Wall clock time and date at job start Tue Mar 31 2020 21:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49648 * 2 1 4 4 C 1.53039 * 109.50176 * 239.93075 * 2 1 3 5 5 C 1.53035 * 109.54059 * 178.65010 * 4 2 1 6 6 C 1.53194 * 109.31314 * 61.36398 * 5 4 2 7 7 N 1.46918 * 108.77488 * 305.36615 * 6 5 4 8 8 C 1.34778 * 120.63034 * 233.58071 * 7 6 5 9 9 O 1.21569 * 119.99934 * 173.36418 * 8 7 6 10 10 C 1.47725 * 120.00015 * 353.37300 * 8 7 6 11 11 C 1.39658 * 120.10773 * 324.27971 * 10 8 7 12 12 C 1.37849 * 119.92308 * 179.69822 * 11 10 8 13 13 C 1.38604 * 120.14918 * 0.58613 * 12 11 10 14 14 F 1.35099 * 119.89001 * 179.69862 * 13 12 11 15 15 C 1.38838 * 120.21997 * 359.70921 * 13 12 11 16 16 F 1.35094 * 119.96348 * 180.02562 * 15 13 12 17 17 C 1.38058 * 120.07122 * 359.97438 * 15 13 12 18 18 C 1.46930 * 118.74108 * 53.60895 * 7 6 5 19 19 H 1.08998 * 109.58377 * 66.17218 * 18 7 6 20 20 C 1.53001 * 109.58839 * 186.60252 * 18 7 6 21 21 N 1.46506 * 109.46706 * 289.63993 * 20 18 7 22 22 C 1.36940 * 119.99541 * 179.42415 * 21 20 18 23 23 H 1.08000 * 119.99824 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99907 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99771 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99884 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47271 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47046 * 120.00012 * 26 24 22 29 29 H 1.48497 * 109.47029 * 239.99357 * 26 24 22 30 30 H 1.09003 * 109.46428 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47572 * 299.99969 * 1 2 3 32 32 H 1.08992 * 109.47313 * 60.00831 * 1 2 3 33 33 H 1.08997 * 109.45872 * 298.67100 * 4 2 1 34 34 H 1.09004 * 109.45668 * 58.62613 * 4 2 1 35 35 H 1.08996 * 109.49802 * 181.31992 * 5 4 2 36 36 H 1.09010 * 109.49746 * 301.38198 * 5 4 2 37 37 H 1.09004 * 109.58328 * 65.15617 * 6 5 4 38 38 H 1.09000 * 109.58095 * 185.43492 * 6 5 4 39 39 H 1.07998 * 120.03568 * 359.97438 * 11 10 8 40 40 H 1.07997 * 119.92093 * 180.31837 * 12 11 10 41 41 H 1.08005 * 120.07530 * 180.02562 * 17 15 13 42 42 H 1.08998 * 109.47046 * 49.63576 * 20 18 7 43 43 H 1.08994 * 109.46964 * 169.64128 * 20 18 7 44 44 H 0.96994 * 120.00490 * 359.41852 * 21 20 18 45 45 H 0.97004 * 119.99565 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 3.5709 -0.6940 -1.2665 6 6 4.1060 -1.4254 -0.0314 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3851 2.1776 9 8 3.7835 0.2150 3.1100 10 6 5.7386 -0.6286 2.1500 11 6 6.2399 -1.8196 1.6201 12 6 7.6003 -2.0402 1.5906 13 6 8.4711 -1.0880 2.0966 14 9 9.8031 -1.3122 2.0705 15 6 7.9791 0.0955 2.6304 16 9 8.8326 1.0203 3.1217 17 6 6.6187 0.3287 2.6586 18 6 2.0420 -0.7236 1.2495 19 1 1.6065 -1.7216 1.2979 20 6 1.6523 0.0705 2.4979 21 7 1.9357 -0.7283 3.6928 22 6 1.6777 -0.2156 4.9361 23 1 1.2657 0.7778 5.0357 24 6 1.9466 -0.9722 6.0684 25 7 2.4492 -2.1825 5.9470 26 14 1.5953 -0.2725 7.7644 27 1 1.0375 1.0971 7.6291 28 1 0.6142 -1.1402 8.4644 29 1 2.8554 -0.2181 8.5482 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6973 -1.7571 -1.2353 34 1 1.6577 -0.2244 -2.1389 35 1 3.9335 -1.1884 -2.1677 36 1 3.9155 0.3402 -1.2552 37 1 3.8388 -2.4807 -0.0874 38 1 5.1905 -1.3248 0.0114 39 1 5.5628 -2.5649 1.2299 40 1 7.9882 -2.9589 1.1761 41 1 6.2359 1.2495 3.0735 42 1 2.2277 0.9955 2.5343 43 1 0.5886 0.3054 2.4617 44 1 2.3060 -1.6203 3.6034 45 1 2.6368 -2.7114 6.7382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482494451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:53 Heat of formation + Delta-G solvation = -41.814147 kcal Electronic energy + Delta-G solvation = -30720.022813 eV Core-core repulsion = 26375.638226 eV Total energy + Delta-G solvation = -4344.384588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.51715 -48.58747 -40.64731 -38.63762 -37.09456 -34.67888 -33.59370 -32.16108 -31.09920 -30.66698 -30.07406 -27.05019 -26.11617 -24.45222 -23.35573 -23.19823 -22.32536 -21.08326 -20.37482 -19.44647 -17.85632 -17.62789 -17.11657 -16.77041 -16.36323 -15.92192 -15.46350 -15.09376 -14.99814 -14.78433 -14.62792 -14.39794 -14.30075 -14.05379 -13.89479 -13.45504 -13.10388 -12.99740 -12.83742 -12.67465 -12.43648 -12.27089 -12.13823 -11.99321 -11.72014 -11.48494 -11.33784 -10.99065 -10.88515 -10.73378 -10.63228 -10.58067 -10.16814 -9.82657 -9.55018 -9.18427 -8.81139 -8.78015 -8.38181 -8.14219 -6.57260 -5.59578 -2.78106 0.60370 0.91763 2.91017 3.19648 3.52844 3.58801 3.60687 3.67453 3.71056 4.25513 4.46637 4.56548 4.69416 4.71117 4.81470 4.86136 4.92402 5.01819 5.03400 5.27465 5.39222 5.50948 5.57491 5.66465 5.69088 5.70882 5.74332 5.75636 5.78126 5.79876 5.87461 5.89200 5.96497 6.08051 6.11286 6.14509 6.29360 6.40570 6.54753 6.58545 6.65135 6.90660 7.23668 7.82319 7.86036 8.58521 8.77741 9.70026 10.28149 10.62389 11.64252 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007828 B = 0.005294 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.252929 B = 5287.765908 C = 8080.342257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.097 3.903 7 N -0.609 5.609 8 C 0.517 3.483 9 O -0.429 6.429 10 C -0.087 4.087 11 C -0.079 4.079 12 C -0.132 4.132 13 C 0.073 3.927 14 F -0.130 7.130 15 C 0.063 3.937 16 F -0.129 7.129 17 C -0.078 4.078 18 C 0.150 3.850 19 H 0.070 0.930 20 C 0.155 3.845 21 N -0.698 5.698 22 C -0.202 4.202 23 H 0.066 0.934 24 C -0.022 4.022 25 N -0.937 5.937 26 Si 0.901 3.099 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.378 0.622 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 0.538 -18.858 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.026 4.026 7 N -0.347 5.347 8 C 0.302 3.698 9 O -0.297 6.297 10 C -0.091 4.091 11 C -0.097 4.097 12 C -0.151 4.151 13 C 0.053 3.947 14 F -0.109 7.109 15 C 0.043 3.957 16 F -0.107 7.107 17 C -0.097 4.097 18 C 0.047 3.953 19 H 0.088 0.912 20 C 0.027 3.973 21 N -0.340 5.340 22 C -0.334 4.334 23 H 0.084 0.916 24 C -0.217 4.217 25 N -0.588 5.588 26 Si 0.734 3.266 27 H -0.208 1.208 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.211 0.789 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.333 1.055 -18.126 19.229 hybrid contribution 0.582 -0.027 1.062 1.212 sum 6.915 1.028 -17.063 18.440 Atomic orbital electron populations 1.21844 0.94441 1.02108 1.02022 1.21475 0.96034 1.00033 0.94357 0.90860 1.21578 0.95027 1.00851 0.97620 1.21930 0.96407 1.01359 0.97579 1.22062 0.98841 0.96963 0.84757 1.47671 1.06241 1.63059 1.17698 1.17980 0.85026 0.83486 0.83352 1.91201 1.71313 1.35202 1.32034 1.20121 0.95009 0.94688 0.99269 1.21460 0.94562 0.96800 0.96913 1.20974 0.92882 0.99247 1.02015 1.17829 0.78232 0.94967 1.03690 1.91518 1.30129 1.94699 1.94534 1.17490 0.88146 0.87603 1.02455 1.91530 1.69573 1.64057 1.85549 1.21109 0.89561 1.01283 0.97790 1.21539 0.78351 0.99617 0.95803 0.91232 1.21061 0.96180 0.95441 0.84587 1.42278 1.75042 1.16114 1.00538 1.19179 1.32106 0.98437 0.83647 0.91578 1.24615 1.02934 0.96764 0.97360 1.69656 1.51255 1.10159 1.27690 0.86169 0.77193 0.77870 0.85386 1.20785 1.22279 1.22237 0.92594 0.91548 0.92897 0.91825 0.91976 0.91095 0.91587 0.91629 0.89173 0.83356 0.83380 0.82852 0.93498 0.96529 0.78851 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.98 37.16 0.33 -1.32 16 2 C -0.10 -1.19 2.34 -90.50 -0.21 -1.40 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.07 5.17 -26.69 -0.14 -1.20 16 5 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 6 C 0.10 0.99 4.76 -3.71 -0.02 0.98 16 7 N -0.61 -8.94 2.97 -166.37 -0.49 -9.43 16 8 C 0.52 9.20 6.90 -12.38 -0.09 9.11 16 9 O -0.43 -9.80 10.55 5.30 0.06 -9.75 16 10 C -0.09 -1.30 5.26 -104.97 -0.55 -1.86 16 11 C -0.08 -0.93 7.36 -39.19 -0.29 -1.22 16 12 C -0.13 -1.42 10.01 -39.59 -0.40 -1.82 16 13 C 0.07 0.94 7.31 -39.22 -0.29 0.66 16 14 F -0.13 -1.71 17.17 2.25 0.04 -1.67 16 15 C 0.06 0.90 7.30 -39.43 -0.29 0.61 16 16 F -0.13 -1.91 17.17 2.25 0.04 -1.88 16 17 C -0.08 -1.16 9.59 -39.13 -0.38 -1.54 16 18 C 0.15 2.34 2.38 -67.60 -0.16 2.18 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 20 C 0.15 3.16 4.81 -4.04 -0.02 3.14 16 21 N -0.70 -17.90 3.32 -59.91 -0.20 -18.10 16 22 C -0.20 -5.83 9.47 -15.06 -0.14 -5.97 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 25 N -0.94 -29.17 13.06 55.49 0.72 -28.44 16 26 Si 0.90 23.55 29.55 -169.99 -5.02 18.52 16 27 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 29 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.84 6.42 -51.93 -0.33 0.51 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 38 H 0.09 0.83 4.57 -51.93 -0.24 0.59 16 39 H 0.15 1.49 6.12 -52.49 -0.32 1.17 16 40 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.15 2.34 8.01 -52.48 -0.42 1.92 16 42 H 0.05 1.05 6.20 -51.93 -0.32 0.73 16 43 H 0.02 0.35 6.22 -51.93 -0.32 0.02 16 44 H 0.38 10.33 7.40 -40.82 -0.30 10.03 16 45 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -33.59 360.64 -8.34 -41.93 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.03 Total: 5.14 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.89 Total: -1.76 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.03 Total: -55.98 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.75 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.59 -8.34 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.113 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds