Wall clock time and date at job start Tue Mar 31 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49211 * 2 1 4 4 C 1.53043 * 109.49986 * 120.06232 * 2 1 3 5 5 C 1.53035 * 109.53438 * 58.62028 * 4 2 1 6 6 C 1.53198 * 109.31362 * 61.36685 * 5 4 2 7 7 N 1.46923 * 108.89133 * 305.28846 * 6 5 4 8 8 C 1.34769 * 120.63137 * 233.67221 * 7 6 5 9 9 O 1.21569 * 120.00169 * 181.21801 * 8 7 6 10 10 C 1.47727 * 120.00302 * 1.22477 * 8 7 6 11 11 C 1.39652 * 120.10278 * 326.31560 * 10 8 7 12 12 C 1.37857 * 119.92135 * 179.72266 * 11 10 8 13 13 C 1.38605 * 120.14756 * 0.57893 * 12 11 10 14 14 F 1.35102 * 119.89245 * 179.72145 * 13 12 11 15 15 C 1.38839 * 120.22036 * 359.69615 * 13 12 11 16 16 F 1.35099 * 119.96463 * 180.02562 * 15 13 12 17 17 C 1.38058 * 120.07338 * 0.02562 * 15 13 12 18 18 C 1.47212 * 118.55256 * 53.54104 * 7 6 5 19 19 H 1.09001 * 109.67736 * 66.36984 * 18 7 6 20 20 C 1.53003 * 109.53154 * 186.67187 * 18 7 6 21 21 N 1.46499 * 109.46925 * 287.95230 * 20 18 7 22 22 C 1.36941 * 119.99787 * 185.36436 * 21 20 18 23 23 H 1.08001 * 120.00040 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00154 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46844 * 90.00198 * 26 24 22 28 28 H 1.48502 * 109.47004 * 209.99804 * 26 24 22 29 29 H 1.48498 * 109.47315 * 329.99818 * 26 24 22 30 30 H 1.09004 * 109.47251 * 299.93326 * 1 2 3 31 31 H 1.08994 * 109.47600 * 59.93785 * 1 2 3 32 32 H 1.09007 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.45890 * 298.60113 * 4 2 1 34 34 H 1.09001 * 109.44814 * 178.63536 * 4 2 1 35 35 H 1.09001 * 109.50466 * 301.41125 * 5 4 2 36 36 H 1.09003 * 109.49911 * 181.31661 * 5 4 2 37 37 H 1.08996 * 109.58451 * 65.14948 * 6 5 4 38 38 H 1.09003 * 109.58691 * 185.43050 * 6 5 4 39 39 H 1.07999 * 120.04389 * 0.02562 * 11 10 8 40 40 H 1.07995 * 119.92732 * 180.27756 * 12 11 10 41 41 H 1.07991 * 120.07698 * 180.02562 * 17 15 13 42 42 H 1.09003 * 109.47151 * 47.95232 * 20 18 7 43 43 H 1.08999 * 109.47044 * 167.95089 * 20 18 7 44 44 H 0.96995 * 120.00572 * 5.36482 * 21 20 18 45 45 H 0.96996 * 119.99671 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7227 1.2486 5 6 1.5037 -2.1556 1.2662 6 6 2.0155 -2.9037 0.0311 7 7 1.6527 -2.1412 -1.1712 8 6 0.9759 -2.7278 -2.1782 9 8 0.7010 -2.0921 -3.1773 10 6 0.5681 -4.1434 -2.0680 11 6 1.3765 -5.0541 -1.3843 12 6 0.9894 -6.3730 -1.2788 13 6 -0.1943 -6.7997 -1.8601 14 9 -0.5659 -8.0946 -1.7583 15 6 -0.9998 -5.9007 -2.5461 16 9 -2.1528 -6.3220 -3.1102 17 6 -0.6238 -4.5765 -2.6524 18 6 2.0420 -0.7236 -1.2494 19 1 3.1279 -0.6434 -1.2989 20 6 1.4235 -0.0914 -2.4979 21 7 2.1106 -0.5930 -3.6906 22 6 1.8021 -0.0834 -4.9236 23 1 1.0520 0.6881 -5.0169 24 6 2.4527 -0.5590 -6.0539 25 7 3.3665 -1.4995 -5.9403 26 14 2.0314 0.1358 -7.7359 27 1 2.9081 1.2990 -8.0247 28 1 2.2397 -0.9098 -8.7696 29 1 0.6115 0.5703 -7.7505 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6983 -0.1955 2.1389 34 1 3.1306 -0.7434 1.2356 35 1 0.4140 -2.1359 1.2540 36 1 1.8488 -2.6624 2.1674 37 1 3.0994 -3.0034 0.0875 38 1 1.5593 -3.8928 -0.0120 39 1 2.3014 -4.7245 -0.9345 40 1 1.6123 -7.0764 -0.7463 41 1 -1.2505 -3.8771 -3.1856 42 1 0.3663 -0.3515 -2.5512 43 1 1.5289 0.9923 -2.4466 44 1 2.7840 -1.2861 -3.6070 45 1 3.8208 -1.8321 -6.7301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482494453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:58 Heat of formation + Delta-G solvation = -27.247698 kcal Electronic energy + Delta-G solvation = -30920.649067 eV Core-core repulsion = 26576.896128 eV Total energy + Delta-G solvation = -4343.752939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.54638 -48.61586 -40.79500 -38.71834 -37.16289 -34.60754 -33.51067 -32.13166 -31.13988 -30.47113 -30.08527 -27.07518 -26.23288 -24.54606 -23.72255 -23.22024 -22.54066 -21.29913 -20.20352 -18.71089 -17.85967 -17.76355 -17.15757 -16.72838 -16.39297 -15.88348 -15.54426 -15.24686 -15.03332 -15.00738 -14.52465 -14.38658 -14.28583 -14.05818 -13.89839 -13.57276 -13.16077 -13.06770 -12.79008 -12.60497 -12.45949 -12.36716 -12.09316 -12.03344 -11.59598 -11.50838 -11.15584 -11.02663 -10.81839 -10.70546 -10.64896 -10.32859 -10.20837 -9.87296 -9.53672 -9.20584 -8.83086 -8.73645 -8.45553 -8.11895 -6.54960 -5.58589 -2.76354 0.56239 0.87143 2.87539 3.18705 3.52974 3.58557 3.60388 3.66670 3.68936 4.22008 4.44704 4.51343 4.68720 4.73131 4.77589 4.87585 4.90634 4.98581 5.06390 5.26065 5.37813 5.46311 5.54270 5.64581 5.68220 5.71964 5.72965 5.75030 5.76932 5.81659 5.88550 5.91683 5.98169 6.07965 6.10938 6.16452 6.27321 6.46042 6.51231 6.56337 6.64505 6.87750 7.22170 7.82528 7.84797 8.59748 8.77938 9.71225 10.31136 10.65183 11.65137 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.005029 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.199131 B = 5566.127159 C = 7957.860799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.080 3.920 7 N -0.604 5.604 8 C 0.510 3.490 9 O -0.428 6.428 10 C -0.087 4.087 11 C -0.090 4.090 12 C -0.133 4.133 13 C 0.073 3.927 14 F -0.130 7.130 15 C 0.064 3.936 16 F -0.128 7.128 17 C -0.077 4.077 18 C 0.148 3.852 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.693 5.693 22 C -0.208 4.208 23 H 0.065 0.935 24 C -0.021 4.021 25 N -0.936 5.936 26 Si 0.902 3.098 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.042 0.958 43 H 0.017 0.983 44 H 0.380 0.620 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -6.862 19.126 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.043 4.043 7 N -0.341 5.341 8 C 0.295 3.705 9 O -0.296 6.296 10 C -0.091 4.091 11 C -0.108 4.108 12 C -0.151 4.151 13 C 0.053 3.947 14 F -0.109 7.109 15 C 0.044 3.956 16 F -0.107 7.107 17 C -0.096 4.096 18 C 0.046 3.954 19 H 0.089 0.911 20 C 0.032 3.968 21 N -0.336 5.336 22 C -0.340 4.340 23 H 0.083 0.917 24 C -0.215 4.215 25 N -0.586 5.586 26 Si 0.734 3.266 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.210 1.210 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.175 0.825 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.060 0.940 43 H 0.034 0.966 44 H 0.213 0.787 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.452 -6.443 18.351 19.952 hybrid contribution -0.166 -0.414 -1.008 1.102 sum -4.618 -6.857 17.343 19.213 Atomic orbital electron populations 1.21856 0.94916 1.01988 1.01442 1.21467 0.96679 0.99436 0.94379 0.90199 1.21538 1.00462 0.95489 0.97592 1.21972 1.01679 0.96304 0.97513 1.22480 1.00192 0.96692 0.84895 1.47700 1.57838 1.10967 1.17631 1.18028 0.82569 0.85894 0.84029 1.91307 1.49132 1.61529 1.27586 1.20154 0.94865 0.95731 0.98371 1.21684 1.00513 0.91727 0.96923 1.20996 0.95209 0.97133 1.01795 1.17845 0.95944 0.78631 1.02302 1.91521 1.91367 1.33508 1.94467 1.17506 0.84960 0.92923 1.00244 1.91535 1.45851 1.90373 1.82902 1.21127 0.97021 0.93391 0.98081 1.21568 0.98885 0.79218 0.95776 0.91116 1.20950 0.96916 0.94148 0.84809 1.42270 1.44832 1.45141 1.01341 1.19161 1.15821 1.14337 0.84637 0.91676 1.24617 0.99945 0.99590 0.97394 1.69653 1.29208 1.31699 1.28024 0.86243 0.77627 0.77755 0.84981 1.22127 1.22067 1.21032 0.93388 0.92000 0.92484 0.92018 0.91883 0.91177 0.91262 0.91502 0.87957 0.82468 0.83362 0.82745 0.94030 0.96551 0.78651 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.22 37.16 0.31 -1.42 16 2 C -0.10 -1.19 2.78 -90.50 -0.25 -1.44 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.05 5.43 -26.69 -0.14 -1.20 16 5 C -0.14 -1.17 5.74 -26.61 -0.15 -1.32 16 6 C 0.08 0.80 4.88 -3.71 -0.02 0.78 16 7 N -0.60 -8.67 2.43 -166.15 -0.40 -9.07 16 8 C 0.51 8.88 7.02 -12.39 -0.09 8.79 16 9 O -0.43 -9.70 10.54 5.31 0.06 -9.65 16 10 C -0.09 -1.26 5.49 -104.97 -0.58 -1.84 16 11 C -0.09 -1.00 7.40 -39.19 -0.29 -1.29 16 12 C -0.13 -1.34 10.01 -39.59 -0.40 -1.74 16 13 C 0.07 0.91 7.31 -39.22 -0.29 0.62 16 14 F -0.13 -1.66 17.17 2.25 0.04 -1.62 16 15 C 0.06 0.89 7.30 -39.43 -0.29 0.60 16 16 F -0.13 -1.87 17.18 2.25 0.04 -1.84 16 17 C -0.08 -1.12 9.58 -39.13 -0.37 -1.49 16 18 C 0.15 2.31 2.62 -67.44 -0.18 2.13 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.25 3.97 -4.04 -0.02 3.23 16 21 N -0.69 -17.91 3.21 -59.90 -0.19 -18.10 16 22 C -0.21 -6.02 9.74 -15.06 -0.15 -6.17 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 25 N -0.94 -29.29 13.06 55.49 0.72 -28.56 16 26 Si 0.90 23.51 29.55 -169.99 -5.02 18.49 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.84 6.63 -51.93 -0.34 0.50 16 32 H 0.06 0.71 5.98 -51.93 -0.31 0.40 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.10 0.89 3.66 -52.08 -0.19 0.70 16 39 H 0.16 1.42 5.46 -52.49 -0.29 1.14 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.15 2.34 7.97 -52.49 -0.42 1.92 16 42 H 0.04 0.91 5.27 -51.93 -0.27 0.64 16 43 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 44 H 0.38 10.47 7.19 -40.82 -0.29 10.17 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -33.79 355.23 -8.20 -41.99 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.79 Total: 5.47 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.00 Total: -2.47 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.13 Total: -55.73 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.79 -8.20 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.744 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds