 17 C 0.16 2.96 2.45 -67.79 -0.17 2.80 16 18 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 19 N -0.71 -16.80 3.68 -53.29 -0.20 -17.00 16 20 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 24 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 C 0.10 1.66 6.05 -3.69 -0.02 1.64 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 37 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 38 H 0.08 0.75 5.93 -51.92 -0.31 0.45 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.48 6.11 -51.93 -0.32 1.17 16 41 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 42 H 0.39 9.78 4.95 -40.82 -0.20 9.58 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 2.12 7.01 -51.93 -0.36 1.75 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -35.27 371.51 -6.81 -42.07 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.58 Total: 5.30 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.17 Total: 11.36 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.03 Total: -54.38 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.77 Total: -18.81 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.11 Total: -9.37 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.27 -6.81 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333014549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.747 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds