Wall clock time and date at job start Tue Mar 31 2020 21:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49557 * 2 1 4 4 C 1.53046 * 109.52295 * 239.92017 * 2 1 3 5 5 C 1.53045 * 109.53599 * 301.39541 * 4 2 1 6 6 C 1.53185 * 109.31217 * 298.63509 * 5 4 2 7 7 N 1.46928 * 108.77894 * 54.63803 * 6 5 4 8 8 C 1.34767 * 120.63448 * 126.36711 * 7 6 5 9 9 O 1.21569 * 120.00356 * 186.43077 * 8 7 6 10 10 C 1.47738 * 120.00145 * 6.43410 * 8 7 6 11 11 C 1.39647 * 120.10781 * 218.31785 * 10 8 7 12 12 C 1.37856 * 119.92455 * 179.97438 * 11 10 8 13 13 C 1.38610 * 120.14345 * 359.97438 * 12 11 10 14 14 F 1.35099 * 119.88697 * 179.97438 * 13 12 11 15 15 C 1.38833 * 120.22310 * 359.97438 * 13 12 11 16 16 F 1.35098 * 119.96231 * 180.02562 * 15 13 12 17 17 C 1.38064 * 120.07264 * 359.78775 * 15 13 12 18 18 C 1.46924 * 118.73631 * 306.39035 * 7 6 5 19 19 H 1.09005 * 109.70597 * 293.74864 * 18 7 6 20 20 C 1.52997 * 109.59033 * 173.39621 * 18 7 6 21 21 N 1.46503 * 109.47151 * 69.60518 * 20 18 7 22 22 C 1.36931 * 119.99916 * 175.24315 * 21 20 18 23 23 H 1.07997 * 120.00269 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00049 * 180.27587 * 22 21 20 25 25 N 1.31623 * 119.99582 * 359.72610 * 24 22 21 26 26 Si 1.86795 * 119.99965 * 179.72059 * 24 22 21 27 27 H 1.48492 * 109.47358 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46909 * 120.00244 * 26 24 22 29 29 H 1.48497 * 109.47330 * 239.99800 * 26 24 22 30 30 H 1.09004 * 109.46661 * 299.93209 * 1 2 3 31 31 H 1.08994 * 109.46986 * 59.93601 * 1 2 3 32 32 H 1.09000 * 109.46633 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.45760 * 61.41549 * 4 2 1 34 34 H 1.08997 * 109.45942 * 181.37439 * 4 2 1 35 35 H 1.09005 * 109.49830 * 58.58627 * 5 4 2 36 36 H 1.09000 * 109.49313 * 178.68491 * 5 4 2 37 37 H 1.09003 * 109.58519 * 174.42077 * 6 5 4 38 38 H 1.08999 * 109.58709 * 294.70354 * 6 5 4 39 39 H 1.08001 * 120.04179 * 359.95157 * 11 10 8 40 40 H 1.07996 * 119.92600 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.07634 * 180.25610 * 17 15 13 42 42 H 1.09004 * 109.46691 * 309.60649 * 20 18 7 43 43 H 1.09003 * 109.47338 * 189.60996 * 20 18 7 44 44 H 0.97003 * 119.99746 * 355.24208 * 21 20 18 45 45 H 0.96995 * 119.99476 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2482 5 6 1.5043 -2.1560 -1.2658 6 6 2.0154 -2.9038 -0.0304 7 7 1.6523 -2.1380 1.1698 8 6 0.9748 -2.7218 2.1780 9 8 0.5783 -2.0522 3.1119 10 6 0.7141 -4.1757 2.1483 11 6 -0.5074 -4.6778 2.6023 12 6 -0.7469 -6.0350 2.5724 13 6 0.2219 -6.9024 2.0923 14 9 -0.0181 -8.2316 2.0658 15 6 1.4380 -6.4097 1.6385 16 9 2.3782 -7.2598 1.1712 17 6 1.6855 -5.0516 1.6597 18 6 2.0414 -0.7235 1.2498 19 1 3.1273 -0.6432 1.2998 20 6 1.4224 -0.0910 2.4978 21 7 2.0686 -0.6373 3.6938 22 6 1.7461 -0.1466 4.9308 23 1 1.0157 0.6434 5.0248 24 6 2.3625 -0.6602 6.0636 25 7 3.2531 -1.6227 5.9490 26 14 1.9283 0.0145 7.7504 27 1 0.9071 1.0831 7.6083 28 1 1.3857 -1.0788 8.5962 29 1 3.1467 0.5752 8.3879 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6994 -0.1959 -2.1388 34 1 3.1312 -0.7438 -1.2349 35 1 0.4145 -2.1362 -1.2541 36 1 1.8499 -2.6629 -2.1668 37 1 1.5572 -3.8918 0.0141 38 1 3.0991 -3.0058 -0.0874 39 1 -1.2635 -4.0036 2.9766 40 1 -1.6914 -6.4233 2.9238 41 1 2.6299 -4.6680 1.3029 42 1 0.3558 -0.3139 2.5272 43 1 1.5672 0.9890 2.4678 44 1 2.7248 -1.3466 3.6093 45 1 3.6840 -1.9813 6.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482494452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:54 Heat of formation + Delta-G solvation = -58.544828 kcal Electronic energy + Delta-G solvation = -31010.898998 eV Core-core repulsion = 26665.788913 eV Total energy + Delta-G solvation = -4345.110084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.59878 -49.67392 -41.96449 -39.79148 -38.35966 -36.32656 -34.75344 -33.67486 -32.06410 -31.84224 -31.48206 -28.43448 -27.29647 -26.05111 -24.76857 -24.37462 -24.07880 -22.53715 -21.36181 -19.84726 -19.27390 -18.80418 -18.38335 -18.09946 -17.45760 -17.23163 -16.79451 -16.71824 -16.15142 -16.04228 -15.81656 -15.65066 -15.35787 -15.24166 -15.17370 -15.05935 -14.70253 -14.17525 -14.05506 -13.88136 -13.68993 -13.53620 -13.29037 -13.14670 -12.91921 -12.83810 -12.58781 -12.52239 -12.32957 -12.05825 -11.98576 -11.80679 -11.60009 -11.26270 -11.19089 -10.88399 -10.18921 -10.02088 -9.77879 -9.43234 -8.62143 -7.83430 -5.01992 -0.47607 -0.13527 1.44575 1.46115 1.55548 1.75018 2.05404 2.39255 2.62393 2.66277 3.17091 3.37637 3.49837 3.52503 3.77298 3.81940 3.89680 3.92879 3.98885 4.14765 4.28462 4.40192 4.45387 4.52851 4.56856 4.57801 4.64255 4.72262 4.84551 4.85368 4.87195 4.92761 4.98251 5.04166 5.08536 5.16475 5.28427 5.32247 5.33888 5.43236 5.55003 5.55653 5.59943 5.85374 6.38182 6.58537 7.42343 7.47002 8.24580 8.46619 9.41341 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.005097 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.139621 B = 5491.881394 C = 7798.959196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.130 4.130 6 C 0.090 3.910 7 N -0.600 5.600 8 C 0.519 3.481 9 O -0.491 6.491 10 C -0.105 4.105 11 C -0.054 4.054 12 C -0.114 4.114 13 C 0.076 3.924 14 F -0.130 7.130 15 C 0.056 3.944 16 F -0.131 7.131 17 C -0.096 4.096 18 C 0.152 3.848 19 H 0.061 0.939 20 C 0.161 3.839 21 N -0.707 5.707 22 C -0.205 4.205 23 H 0.063 0.937 24 C -0.084 4.084 25 N -0.973 5.973 26 Si 0.963 3.037 27 H -0.271 1.271 28 H -0.300 1.300 29 H -0.294 1.294 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.038 0.962 43 H 0.009 0.991 44 H 0.366 0.634 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -6.789 -20.097 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.145 4.145 5 C -0.168 4.168 6 C -0.031 4.031 7 N -0.335 5.335 8 C 0.306 3.694 9 O -0.364 6.364 10 C -0.109 4.109 11 C -0.073 4.073 12 C -0.133 4.133 13 C 0.056 3.944 14 F -0.108 7.108 15 C 0.036 3.964 16 F -0.110 7.110 17 C -0.115 4.115 18 C 0.049 3.951 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.347 5.347 22 C -0.338 4.338 23 H 0.081 0.919 24 C -0.275 4.275 25 N -0.626 5.626 26 Si 0.795 3.205 27 H -0.195 1.195 28 H -0.228 1.228 29 H -0.222 1.222 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.199 0.801 41 H 0.179 0.821 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.198 0.802 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.748 -6.353 -19.501 21.591 hybrid contribution 0.504 -0.444 1.436 1.586 sum -6.244 -6.797 -18.064 20.286 Atomic orbital electron populations 1.21796 0.94751 1.01621 1.01421 1.21452 0.96706 0.99563 0.93642 0.89707 1.21527 1.00793 0.95491 0.96700 1.21954 1.01539 0.95969 0.97318 1.22315 1.00979 0.95910 0.83910 1.47764 1.56579 1.10853 1.18351 1.18477 0.81103 0.87069 0.82783 1.91189 1.48410 1.62747 1.34083 1.20055 0.95834 0.93687 1.01326 1.21259 0.96069 0.95203 0.94760 1.21247 1.00322 0.91736 0.99946 1.17981 0.94391 0.78459 1.03610 1.91527 1.94526 1.30399 1.94351 1.17522 0.86919 0.88064 1.03917 1.91525 1.63262 1.69837 1.86337 1.21381 1.01084 0.90042 0.99003 1.21404 0.97943 0.80251 0.95542 0.92101 1.21041 0.96938 0.93508 0.85006 1.42357 1.47526 1.43266 1.01572 1.19482 1.15923 1.12605 0.85758 0.91948 1.25330 1.00990 1.00488 1.00716 1.69817 1.32922 1.31911 1.27998 0.85179 0.77051 0.77230 0.81084 1.19519 1.22764 1.22206 0.94400 0.90914 0.93035 0.89691 0.91344 0.91334 0.88333 0.88646 0.90473 0.83338 0.80148 0.82096 0.94428 0.97381 0.80238 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.22 71.98 0.59 -2.55 16 2 C -0.09 -2.11 2.80 -10.71 -0.03 -2.14 16 3 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.53 16 5 C -0.13 -1.92 5.74 30.67 0.18 -1.74 16 6 C 0.09 1.77 4.82 86.36 0.42 2.19 16 7 N -0.60 -17.40 2.41 -798.54 -1.93 -19.33 16 8 C 0.52 18.54 6.73 86.76 0.58 19.12 16 9 O -0.49 -22.88 10.72 -3.93 -0.04 -22.93 16 10 C -0.11 -3.09 5.19 -20.09 -0.10 -3.20 16 11 C -0.05 -1.38 9.62 22.52 0.22 -1.17 16 12 C -0.11 -2.38 10.01 22.27 0.22 -2.16 16 13 C 0.08 1.79 7.31 22.50 0.16 1.95 16 14 F -0.13 -3.10 17.17 44.97 0.77 -2.33 16 15 C 0.06 1.40 7.30 22.37 0.16 1.56 16 16 F -0.13 -3.36 17.17 44.97 0.77 -2.59 16 17 C -0.10 -2.45 7.34 22.56 0.17 -2.28 16 18 C 0.15 4.78 2.63 44.97 0.12 4.90 16 19 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 20 C 0.16 6.81 4.05 86.38 0.35 7.16 16 21 N -0.71 -37.87 3.25 -343.44 -1.12 -38.98 16 22 C -0.20 -12.21 9.71 84.04 0.82 -11.40 16 23 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 24 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 25 N -0.97 -62.81 13.06 21.65 0.28 -62.53 16 26 Si 0.96 49.46 29.55 68.60 2.03 51.49 16 27 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 28 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 29 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 30 H 0.04 1.03 6.56 -2.38 -0.02 1.01 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.21 5.97 -2.39 -0.01 1.20 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.08 6.34 -2.38 -0.02 1.07 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.73 4.67 -2.39 -0.01 1.72 16 38 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.15 3.79 8.04 -2.91 -0.02 3.76 16 40 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.16 3.73 6.37 -2.91 -0.02 3.72 16 42 H 0.04 1.71 5.04 -2.39 -0.01 1.70 16 43 H 0.01 0.36 8.13 -2.39 -0.02 0.34 16 44 H 0.37 21.05 7.10 -92.71 -0.66 20.39 16 45 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.13 356.40 5.63 -69.49 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.38 Total: 23.67 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 4.48 Total: 4.03 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -2.76 Total: -120.84 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.93 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.54 Total: -4.92 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Total: -75.13 5.63 -69.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.947 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds