Wall clock time and date at job start Tue Mar 31 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49557 * 2 1 4 4 C 1.53046 * 109.52295 * 239.92017 * 2 1 3 5 5 C 1.53045 * 109.53599 * 301.39541 * 4 2 1 6 6 C 1.53185 * 109.31217 * 298.63509 * 5 4 2 7 7 N 1.46928 * 108.77894 * 54.63803 * 6 5 4 8 8 C 1.34767 * 120.63448 * 126.36711 * 7 6 5 9 9 O 1.21569 * 120.00356 * 186.43077 * 8 7 6 10 10 C 1.47738 * 120.00145 * 6.43410 * 8 7 6 11 11 C 1.39647 * 120.10781 * 218.31785 * 10 8 7 12 12 C 1.37856 * 119.92455 * 179.97438 * 11 10 8 13 13 C 1.38610 * 120.14345 * 359.97438 * 12 11 10 14 14 F 1.35099 * 119.88697 * 179.97438 * 13 12 11 15 15 C 1.38833 * 120.22310 * 359.97438 * 13 12 11 16 16 F 1.35098 * 119.96231 * 180.02562 * 15 13 12 17 17 C 1.38064 * 120.07264 * 359.78775 * 15 13 12 18 18 C 1.46924 * 118.73631 * 306.39035 * 7 6 5 19 19 H 1.09005 * 109.70597 * 293.74864 * 18 7 6 20 20 C 1.52997 * 109.59033 * 173.39621 * 18 7 6 21 21 N 1.46503 * 109.47151 * 69.60518 * 20 18 7 22 22 C 1.36931 * 119.99916 * 175.24315 * 21 20 18 23 23 H 1.07997 * 120.00269 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00049 * 180.27587 * 22 21 20 25 25 N 1.31623 * 119.99582 * 359.72610 * 24 22 21 26 26 Si 1.86795 * 119.99965 * 179.72059 * 24 22 21 27 27 H 1.48492 * 109.47358 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46909 * 120.00244 * 26 24 22 29 29 H 1.48497 * 109.47330 * 239.99800 * 26 24 22 30 30 H 1.09004 * 109.46661 * 299.93209 * 1 2 3 31 31 H 1.08994 * 109.46986 * 59.93601 * 1 2 3 32 32 H 1.09000 * 109.46633 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.45760 * 61.41549 * 4 2 1 34 34 H 1.08997 * 109.45942 * 181.37439 * 4 2 1 35 35 H 1.09005 * 109.49830 * 58.58627 * 5 4 2 36 36 H 1.09000 * 109.49313 * 178.68491 * 5 4 2 37 37 H 1.09003 * 109.58519 * 174.42077 * 6 5 4 38 38 H 1.08999 * 109.58709 * 294.70354 * 6 5 4 39 39 H 1.08001 * 120.04179 * 359.95157 * 11 10 8 40 40 H 1.07996 * 119.92600 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.07634 * 180.25610 * 17 15 13 42 42 H 1.09004 * 109.46691 * 309.60649 * 20 18 7 43 43 H 1.09003 * 109.47338 * 189.60996 * 20 18 7 44 44 H 0.97003 * 119.99746 * 355.24208 * 21 20 18 45 45 H 0.96995 * 119.99476 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2482 5 6 1.5043 -2.1560 -1.2658 6 6 2.0154 -2.9038 -0.0304 7 7 1.6523 -2.1380 1.1698 8 6 0.9748 -2.7218 2.1780 9 8 0.5783 -2.0522 3.1119 10 6 0.7141 -4.1757 2.1483 11 6 -0.5074 -4.6778 2.6023 12 6 -0.7469 -6.0350 2.5724 13 6 0.2219 -6.9024 2.0923 14 9 -0.0181 -8.2316 2.0658 15 6 1.4380 -6.4097 1.6385 16 9 2.3782 -7.2598 1.1712 17 6 1.6855 -5.0516 1.6597 18 6 2.0414 -0.7235 1.2498 19 1 3.1273 -0.6432 1.2998 20 6 1.4224 -0.0910 2.4978 21 7 2.0686 -0.6373 3.6938 22 6 1.7461 -0.1466 4.9308 23 1 1.0157 0.6434 5.0248 24 6 2.3625 -0.6602 6.0636 25 7 3.2531 -1.6227 5.9490 26 14 1.9283 0.0145 7.7504 27 1 0.9071 1.0831 7.6083 28 1 1.3857 -1.0788 8.5962 29 1 3.1467 0.5752 8.3879 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6994 -0.1959 -2.1388 34 1 3.1312 -0.7438 -1.2349 35 1 0.4145 -2.1362 -1.2541 36 1 1.8499 -2.6629 -2.1668 37 1 1.5572 -3.8918 0.0141 38 1 3.0991 -3.0058 -0.0874 39 1 -1.2635 -4.0036 2.9766 40 1 -1.6914 -6.4233 2.9238 41 1 2.6299 -4.6680 1.3029 42 1 0.3558 -0.3139 2.5272 43 1 1.5672 0.9890 2.4678 44 1 2.7248 -1.3466 3.6093 45 1 3.6840 -1.9813 6.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482494452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:55 Heat of formation + Delta-G solvation = -39.434009 kcal Electronic energy + Delta-G solvation = -31010.070291 eV Core-core repulsion = 26665.788913 eV Total energy + Delta-G solvation = -4344.281377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.53225 -48.60576 -40.73050 -38.70195 -37.11060 -34.60183 -33.48683 -32.13492 -30.99890 -30.50709 -30.04546 -27.08810 -26.17957 -24.51677 -23.50950 -23.32563 -22.60300 -21.23034 -20.21089 -18.71496 -17.86091 -17.61957 -17.03341 -16.74906 -16.38679 -16.05472 -15.53146 -15.19171 -15.03143 -14.90418 -14.59523 -14.35530 -14.16381 -14.13769 -13.86221 -13.56820 -13.11783 -13.05644 -12.87345 -12.55929 -12.40639 -12.31826 -12.06811 -12.01950 -11.58352 -11.50567 -11.26835 -11.01909 -10.88633 -10.74659 -10.65246 -10.35830 -10.20977 -9.86248 -9.55945 -9.12344 -8.82622 -8.81141 -8.38813 -8.13113 -6.57539 -5.60789 -2.79014 0.61912 0.90853 2.92561 3.25429 3.51220 3.57172 3.57959 3.59464 3.75411 4.24334 4.45220 4.57050 4.69621 4.74683 4.83932 4.87728 4.95105 4.99872 5.09038 5.27757 5.39835 5.49784 5.56095 5.63609 5.70778 5.73542 5.74700 5.77297 5.80148 5.86009 5.92413 5.93147 5.98207 6.11484 6.16213 6.17672 6.28474 6.46945 6.51251 6.58897 6.65416 6.89284 7.24907 7.83285 7.84296 8.57271 8.77901 9.68568 10.27767 10.61604 11.62838 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.005097 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.139621 B = 5491.881394 C = 7798.959196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.099 3.901 7 N -0.606 5.606 8 C 0.514 3.486 9 O -0.429 6.429 10 C -0.086 4.086 11 C -0.053 4.053 12 C -0.130 4.130 13 C 0.073 3.927 14 F -0.130 7.130 15 C 0.061 3.939 16 F -0.129 7.129 17 C -0.104 4.104 18 C 0.148 3.852 19 H 0.070 0.930 20 C 0.157 3.843 21 N -0.696 5.696 22 C -0.207 4.207 23 H 0.067 0.933 24 C -0.021 4.021 25 N -0.935 5.935 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.050 0.950 43 H 0.015 0.985 44 H 0.379 0.621 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 -6.018 -17.678 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.025 4.025 7 N -0.344 5.344 8 C 0.299 3.701 9 O -0.297 6.297 10 C -0.090 4.090 11 C -0.072 4.072 12 C -0.148 4.148 13 C 0.052 3.948 14 F -0.109 7.109 15 C 0.041 3.959 16 F -0.108 7.108 17 C -0.123 4.123 18 C 0.045 3.955 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.338 5.338 22 C -0.339 4.339 23 H 0.085 0.915 24 C -0.216 4.216 25 N -0.585 5.585 26 Si 0.735 3.265 27 H -0.208 1.208 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.212 0.788 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.029 -5.585 -16.989 18.872 hybrid contribution 0.376 -0.570 0.857 1.095 sum -5.653 -6.155 -16.133 18.169 Atomic orbital electron populations 1.21853 0.94869 1.02000 1.01413 1.21467 0.96730 0.99396 0.94369 0.90249 1.21535 1.00463 0.95427 0.97624 1.21964 1.01684 0.96301 0.97461 1.21988 0.99996 0.95637 0.84832 1.47634 1.58036 1.10988 1.17742 1.17976 0.82679 0.86088 0.83348 1.91209 1.45207 1.61333 1.31962 1.20169 0.94461 0.95002 0.99339 1.21149 0.96497 0.94303 0.95215 1.21012 0.99474 0.92900 1.01449 1.17834 0.94428 0.78322 1.04208 1.91517 1.94559 1.30395 1.94426 1.17492 0.86662 0.88180 1.03592 1.91527 1.63118 1.69877 1.86275 1.21410 1.01179 0.90150 0.99557 1.21527 0.98786 0.79331 0.95856 0.91241 1.21036 0.97584 0.93867 0.84568 1.42317 1.47204 1.43328 1.00978 1.19200 1.17077 1.13422 0.84157 0.91535 1.24634 1.00125 0.99425 0.97432 1.69662 1.31106 1.29957 1.27810 0.86159 0.77254 0.77875 0.85256 1.20772 1.22211 1.22265 0.91950 0.93437 0.92466 0.91984 0.91894 0.91136 0.91259 0.89521 0.91699 0.83401 0.83349 0.82991 0.93294 0.96776 0.78762 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.22 37.16 0.31 -1.42 16 2 C -0.10 -1.20 2.80 -90.49 -0.25 -1.45 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.08 5.43 -26.68 -0.14 -1.23 16 5 C -0.14 -1.24 5.74 -26.61 -0.15 -1.39 16 6 C 0.10 1.07 4.82 -3.71 -0.02 1.06 16 7 N -0.61 -8.90 2.41 -166.37 -0.40 -9.30 16 8 C 0.51 9.01 6.73 -12.38 -0.08 8.92 16 9 O -0.43 -9.56 10.72 5.30 0.06 -9.50 16 10 C -0.09 -1.27 5.19 -104.97 -0.54 -1.82 16 11 C -0.05 -0.70 9.62 -39.20 -0.38 -1.07 16 12 C -0.13 -1.50 10.01 -39.58 -0.40 -1.89 16 13 C 0.07 0.93 7.31 -39.22 -0.29 0.65 16 14 F -0.13 -1.71 17.17 2.25 0.04 -1.68 16 15 C 0.06 0.81 7.30 -39.43 -0.29 0.52 16 16 F -0.13 -1.77 17.17 2.25 0.04 -1.73 16 17 C -0.10 -1.38 7.34 -39.13 -0.29 -1.67 16 18 C 0.15 2.32 2.63 -67.60 -0.18 2.14 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.18 4.05 -4.04 -0.02 3.17 16 21 N -0.70 -17.87 3.25 -59.91 -0.19 -18.06 16 22 C -0.21 -5.95 9.71 -15.06 -0.15 -6.09 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 25 N -0.94 -29.13 13.06 55.49 0.72 -28.41 16 26 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 29 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 30 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.88 4.67 -51.93 -0.24 0.64 16 38 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.15 1.89 8.04 -52.49 -0.42 1.47 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 1.86 6.37 -52.49 -0.33 1.53 16 42 H 0.05 1.06 5.04 -51.93 -0.26 0.80 16 43 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16 44 H 0.38 10.40 7.10 -40.82 -0.29 10.11 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -33.12 356.40 -8.23 -41.35 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.88 Total: 5.95 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.96 Total: -2.31 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.13 Total: -55.77 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.06 Total: -9.50 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.12 -8.23 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.914 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds