Wall clock time and date at job start Tue Mar 31 2020 21:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49648 * 2 1 4 4 C 1.53039 * 109.50176 * 239.93075 * 2 1 3 5 5 C 1.53035 * 109.54059 * 178.65010 * 4 2 1 6 6 C 1.53194 * 109.31314 * 61.36398 * 5 4 2 7 7 N 1.46918 * 108.77488 * 305.36615 * 6 5 4 8 8 C 1.34778 * 120.63034 * 233.58071 * 7 6 5 9 9 O 1.21569 * 119.99934 * 173.36418 * 8 7 6 10 10 C 1.47725 * 120.00015 * 353.37300 * 8 7 6 11 11 C 1.39658 * 120.10773 * 324.27971 * 10 8 7 12 12 C 1.37849 * 119.92308 * 179.69822 * 11 10 8 13 13 C 1.38604 * 120.14918 * 0.58613 * 12 11 10 14 14 F 1.35099 * 119.89001 * 179.69862 * 13 12 11 15 15 C 1.38838 * 120.21997 * 359.70921 * 13 12 11 16 16 F 1.35094 * 119.96348 * 180.02562 * 15 13 12 17 17 C 1.38058 * 120.07122 * 359.97438 * 15 13 12 18 18 C 1.46930 * 118.74108 * 53.60895 * 7 6 5 19 19 H 1.08998 * 109.58377 * 66.17218 * 18 7 6 20 20 C 1.53001 * 109.58839 * 186.60252 * 18 7 6 21 21 N 1.46506 * 109.46706 * 289.63993 * 20 18 7 22 22 C 1.36940 * 119.99541 * 179.42415 * 21 20 18 23 23 H 1.08000 * 119.99824 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99907 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99771 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99884 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47271 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47046 * 120.00012 * 26 24 22 29 29 H 1.48497 * 109.47029 * 239.99357 * 26 24 22 30 30 H 1.09003 * 109.46428 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47572 * 299.99969 * 1 2 3 32 32 H 1.08992 * 109.47313 * 60.00831 * 1 2 3 33 33 H 1.08997 * 109.45872 * 298.67100 * 4 2 1 34 34 H 1.09004 * 109.45668 * 58.62613 * 4 2 1 35 35 H 1.08996 * 109.49802 * 181.31992 * 5 4 2 36 36 H 1.09010 * 109.49746 * 301.38198 * 5 4 2 37 37 H 1.09004 * 109.58328 * 65.15617 * 6 5 4 38 38 H 1.09000 * 109.58095 * 185.43492 * 6 5 4 39 39 H 1.07998 * 120.03568 * 359.97438 * 11 10 8 40 40 H 1.07997 * 119.92093 * 180.31837 * 12 11 10 41 41 H 1.08005 * 120.07530 * 180.02562 * 17 15 13 42 42 H 1.08998 * 109.47046 * 49.63576 * 20 18 7 43 43 H 1.08994 * 109.46964 * 169.64128 * 20 18 7 44 44 H 0.96994 * 120.00490 * 359.41852 * 21 20 18 45 45 H 0.97004 * 119.99565 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 3.5709 -0.6940 -1.2665 6 6 4.1060 -1.4254 -0.0314 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3851 2.1776 9 8 3.7835 0.2150 3.1100 10 6 5.7386 -0.6286 2.1500 11 6 6.2399 -1.8196 1.6201 12 6 7.6003 -2.0402 1.5906 13 6 8.4711 -1.0880 2.0966 14 9 9.8031 -1.3122 2.0705 15 6 7.9791 0.0955 2.6304 16 9 8.8326 1.0203 3.1217 17 6 6.6187 0.3287 2.6586 18 6 2.0420 -0.7236 1.2495 19 1 1.6065 -1.7216 1.2979 20 6 1.6523 0.0705 2.4979 21 7 1.9357 -0.7283 3.6928 22 6 1.6777 -0.2156 4.9361 23 1 1.2657 0.7778 5.0357 24 6 1.9466 -0.9722 6.0684 25 7 2.4492 -2.1825 5.9470 26 14 1.5953 -0.2725 7.7644 27 1 1.0375 1.0971 7.6291 28 1 0.6142 -1.1402 8.4644 29 1 2.8554 -0.2181 8.5482 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6973 -1.7571 -1.2353 34 1 1.6577 -0.2244 -2.1389 35 1 3.9335 -1.1884 -2.1677 36 1 3.9155 0.3402 -1.2552 37 1 3.8388 -2.4807 -0.0874 38 1 5.1905 -1.3248 0.0114 39 1 5.5628 -2.5649 1.2299 40 1 7.9882 -2.9589 1.1761 41 1 6.2359 1.2495 3.0735 42 1 2.2277 0.9955 2.5343 43 1 0.5886 0.3054 2.4617 44 1 2.3060 -1.6203 3.6034 45 1 2.6368 -2.7114 6.7382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482494451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:52 Heat of formation + Delta-G solvation = -62.117111 kcal Electronic energy + Delta-G solvation = -30720.903216 eV Core-core repulsion = 26375.638226 eV Total energy + Delta-G solvation = -4345.264990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.61856 -49.69543 -41.87948 -39.73371 -38.33130 -36.35617 -34.89434 -33.65263 -32.20656 -31.92456 -31.56574 -28.45272 -27.13706 -26.02786 -24.71171 -24.30655 -23.70723 -22.28484 -21.44185 -20.61585 -19.20788 -18.90910 -18.44106 -18.22314 -17.46512 -17.10004 -16.81048 -16.55802 -16.15794 -16.10445 -15.71777 -15.52983 -15.48260 -15.44497 -15.11485 -14.95944 -14.55304 -14.16222 -14.01239 -13.86352 -13.67197 -13.59563 -13.29246 -13.11901 -12.94886 -12.83504 -12.73927 -12.55146 -12.35720 -12.07512 -11.88841 -11.80537 -11.58750 -11.46468 -11.09833 -10.88030 -10.24282 -10.04467 -9.74280 -9.44170 -8.62792 -7.84218 -5.02422 -0.49250 -0.13409 1.42437 1.44606 1.53352 1.74259 2.00536 2.45109 2.61380 2.64237 3.18720 3.39077 3.49434 3.51912 3.78076 3.78648 3.90402 3.92598 3.99171 4.16978 4.31518 4.36601 4.44207 4.55742 4.60525 4.61425 4.66651 4.75226 4.81450 4.84220 4.88064 4.91289 4.99524 5.04715 5.08520 5.17652 5.28020 5.32564 5.35636 5.45361 5.54058 5.55509 5.59132 5.84476 6.38011 6.58644 7.42143 7.47154 8.23408 8.46390 9.40540 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007828 B = 0.005294 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.252929 B = 5287.765908 C = 8080.342257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.087 3.913 7 N -0.603 5.603 8 C 0.518 3.482 9 O -0.499 6.499 10 C -0.106 4.106 11 C -0.064 4.064 12 C -0.109 4.109 13 C 0.078 3.922 14 F -0.129 7.129 15 C 0.049 3.951 16 F -0.137 7.137 17 C -0.090 4.090 18 C 0.155 3.845 19 H 0.067 0.933 20 C 0.159 3.841 21 N -0.705 5.705 22 C -0.200 4.200 23 H 0.058 0.942 24 C -0.083 4.083 25 N -0.971 5.971 26 Si 0.960 3.040 27 H -0.273 1.273 28 H -0.291 1.291 29 H -0.301 1.301 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.193 0.807 41 H 0.135 0.865 42 H 0.025 0.975 43 H 0.015 0.985 44 H 0.367 0.633 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -1.088 -22.127 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.167 4.167 6 C -0.034 4.034 7 N -0.339 5.339 8 C 0.305 3.695 9 O -0.372 6.372 10 C -0.110 4.110 11 C -0.082 4.082 12 C -0.127 4.127 13 C 0.058 3.942 14 F -0.107 7.107 15 C 0.029 3.971 16 F -0.116 7.116 17 C -0.109 4.109 18 C 0.052 3.948 19 H 0.085 0.915 20 C 0.032 3.968 21 N -0.346 5.346 22 C -0.333 4.333 23 H 0.076 0.924 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.791 3.209 27 H -0.198 1.198 28 H -0.219 1.219 29 H -0.229 1.229 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.193 0.807 40 H 0.210 0.790 41 H 0.153 0.847 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.199 0.801 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.167 -0.555 -21.488 22.658 hybrid contribution 0.443 0.529 1.901 2.023 sum 7.610 -0.026 -19.586 21.013 Atomic orbital electron populations 1.21826 0.93840 1.02433 1.02088 1.21426 0.96497 0.99298 0.93944 0.91965 1.21573 0.95500 1.01110 0.96378 1.21929 0.95813 1.01086 0.97905 1.22478 0.99619 0.98094 0.83259 1.47833 1.05755 1.61904 1.18386 1.18539 0.86348 0.81782 0.82873 1.91179 1.72795 1.38654 1.34546 1.20006 0.93303 0.96399 1.01254 1.21721 0.95595 0.95560 0.95334 1.21378 0.91715 0.99737 0.99904 1.18013 0.78569 0.94601 1.03012 1.91529 1.30170 1.94591 1.94447 1.17586 0.87706 0.88374 1.03441 1.91502 1.69653 1.64596 1.85844 1.20997 0.90243 1.01193 0.98502 1.21411 0.79282 0.98927 0.95164 0.91538 1.21049 0.95451 0.94956 0.85311 1.42280 1.75335 1.15970 1.01002 1.19414 1.30625 0.97841 0.85388 0.92381 1.25275 1.04222 0.97436 1.00493 1.69792 1.53549 1.11282 1.27873 0.85232 0.76577 0.77639 0.81432 1.19824 1.21878 1.22946 0.92109 0.93836 0.90475 0.90868 0.89904 0.87652 0.92435 0.89376 0.87775 0.80736 0.78965 0.84663 0.95706 0.96720 0.80140 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.98 71.98 0.65 -2.41 16 2 C -0.09 -2.08 2.34 -10.72 -0.03 -2.10 16 3 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -1.62 5.17 30.62 0.16 -1.46 16 5 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 6 C 0.09 1.47 4.76 86.36 0.41 1.88 16 7 N -0.60 -17.22 2.97 -798.54 -2.37 -19.59 16 8 C 0.52 18.90 6.90 86.75 0.60 19.50 16 9 O -0.50 -24.21 10.55 -3.93 -0.04 -24.25 16 10 C -0.11 -3.15 5.26 -20.09 -0.11 -3.25 16 11 C -0.06 -1.32 7.36 22.52 0.17 -1.15 16 12 C -0.11 -1.89 10.01 22.26 0.22 -1.67 16 13 C 0.08 1.83 7.31 22.50 0.16 2.00 16 14 F -0.13 -3.05 17.17 44.97 0.77 -2.28 16 15 C 0.05 1.39 7.30 22.37 0.16 1.55 16 16 F -0.14 -4.16 17.17 44.97 0.77 -3.39 16 17 C -0.09 -2.78 9.59 22.56 0.22 -2.56 16 18 C 0.16 4.84 2.38 44.97 0.11 4.94 16 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 20 C 0.16 6.81 4.81 86.38 0.42 7.22 16 21 N -0.71 -37.92 3.32 -343.45 -1.14 -39.06 16 22 C -0.20 -12.06 9.47 84.03 0.80 -11.26 16 23 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 24 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 25 N -0.97 -62.52 13.06 21.65 0.28 -62.24 16 26 Si 0.96 50.14 29.55 68.60 2.03 52.17 16 27 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 29 H -0.30 -15.92 7.11 99.48 0.71 -15.22 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.11 6.42 -2.39 -0.02 1.09 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.09 1.19 8.04 -2.39 -0.02 1.17 16 38 H 0.10 1.49 4.57 -2.39 -0.01 1.48 16 39 H 0.18 2.71 6.12 -2.91 -0.02 2.69 16 40 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.14 4.57 8.01 -2.91 -0.02 4.54 16 42 H 0.03 1.20 6.20 -2.39 -0.01 1.18 16 43 H 0.02 0.65 6.22 -2.39 -0.01 0.63 16 44 H 0.37 20.91 7.40 -92.71 -0.69 20.22 16 45 H 0.24 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -78.75 360.64 5.23 -73.51 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.35 Total: 20.12 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.59 Total: 5.01 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -3.23 Total: -120.89 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.54 Total: -5.67 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -78.75 5.23 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.398 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds