Wall clock time and date at job start Tue Mar 31 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 O 1.42898 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99903 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46712 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00313 * 359.97438 * 6 5 4 8 8 N 1.34787 * 119.99759 * 180.02562 * 6 5 4 9 9 C 1.46924 * 120.63033 * 359.72119 * 8 6 5 10 10 C 1.53194 * 108.77334 * 233.88527 * 9 8 6 11 11 C 1.53038 * 109.31101 * 305.36035 * 10 9 8 12 12 H 1.08993 * 109.45369 * 301.35673 * 11 10 9 13 13 C 1.52997 * 109.45866 * 181.38783 * 11 10 9 14 14 F 1.39901 * 109.46979 * 299.93420 * 13 11 10 15 15 F 1.39902 * 109.47351 * 59.93525 * 13 11 10 16 16 F 1.39898 * 109.47228 * 179.97438 * 13 11 10 17 17 C 1.53045 * 109.53516 * 61.36880 * 11 10 9 18 18 H 1.09002 * 109.52459 * 178.66271 * 17 11 10 19 19 N 1.46508 * 109.49746 * 58.58541 * 17 11 10 20 20 C 1.36937 * 119.99849 * 155.15881 * 19 17 11 21 21 H 1.07998 * 120.00026 * 0.02562 * 20 19 17 22 22 C 1.38807 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00173 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00027 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47530 * 89.99234 * 24 22 20 26 26 H 1.48501 * 109.47151 * 209.99861 * 24 22 20 27 27 H 1.48504 * 109.46766 * 329.99324 * 24 22 20 28 28 C 1.46926 * 120.62918 * 180.02562 * 8 6 5 29 29 H 1.09003 * 109.47300 * 299.99995 * 1 2 3 30 30 H 1.08990 * 109.47010 * 60.00470 * 1 2 3 31 31 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47449 * 239.99724 * 2 1 3 33 33 H 1.09007 * 109.47214 * 119.99773 * 2 1 3 34 34 H 1.08999 * 109.47600 * 59.99416 * 3 2 1 35 35 H 1.09007 * 109.46852 * 299.99995 * 3 2 1 36 36 H 1.08998 * 109.47091 * 60.00200 * 5 4 3 37 37 H 1.09001 * 109.47452 * 300.00102 * 5 4 3 38 38 H 1.09004 * 109.58777 * 353.67036 * 9 8 6 39 39 H 1.08994 * 109.58607 * 114.09373 * 9 8 6 40 40 H 1.09005 * 109.49558 * 185.41228 * 10 9 8 41 41 H 1.09001 * 109.49919 * 65.31913 * 10 9 8 42 42 H 0.96996 * 119.99641 * 335.16359 * 19 17 11 43 43 H 0.96996 * 119.99742 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.58178 * 245.90575 * 28 8 6 45 45 H 1.08998 * 109.58625 * 6.18591 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6289 0.0014 7 8 6.0741 1.5341 0.0032 8 7 6.3165 3.7394 0.0017 9 6 5.6993 5.0727 -0.0054 10 6 6.2736 5.8756 -1.1769 11 6 7.8009 5.8905 -1.0796 12 1 8.0997 6.3307 -0.1283 13 6 8.3766 6.7206 -2.2286 14 9 7.9937 6.1555 -3.4498 15 9 7.8900 8.0298 -2.1477 16 9 9.7727 6.7350 -2.1397 17 6 8.3334 4.4585 -1.1684 18 1 9.4224 4.4712 -1.1230 19 7 7.9038 3.8545 -2.4322 20 6 8.6259 2.8287 -2.9812 21 1 9.5119 2.4646 -2.4824 22 6 8.2186 2.2562 -4.1783 23 7 8.9124 1.2699 -4.7057 24 14 6.6858 2.8855 -5.0408 25 1 7.0571 3.9774 -5.9762 26 1 6.0544 1.7764 -5.8001 27 1 5.7272 3.4029 -4.0315 28 6 7.7823 3.6395 0.0024 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.7282 3.2894 0.8896 37 1 3.7289 3.2884 -0.8903 38 1 4.6200 4.9751 -0.1236 39 1 5.9216 5.5832 0.9315 40 1 5.8965 6.8976 -1.1370 41 1 5.9734 5.4129 -2.1170 42 1 7.1079 4.1814 -2.8801 43 1 8.6280 0.8701 -5.5424 44 1 8.1749 4.0330 0.9401 45 1 8.0775 2.5961 -0.1080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333014552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:26 Heat of formation + Delta-G solvation = -214.348483 kcal Electronic energy + Delta-G solvation = -31951.592275 eV Core-core repulsion = 27168.956812 eV Total energy + Delta-G solvation = -4782.635463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.74251 -47.29233 -47.10303 -40.10722 -38.29563 -37.18416 -34.43771 -33.79680 -32.85580 -31.42238 -29.63979 -28.58285 -26.74809 -25.55698 -23.68488 -23.51369 -22.32902 -21.71973 -20.35201 -18.85671 -18.11107 -17.92489 -17.82636 -17.42987 -16.80284 -16.56685 -16.33721 -15.49183 -15.23356 -14.77209 -14.67330 -14.24337 -14.22521 -14.00366 -13.92215 -13.62810 -13.50072 -13.32063 -13.29251 -13.13661 -13.07289 -12.92112 -12.60412 -12.48098 -12.23926 -12.13326 -12.08315 -11.76829 -11.34452 -11.07856 -11.04564 -11.02032 -10.97417 -10.81098 -10.45454 -10.15703 -9.75823 -9.55336 -9.39666 -9.08180 -8.40031 -7.26866 -5.73487 -3.10376 2.80999 2.92603 3.09622 3.36504 3.41808 3.46644 3.79410 4.05394 4.14796 4.33321 4.59995 4.62173 4.71936 4.77396 4.86929 4.93645 4.99338 5.05082 5.10305 5.14414 5.15156 5.20564 5.25539 5.30338 5.34897 5.39291 5.53221 5.58732 5.65642 5.77715 5.78456 5.89672 5.95711 6.05209 6.11800 6.18990 6.48078 6.75394 7.04660 7.61586 7.96373 8.43177 8.51756 9.18923 9.91862 10.06870 11.44652 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.004330 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.568159 B = 6464.645872 C = 7669.016954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.361 6.361 5 C 0.047 3.953 6 C 0.516 3.484 7 O -0.502 6.502 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.138 4.138 11 C -0.142 4.142 12 H 0.115 0.885 13 C 0.458 3.542 14 F -0.166 7.166 15 F -0.196 7.196 16 F -0.182 7.182 17 C 0.170 3.830 18 H 0.083 0.917 19 N -0.735 5.735 20 C -0.243 4.243 21 H 0.092 0.908 22 C 0.016 3.984 23 N -0.928 5.928 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.098 3.902 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.364 0.636 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 11.175 12.910 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.279 6.279 5 C -0.033 4.033 6 C 0.302 3.698 7 O -0.374 6.374 8 N -0.340 5.340 9 C -0.009 4.009 10 C -0.176 4.176 11 C -0.162 4.162 12 H 0.133 0.867 13 C 0.404 3.596 14 F -0.147 7.147 15 F -0.178 7.178 16 F -0.163 7.163 17 C 0.058 3.942 18 H 0.101 0.899 19 N -0.379 5.379 20 C -0.372 4.372 21 H 0.110 0.890 22 C -0.181 4.181 23 N -0.575 5.575 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.209 1.209 28 C -0.026 4.026 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.199 0.801 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.532 10.190 12.797 20.607 hybrid contribution -1.227 0.972 -1.040 1.879 sum -13.758 11.162 11.757 21.263 Atomic orbital electron populations 1.21691 0.94808 1.02222 1.01836 1.21453 0.95427 0.95524 1.03851 1.22611 0.80885 0.98238 0.99965 1.88043 1.19210 1.25351 1.95327 1.22245 0.92565 0.86732 1.01795 1.20017 0.88127 0.84504 0.77157 1.90759 1.74053 1.25875 1.46762 1.47840 1.07186 1.04779 1.74207 1.21608 0.97775 0.83527 0.97952 1.21993 0.93006 1.01617 1.00996 1.22807 0.97935 0.98835 0.96658 0.86715 1.20434 0.76229 0.77787 0.85179 1.93236 1.90665 1.84242 1.46558 1.93127 1.87943 1.40164 1.96551 1.93164 1.30421 1.96366 1.96378 1.20576 0.98564 0.86841 0.88198 0.89906 1.42818 1.31258 1.41790 1.22070 1.18949 1.06870 1.07948 1.03447 0.88975 1.24562 0.98045 0.97815 0.97641 1.69683 1.40350 1.26711 1.20792 0.86640 0.84371 0.78114 0.79836 1.20928 1.21772 1.20891 1.22436 0.77989 1.04702 0.97520 0.92660 0.92556 0.92003 0.90778 0.90962 0.93407 0.93292 0.90777 0.90648 0.89795 0.90708 0.89582 0.89939 0.80065 0.93061 0.92339 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.30 6.30 -26.73 -0.17 -1.47 16 3 C 0.06 0.67 5.94 37.16 0.22 0.89 16 4 O -0.36 -5.71 9.88 -55.14 -0.54 -6.25 16 5 C 0.05 0.63 4.77 36.01 0.17 0.80 16 6 C 0.52 9.15 7.78 -10.98 -0.09 9.07 16 7 O -0.50 -11.63 15.91 -14.35 -0.23 -11.86 16 8 N -0.60 -9.03 2.89 -172.80 -0.50 -9.53 16 9 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 10 C -0.14 -1.60 4.95 -26.61 -0.13 -1.74 16 11 C -0.14 -1.88 2.02 -90.58 -0.18 -2.06 16 12 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.46 7.10 2.69 37.16 0.10 7.20 16 14 F -0.17 -3.19 14.40 2.25 0.03 -3.15 16 15 F -0.20 -2.71 16.77 2.25 0.04 -2.67 16 16 F -0.18 -3.01 16.77 2.25 0.04 -2.97 16 17 C 0.17 2.93 2.45 -67.83 -0.17 2.77 16 18 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 19 N -0.74 -16.63 3.49 -53.33 -0.19 -16.82 16 20 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 22 C 0.02 0.47 5.50 -17.43 -0.10 0.37 16 23 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 24 Si 0.88 23.03 27.74 -169.99 -4.71 18.32 16 25 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.28 -6.93 6.52 56.52 0.37 -6.56 16 28 C 0.10 1.59 6.04 -3.74 -0.02 1.57 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.72 7.95 -51.93 -0.41 0.30 16 37 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 38 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.77 7.76 -51.93 -0.40 0.36 16 41 H 0.08 1.21 6.11 -51.93 -0.32 0.89 16 42 H 0.36 8.29 2.80 -40.82 -0.11 8.17 16 43 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 2.19 7.00 -51.93 -0.36 1.82 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -36.61 368.37 -6.45 -43.06 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.54 Total: 4.58 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.17 Total: 10.81 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.09 Total: -55.41 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.77 Total: -18.11 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.61 -6.45 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333014552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.291 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds