Wall clock time and date at job start Tue Mar 31 2020 21:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 O 1.42904 * 109.47065 * 179.97438 * 3 2 1 5 5 C 1.42904 * 113.99551 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46642 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00123 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.63227 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77313 * 233.58572 * 9 8 6 11 11 C 1.53039 * 109.31499 * 305.36301 * 10 9 8 12 12 H 1.08999 * 109.46511 * 301.34624 * 11 10 9 13 13 C 1.53004 * 109.46050 * 181.38717 * 11 10 9 14 14 F 1.39896 * 109.47076 * 299.93124 * 13 11 10 15 15 F 1.39902 * 109.47199 * 59.93404 * 13 11 10 16 16 F 1.39903 * 109.46870 * 179.97438 * 13 11 10 17 17 C 1.53045 * 109.53790 * 61.36737 * 11 10 9 18 18 H 1.09004 * 109.52161 * 58.60183 * 17 11 10 19 19 N 1.46499 * 109.49904 * 178.68314 * 17 11 10 20 20 C 1.36939 * 119.99933 * 205.11404 * 19 17 11 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47144 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47140 * 210.00775 * 24 22 20 27 27 H 1.48502 * 109.46967 * 330.00206 * 24 22 20 28 28 C 1.46923 * 120.62899 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.47138 * 299.99683 * 1 2 3 30 30 H 1.08995 * 109.47120 * 59.99973 * 1 2 3 31 31 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47213 * 239.99834 * 2 1 3 33 33 H 1.09008 * 109.47363 * 120.00298 * 2 1 3 34 34 H 1.09001 * 109.46816 * 60.00120 * 3 2 1 35 35 H 1.08995 * 109.47105 * 300.00036 * 3 2 1 36 36 H 1.08990 * 109.47442 * 60.00121 * 5 4 3 37 37 H 1.09002 * 109.47034 * 299.99262 * 5 4 3 38 38 H 1.08990 * 109.58590 * 353.37519 * 9 8 6 39 39 H 1.08999 * 109.58368 * 113.80408 * 9 8 6 40 40 H 1.08994 * 109.50006 * 65.32074 * 10 9 8 41 41 H 1.09007 * 109.49411 * 185.38225 * 10 9 8 42 42 H 0.97001 * 119.99790 * 24.83377 * 19 17 11 43 43 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.59020 * 6.62973 * 28 8 6 45 45 H 1.09002 * 109.59306 * 246.19838 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0501 2.7480 0.0012 6 6 5.5525 2.6289 0.0025 7 8 6.0741 1.5340 0.0023 8 7 6.3164 3.7393 0.0027 9 6 5.6991 5.0726 0.0023 10 6 6.2739 5.8816 -1.1647 11 6 7.8010 5.8961 -1.0670 12 1 8.0999 6.3314 -0.1135 13 6 8.3771 6.7322 -2.2116 14 9 7.9946 6.1734 -3.4357 15 9 7.8905 8.0409 -2.1240 16 9 9.7732 6.7460 -2.1222 17 6 8.3336 4.4645 -1.1632 18 1 8.0147 4.0198 -2.1059 19 7 9.7972 4.4821 -1.1012 20 6 10.5185 3.4615 -1.6611 21 1 10.0082 2.6415 -2.1445 22 6 11.9054 3.4811 -1.6075 23 7 12.5272 4.4803 -1.0180 24 14 12.8893 2.0886 -2.3706 25 1 13.1873 2.4124 -3.7888 26 1 14.1615 1.9146 -1.6246 27 1 12.1012 0.8317 -2.3049 28 6 7.7822 3.6394 0.0045 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7282 3.2886 0.8912 37 1 3.7289 3.2891 -0.8888 38 1 4.6201 4.9757 -0.1166 39 1 5.9214 5.5784 0.9420 40 1 5.9739 5.4239 -2.1073 41 1 5.8963 6.9032 -1.1199 42 1 10.2554 5.2186 -0.6671 43 1 13.4964 4.4937 -0.9803 44 1 8.0776 2.5969 -0.1131 45 1 8.1740 4.0286 0.9443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333014550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:23 Heat of formation + Delta-G solvation = -244.493894 kcal Electronic energy + Delta-G solvation = -31069.067226 eV Core-core repulsion = 26285.124560 eV Total energy + Delta-G solvation = -4783.942666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.94264 -48.45917 -48.36500 -41.32112 -39.32108 -38.38904 -36.27897 -34.58423 -34.37319 -33.03883 -30.68717 -29.51439 -27.78978 -26.51671 -25.73082 -24.44713 -23.41443 -22.46357 -21.94539 -20.29191 -19.41250 -19.09383 -19.05957 -18.70124 -17.97967 -17.53920 -17.41517 -16.93189 -16.49094 -16.21724 -15.79481 -15.54422 -15.40370 -15.20954 -15.06989 -14.86856 -14.81867 -14.61488 -14.52649 -14.47670 -14.18042 -14.07751 -13.90691 -13.65616 -13.15888 -12.99721 -12.98530 -12.93232 -12.84440 -12.62520 -12.29374 -12.19974 -12.11948 -11.79366 -11.76536 -11.75358 -11.60116 -11.13934 -10.76704 -10.62916 -9.82422 -9.04565 -7.97439 -5.27246 1.44128 1.44618 1.53410 1.55594 1.70185 1.93003 2.51461 2.85502 2.92109 3.10222 3.13963 3.36345 3.55561 3.66488 3.89190 4.06766 4.07028 4.08735 4.15720 4.18528 4.23232 4.28699 4.30801 4.44926 4.46133 4.56580 4.60953 4.66188 4.68962 4.82309 4.87199 4.92144 5.05588 5.19015 5.20210 5.25844 5.36681 5.41273 5.51761 6.14292 6.23198 6.43844 7.16799 7.32025 7.98255 8.24495 9.24329 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.003337 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.707553 B = 8389.821454 C =10214.975073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.056 3.944 4 O -0.406 6.406 5 C 0.052 3.948 6 C 0.502 3.498 7 O -0.584 6.584 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.126 4.126 11 C -0.132 4.132 12 H 0.128 0.872 13 C 0.453 3.547 14 F -0.194 7.194 15 F -0.184 7.184 16 F -0.184 7.184 17 C 0.173 3.827 18 H 0.043 0.957 19 N -0.724 5.724 20 C -0.243 4.243 21 H 0.064 0.936 22 C -0.060 4.060 23 N -0.956 5.956 24 Si 0.962 3.038 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.383 0.617 43 H 0.252 0.748 44 H 0.054 0.946 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.660 5.301 3.622 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.020 4.020 4 O -0.326 6.326 5 C -0.026 4.026 6 C 0.291 3.709 7 O -0.463 6.463 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.165 4.165 11 C -0.152 4.152 12 H 0.146 0.854 13 C 0.399 3.601 14 F -0.176 7.176 15 F -0.165 7.165 16 F -0.166 7.166 17 C 0.063 3.937 18 H 0.061 0.939 19 N -0.366 5.366 20 C -0.375 4.375 21 H 0.082 0.918 22 C -0.254 4.254 23 N -0.606 5.606 24 Si 0.792 3.208 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.014 4.014 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.143 0.857 42 H 0.218 0.782 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.211 4.424 3.506 26.812 hybrid contribution 1.713 -0.371 -0.631 1.863 sum -24.498 4.053 2.875 24.997 Atomic orbital electron populations 1.21656 0.92717 1.02791 1.02855 1.21501 0.97226 0.95584 1.02348 1.22833 0.78669 0.98490 1.01984 1.87993 1.21744 1.27050 1.95806 1.22389 0.88043 0.86676 1.05540 1.21220 0.90639 0.83568 0.75504 1.90720 1.75870 1.28756 1.50942 1.48291 1.05991 1.07123 1.72689 1.22148 0.99715 0.80252 0.99261 1.22080 0.89214 1.04217 1.00949 1.22828 0.99965 0.95528 0.96900 0.85356 1.20764 0.76367 0.78685 0.84286 1.93114 1.90998 1.85274 1.48206 1.93138 1.87722 1.39345 1.96344 1.93265 1.30960 1.96231 1.96121 1.20565 0.84248 0.92126 0.96768 0.93901 1.42551 0.99916 1.26126 1.67968 1.19384 0.89181 1.00318 1.28628 0.91774 1.25399 0.97480 1.00315 1.02197 1.69791 1.07813 1.33178 1.49772 0.85315 0.78259 0.79475 0.77757 1.21489 1.21735 1.20208 1.22161 0.78775 1.01121 0.99328 0.91488 0.91655 0.91795 0.92529 0.92308 0.91092 0.91374 0.86454 0.86948 0.85024 0.87969 0.90424 0.85657 0.78221 0.93919 0.92693 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.97 6.30 30.59 0.19 -1.78 16 3 C 0.06 0.81 5.94 71.98 0.43 1.24 16 4 O -0.41 -9.78 9.88 -129.94 -1.28 -11.07 16 5 C 0.05 0.92 4.77 71.24 0.34 1.26 16 6 C 0.50 14.69 7.78 87.66 0.68 15.37 16 7 O -0.58 -24.81 15.91 16.01 0.25 -24.56 16 8 N -0.61 -15.45 2.97 -818.82 -2.43 -17.89 16 9 C 0.11 1.40 6.34 86.36 0.55 1.95 16 10 C -0.13 -2.08 5.11 30.67 0.16 -1.92 16 11 C -0.13 -3.58 1.82 -10.76 -0.02 -3.60 16 12 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 13 C 0.45 14.76 2.68 71.98 0.19 14.95 16 14 F -0.19 -6.79 16.33 44.97 0.73 -6.05 16 15 F -0.18 -5.07 16.77 44.97 0.75 -4.32 16 16 F -0.18 -7.89 14.67 44.97 0.66 -7.23 16 17 C 0.17 6.49 2.24 45.09 0.10 6.60 16 18 H 0.04 1.79 7.78 -2.38 -0.02 1.77 16 19 N -0.72 -35.35 3.85 -322.48 -1.24 -36.59 16 20 C -0.24 -13.72 9.93 84.03 0.83 -12.89 16 21 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 23 N -0.96 -58.27 13.06 21.65 0.28 -57.99 16 24 Si 0.96 47.81 29.55 68.60 2.03 49.84 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 28 C 0.11 3.95 6.02 86.38 0.52 4.47 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.12 1.13 7.94 -2.39 -0.02 1.11 16 37 H 0.11 1.22 7.69 -2.39 -0.02 1.20 16 38 H 0.13 0.62 5.93 -2.39 -0.01 0.61 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.40 7.85 -2.39 -0.02 1.39 16 41 H 0.13 1.27 7.77 -2.38 -0.02 1.26 16 42 H 0.38 19.77 6.54 -92.71 -0.61 19.17 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.86 374.72 5.31 -75.55 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.40 Total: 18.36 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 5.16 Total: 21.95 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.39 Total: -112.47 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.03 Total: -35.62 kcal Atomic # 9 Polarization: -19.74 SS G_CDS: 2.15 Total: -17.60 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -80.86 5.31 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333014550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.947 kcal (2) G-P(sol) polarization free energy of solvation -80.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds