Wall clock time and date at job start Tue Mar 31 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47198 * 2 1 4 4 O 1.42902 * 109.46865 * 180.02562 * 3 2 1 5 5 C 1.42898 * 113.99753 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47094 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00392 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.62908 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77375 * 126.41467 * 9 8 6 11 11 C 1.53038 * 109.31353 * 54.63733 * 10 9 8 12 12 H 1.08996 * 109.45651 * 58.65383 * 11 10 9 13 13 C 1.52996 * 109.45815 * 178.61300 * 11 10 9 14 14 F 1.39905 * 109.46910 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47226 * 300.06778 * 13 11 10 16 16 F 1.39904 * 109.47279 * 60.07010 * 13 11 10 17 17 C 1.53041 * 109.53332 * 298.63348 * 11 10 9 18 18 H 1.09002 * 109.49243 * 181.34846 * 17 11 10 19 19 N 1.46494 * 109.50240 * 301.41173 * 17 11 10 20 20 C 1.36931 * 120.00458 * 205.00307 * 19 17 11 21 21 H 1.08002 * 120.00103 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 C 1.46924 * 120.63132 * 180.02562 * 8 6 5 29 29 H 1.09009 * 109.47245 * 300.00479 * 1 2 3 30 30 H 1.09005 * 109.47157 * 59.99590 * 1 2 3 31 31 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47352 * 239.99726 * 2 1 3 33 33 H 1.08997 * 109.47067 * 119.99535 * 2 1 3 34 34 H 1.08998 * 109.46822 * 60.00003 * 3 2 1 35 35 H 1.08997 * 109.46732 * 299.99740 * 3 2 1 36 36 H 1.09000 * 109.47700 * 59.99460 * 5 4 3 37 37 H 1.09006 * 109.46607 * 299.99069 * 5 4 3 38 38 H 1.09007 * 109.58801 * 6.62695 * 9 8 6 39 39 H 1.08997 * 109.59207 * 246.20388 * 9 8 6 40 40 H 1.09003 * 109.49718 * 294.67934 * 10 9 8 41 41 H 1.09007 * 109.52436 * 174.60757 * 10 9 8 42 42 H 0.97000 * 119.99459 * 25.00106 * 19 17 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.59402 * 113.80110 * 28 8 6 45 45 H 1.09000 * 109.58788 * 353.36783 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5525 2.6289 -0.0001 7 8 6.0741 1.5340 -0.0001 8 7 6.3165 3.7392 -0.0002 9 6 5.6993 5.0725 -0.0008 10 6 6.2732 5.8820 1.1664 11 6 7.8005 5.8964 1.0699 12 1 8.0999 6.3313 0.1164 13 6 8.3757 6.7328 2.2145 14 9 9.7719 6.7466 2.1261 15 9 7.8891 8.0415 2.1260 16 9 7.9922 6.1745 3.4386 17 6 8.3328 4.4648 1.1669 18 1 9.4218 4.4779 1.1221 19 7 7.9027 3.8679 2.4337 20 6 8.6263 2.8474 2.9904 21 1 9.5145 2.4827 2.4957 22 6 8.2191 2.2821 4.1910 23 7 7.1370 2.7269 4.7941 24 14 9.2058 0.8895 4.9501 25 1 8.6924 -0.4110 4.4498 26 1 10.6355 1.0344 4.5754 27 1 9.0742 0.9380 6.4284 28 6 7.7824 3.6393 -0.0008 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7290 3.2884 0.8903 37 1 3.7283 3.2892 -0.8897 38 1 4.6200 4.9757 0.1174 39 1 5.9221 5.5780 -0.9404 40 1 5.9725 5.4246 2.1090 41 1 5.8962 6.9038 1.1214 42 1 7.1053 4.1957 2.8782 43 1 6.8521 2.3317 5.6330 44 1 8.1748 4.0281 -0.9404 45 1 8.0776 2.5967 0.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333014549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:20 Heat of formation + Delta-G solvation = -242.375347 kcal Electronic energy + Delta-G solvation = -31798.547388 eV Core-core repulsion = 27014.696590 eV Total energy + Delta-G solvation = -4783.850799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.90325 -48.43703 -48.31416 -41.25020 -39.34366 -38.34906 -35.92188 -34.59219 -34.29431 -32.83515 -30.72632 -29.57050 -27.75859 -26.49177 -25.69220 -24.47552 -23.73320 -22.48848 -21.52714 -20.15470 -19.30254 -19.07591 -19.05301 -18.62948 -17.89977 -17.51666 -17.39474 -16.78160 -16.40316 -16.18208 -15.95766 -15.55273 -15.31435 -15.13333 -15.05459 -14.90380 -14.79654 -14.51391 -14.47266 -14.40530 -14.14820 -14.02543 -13.77984 -13.55231 -13.15928 -13.01294 -12.96922 -12.88883 -12.86470 -12.74191 -12.31564 -12.09917 -11.98619 -11.82062 -11.79142 -11.69276 -11.55270 -11.06995 -10.65845 -10.64263 -9.66895 -8.89038 -7.93133 -5.17939 1.40653 1.44658 1.49641 1.64879 1.85759 2.00180 2.54314 2.89986 2.98017 3.10109 3.26211 3.41844 3.62074 3.78876 3.96428 3.97291 4.03039 4.07978 4.10658 4.18891 4.29392 4.29890 4.39492 4.41943 4.55628 4.62676 4.65522 4.69073 4.75555 4.81524 4.85280 4.86348 5.11239 5.15503 5.23126 5.27418 5.35115 5.50492 5.64609 6.15521 6.28356 6.52462 7.31709 7.38104 8.10409 8.32944 9.29810 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.004357 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.587572 B = 6425.156128 C = 8279.002307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.406 6.406 5 C 0.053 3.947 6 C 0.504 3.496 7 O -0.581 6.581 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.127 4.127 12 H 0.158 0.842 13 C 0.451 3.549 14 F -0.195 7.195 15 F -0.186 7.186 16 F -0.186 7.186 17 C 0.156 3.844 18 H 0.067 0.933 19 N -0.718 5.718 20 C -0.230 4.230 21 H 0.068 0.932 22 C -0.067 4.067 23 N -0.961 5.961 24 Si 0.956 3.044 25 H -0.300 1.300 26 H -0.269 1.269 27 H -0.294 1.294 28 C 0.104 3.896 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.380 0.620 43 H 0.246 0.754 44 H 0.101 0.899 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 10.485 -15.319 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.021 4.021 4 O -0.325 6.325 5 C -0.026 4.026 6 C 0.293 3.707 7 O -0.460 6.460 8 N -0.331 5.331 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.146 4.146 12 H 0.176 0.824 13 C 0.397 3.603 14 F -0.176 7.176 15 F -0.167 7.167 16 F -0.167 7.167 17 C 0.046 3.954 18 H 0.084 0.916 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.086 0.914 22 C -0.260 4.260 23 N -0.611 5.611 24 Si 0.787 3.213 25 H -0.228 1.228 26 H -0.193 1.193 27 H -0.221 1.221 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.215 0.785 43 H 0.055 0.945 44 H 0.119 0.881 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.157 9.648 -15.243 20.703 hybrid contribution 0.598 -0.763 1.624 1.891 sum -9.559 8.885 -13.619 18.863 Atomic orbital electron populations 1.21652 0.92398 1.02917 1.02863 1.21503 0.97476 0.95326 1.02270 1.22840 0.78831 0.98703 1.01696 1.87993 1.21723 1.27108 1.95721 1.22336 0.89314 0.86480 1.04498 1.20918 0.90194 0.83996 0.75634 1.90686 1.75685 1.28799 1.50802 1.47927 1.06438 1.06310 1.72395 1.22058 0.99036 0.80660 0.99217 1.22004 0.91483 1.03405 1.00235 1.22785 0.99110 0.95364 0.97387 0.82423 1.20856 0.75697 0.78544 0.85217 1.93126 1.31615 1.96488 1.96413 1.93134 1.87695 1.39501 1.96414 1.93265 1.90750 1.84885 1.47819 1.20834 0.97856 0.89662 0.87082 0.91553 1.42528 1.31148 1.40368 1.22004 1.19447 1.05418 1.09222 1.02130 0.91366 1.25310 0.99243 1.02331 0.99083 1.69781 1.26697 1.45789 1.18881 0.85385 0.78908 0.79753 0.77249 1.22775 1.19350 1.22078 1.22222 0.79658 1.01377 0.98891 0.92049 0.91048 0.91514 0.91760 0.93193 0.92431 0.90524 0.89183 0.86101 0.87140 0.86308 0.93128 0.86219 0.78515 0.94485 0.88121 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.13 -2.75 6.30 30.59 0.19 -2.56 16 3 C 0.06 1.21 5.94 71.98 0.43 1.64 16 4 O -0.41 -13.23 9.88 -129.94 -1.28 -14.51 16 5 C 0.05 1.40 4.76 71.23 0.34 1.74 16 6 C 0.50 18.45 7.78 87.65 0.68 19.13 16 7 O -0.58 -28.83 15.91 16.00 0.25 -28.58 16 8 N -0.60 -17.54 2.89 -818.83 -2.37 -19.91 16 9 C 0.11 1.93 6.34 86.36 0.55 2.48 16 10 C -0.13 -2.91 4.95 30.67 0.15 -2.76 16 11 C -0.13 -3.21 2.02 -10.77 -0.02 -3.23 16 12 H 0.16 2.51 8.14 -2.39 -0.02 2.49 16 13 C 0.45 14.14 2.69 71.98 0.19 14.33 16 14 F -0.19 -6.51 16.77 44.97 0.75 -5.76 16 15 F -0.19 -5.01 16.77 44.97 0.75 -4.26 16 16 F -0.19 -7.79 14.40 44.97 0.65 -7.15 16 17 C 0.16 5.47 2.45 45.08 0.11 5.58 16 18 H 0.07 2.41 7.70 -2.39 -0.02 2.39 16 19 N -0.72 -34.67 3.68 -322.52 -1.19 -35.86 16 20 C -0.23 -13.07 9.93 84.03 0.83 -12.23 16 21 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 23 N -0.96 -60.57 13.06 21.65 0.28 -60.29 16 24 Si 0.96 49.50 29.55 68.60 2.03 51.53 16 25 H -0.30 -15.85 7.11 99.48 0.71 -15.15 16 26 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 28 C 0.10 3.38 6.05 86.38 0.52 3.91 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 2.15 7.69 -2.39 -0.02 2.14 16 37 H 0.12 1.96 7.94 -2.38 -0.02 1.94 16 38 H 0.11 1.38 5.93 -2.38 -0.01 1.37 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.57 6.11 -2.39 -0.01 1.56 16 41 H 0.12 1.79 7.76 -2.38 -0.02 1.78 16 42 H 0.38 19.65 4.95 -92.71 -0.46 19.19 16 43 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 44 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.05 2.28 7.01 -2.39 -0.02 2.26 16 Total: -1.00 -84.97 371.51 5.60 -79.37 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.55 Total: 22.27 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 5.16 Total: 23.14 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -3.27 Total: -116.06 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.03 Total: -43.09 kcal Atomic # 9 Polarization: -19.32 SS G_CDS: 2.16 Total: -17.16 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.53 kcal Total: -84.97 5.60 -79.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333014549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.003 kcal (2) G-P(sol) polarization free energy of solvation -84.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds