Wall clock time and date at job start Tue Mar 31 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49211 * 2 1 4 4 C 1.53043 * 109.49986 * 120.06232 * 2 1 3 5 5 C 1.53035 * 109.53438 * 58.62028 * 4 2 1 6 6 C 1.53198 * 109.31362 * 61.36685 * 5 4 2 7 7 N 1.46923 * 108.89133 * 305.28846 * 6 5 4 8 8 C 1.34769 * 120.63137 * 233.67221 * 7 6 5 9 9 O 1.21569 * 120.00169 * 181.21801 * 8 7 6 10 10 C 1.47727 * 120.00302 * 1.22477 * 8 7 6 11 11 C 1.39652 * 120.10278 * 326.31560 * 10 8 7 12 12 C 1.37857 * 119.92135 * 179.72266 * 11 10 8 13 13 C 1.38605 * 120.14756 * 0.57893 * 12 11 10 14 14 F 1.35102 * 119.89245 * 179.72145 * 13 12 11 15 15 C 1.38839 * 120.22036 * 359.69615 * 13 12 11 16 16 F 1.35099 * 119.96463 * 180.02562 * 15 13 12 17 17 C 1.38058 * 120.07338 * 0.02562 * 15 13 12 18 18 C 1.47212 * 118.55256 * 53.54104 * 7 6 5 19 19 H 1.09001 * 109.67736 * 66.36984 * 18 7 6 20 20 C 1.53003 * 109.53154 * 186.67187 * 18 7 6 21 21 N 1.46499 * 109.46925 * 287.95230 * 20 18 7 22 22 C 1.36941 * 119.99787 * 185.36436 * 21 20 18 23 23 H 1.08001 * 120.00040 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00154 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46844 * 90.00198 * 26 24 22 28 28 H 1.48502 * 109.47004 * 209.99804 * 26 24 22 29 29 H 1.48498 * 109.47315 * 329.99818 * 26 24 22 30 30 H 1.09004 * 109.47251 * 299.93326 * 1 2 3 31 31 H 1.08994 * 109.47600 * 59.93785 * 1 2 3 32 32 H 1.09007 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.45890 * 298.60113 * 4 2 1 34 34 H 1.09001 * 109.44814 * 178.63536 * 4 2 1 35 35 H 1.09001 * 109.50466 * 301.41125 * 5 4 2 36 36 H 1.09003 * 109.49911 * 181.31661 * 5 4 2 37 37 H 1.08996 * 109.58451 * 65.14948 * 6 5 4 38 38 H 1.09003 * 109.58691 * 185.43050 * 6 5 4 39 39 H 1.07999 * 120.04389 * 0.02562 * 11 10 8 40 40 H 1.07995 * 119.92732 * 180.27756 * 12 11 10 41 41 H 1.07991 * 120.07698 * 180.02562 * 17 15 13 42 42 H 1.09003 * 109.47151 * 47.95232 * 20 18 7 43 43 H 1.08999 * 109.47044 * 167.95089 * 20 18 7 44 44 H 0.96995 * 120.00572 * 5.36482 * 21 20 18 45 45 H 0.96996 * 119.99671 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7227 1.2486 5 6 1.5037 -2.1556 1.2662 6 6 2.0155 -2.9037 0.0311 7 7 1.6527 -2.1412 -1.1712 8 6 0.9759 -2.7278 -2.1782 9 8 0.7010 -2.0921 -3.1773 10 6 0.5681 -4.1434 -2.0680 11 6 1.3765 -5.0541 -1.3843 12 6 0.9894 -6.3730 -1.2788 13 6 -0.1943 -6.7997 -1.8601 14 9 -0.5659 -8.0946 -1.7583 15 6 -0.9998 -5.9007 -2.5461 16 9 -2.1528 -6.3220 -3.1102 17 6 -0.6238 -4.5765 -2.6524 18 6 2.0420 -0.7236 -1.2494 19 1 3.1279 -0.6434 -1.2989 20 6 1.4235 -0.0914 -2.4979 21 7 2.1106 -0.5930 -3.6906 22 6 1.8021 -0.0834 -4.9236 23 1 1.0520 0.6881 -5.0169 24 6 2.4527 -0.5590 -6.0539 25 7 3.3665 -1.4995 -5.9403 26 14 2.0314 0.1358 -7.7359 27 1 2.9081 1.2990 -8.0247 28 1 2.2397 -0.9098 -8.7696 29 1 0.6115 0.5703 -7.7505 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6983 -0.1955 2.1389 34 1 3.1306 -0.7434 1.2356 35 1 0.4140 -2.1359 1.2540 36 1 1.8488 -2.6624 2.1674 37 1 3.0994 -3.0034 0.0875 38 1 1.5593 -3.8928 -0.0120 39 1 2.3014 -4.7245 -0.9345 40 1 1.6123 -7.0764 -0.7463 41 1 -1.2505 -3.8771 -3.1856 42 1 0.3663 -0.3515 -2.5512 43 1 1.5289 0.9923 -2.4466 44 1 2.7840 -1.2861 -3.6070 45 1 3.8208 -1.8321 -6.7301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482494453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:57 Heat of formation + Delta-G solvation = -47.640033 kcal Electronic energy + Delta-G solvation = -30921.533345 eV Core-core repulsion = 26576.896128 eV Total energy + Delta-G solvation = -4344.637217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.61462 -49.69177 -41.99122 -39.78049 -38.39781 -36.32799 -34.76198 -33.66134 -32.20613 -31.76353 -31.49554 -28.43254 -27.31648 -26.07030 -24.77015 -24.57033 -23.85528 -22.57786 -21.34256 -19.82925 -19.26723 -18.88258 -18.41965 -18.20928 -17.46051 -17.02751 -16.79087 -16.68796 -16.24710 -16.10821 -15.86228 -15.55721 -15.44322 -15.19623 -15.11383 -15.05615 -14.74811 -14.17181 -13.98223 -13.93579 -13.71570 -13.54627 -13.24191 -13.16197 -12.92697 -12.80361 -12.57898 -12.55660 -12.26125 -12.05676 -11.97240 -11.73221 -11.57921 -11.23270 -11.13113 -10.84711 -10.22677 -10.08140 -9.71223 -9.40012 -8.62013 -7.83741 -5.01212 -0.49610 -0.13988 1.42896 1.45472 1.53185 1.75057 2.00843 2.47741 2.61792 2.64700 3.19212 3.39975 3.48917 3.50747 3.77668 3.82937 3.89693 3.93163 3.98508 4.17783 4.31428 4.40767 4.46702 4.55475 4.59329 4.61903 4.70192 4.76005 4.79101 4.84700 4.86658 4.94249 4.96509 5.04046 5.06911 5.18370 5.28149 5.32409 5.36138 5.40800 5.53420 5.55656 5.61563 5.85215 6.38293 6.60962 7.43468 7.48903 8.26334 8.48543 9.41050 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.005029 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.199131 B = 5566.127159 C = 7957.860799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.070 3.930 7 N -0.596 5.596 8 C 0.513 3.487 9 O -0.499 6.499 10 C -0.106 4.106 11 C -0.073 4.073 12 C -0.108 4.108 13 C 0.078 3.922 14 F -0.129 7.129 15 C 0.049 3.951 16 F -0.138 7.138 17 C -0.090 4.090 18 C 0.153 3.847 19 H 0.065 0.935 20 C 0.164 3.836 21 N -0.703 5.703 22 C -0.208 4.208 23 H 0.059 0.941 24 C -0.083 4.083 25 N -0.972 5.972 26 Si 0.962 3.038 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.280 1.280 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.133 0.867 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.368 0.632 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -8.327 22.708 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.051 4.051 7 N -0.332 5.332 8 C 0.299 3.701 9 O -0.372 6.372 10 C -0.109 4.109 11 C -0.091 4.091 12 C -0.126 4.126 13 C 0.058 3.942 14 F -0.108 7.108 15 C 0.029 3.971 16 F -0.117 7.117 17 C -0.109 4.109 18 C 0.050 3.950 19 H 0.083 0.917 20 C 0.037 3.963 21 N -0.343 5.343 22 C -0.341 4.341 23 H 0.077 0.923 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.205 1.205 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.205 0.795 40 H 0.212 0.788 41 H 0.151 0.849 42 H 0.043 0.957 43 H 0.027 0.973 44 H 0.200 0.800 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.485 -7.906 22.029 23.662 hybrid contribution -0.575 -0.057 -1.937 2.022 sum -4.060 -7.963 20.091 21.990 Atomic orbital electron populations 1.21804 0.95086 1.01545 1.01282 1.21454 0.96409 0.99614 0.93903 0.89840 1.21534 1.00946 0.95770 0.96317 1.21972 1.01311 0.95833 0.97814 1.22897 1.01705 0.97098 0.83405 1.47839 1.56261 1.10743 1.18345 1.18580 0.81027 0.86862 0.83593 1.91283 1.52553 1.63202 1.30153 1.20004 0.95689 0.94847 1.00393 1.21970 1.00519 0.91444 0.95200 1.21424 0.94029 0.97117 1.00019 1.18039 0.96217 0.78283 1.01673 1.91532 1.91468 1.33388 1.94374 1.17607 0.85262 0.92985 1.01285 1.91504 1.46522 1.90377 1.83271 1.20985 0.97528 0.93688 0.98734 1.21424 0.98108 0.80303 0.95163 0.91720 1.20948 0.96001 0.93826 0.85494 1.42295 1.45092 1.45043 1.01881 1.19449 1.14731 1.13561 0.86361 0.92267 1.25306 1.00763 1.00727 1.00621 1.69802 1.30860 1.33630 1.28219 0.85273 0.77547 0.77007 0.80851 1.21268 1.22580 1.20529 0.90908 0.94763 0.93068 0.89934 0.91049 0.91793 0.87801 0.89421 0.86344 0.79515 0.78777 0.84903 0.95708 0.97253 0.80026 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.22 71.98 0.59 -2.64 16 2 C -0.09 -2.09 2.78 -10.72 -0.03 -2.12 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.11 -1.57 5.43 30.62 0.17 -1.41 16 5 C -0.13 -1.65 5.74 30.67 0.18 -1.47 16 6 C 0.07 1.12 4.88 86.36 0.42 1.54 16 7 N -0.60 -16.60 2.43 -797.87 -1.94 -18.54 16 8 C 0.51 18.31 7.02 86.75 0.61 18.92 16 9 O -0.50 -24.14 10.54 -3.93 -0.04 -24.19 16 10 C -0.11 -3.02 5.49 -20.09 -0.11 -3.13 16 11 C -0.07 -1.38 7.40 22.52 0.17 -1.21 16 12 C -0.11 -1.70 10.01 22.27 0.22 -1.48 16 13 C 0.08 1.74 7.31 22.50 0.16 1.91 16 14 F -0.13 -2.94 17.17 44.97 0.77 -2.17 16 15 C 0.05 1.34 7.30 22.37 0.16 1.51 16 16 F -0.14 -4.13 17.18 44.97 0.77 -3.36 16 17 C -0.09 -2.72 9.58 22.56 0.22 -2.51 16 18 C 0.15 4.76 2.62 44.92 0.12 4.88 16 19 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 20 C 0.16 7.04 3.97 86.38 0.34 7.38 16 21 N -0.70 -38.18 3.21 -343.44 -1.10 -39.29 16 22 C -0.21 -12.64 9.74 84.03 0.82 -11.83 16 23 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 24 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 25 N -0.97 -63.20 13.06 21.65 0.28 -62.91 16 26 Si 0.96 50.20 29.55 68.60 2.03 52.22 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 29 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.03 0.96 6.63 -2.39 -0.02 0.95 16 32 H 0.05 1.23 5.98 -2.38 -0.01 1.22 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.93 6.34 -2.39 -0.02 0.92 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.15 8.13 -2.39 -0.02 1.14 16 38 H 0.12 1.53 3.66 -2.53 -0.01 1.52 16 39 H 0.19 2.44 5.46 -2.91 -0.02 2.42 16 40 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.13 4.51 7.97 -2.92 -0.02 4.49 16 42 H 0.03 1.18 5.27 -2.39 -0.01 1.17 16 43 H 0.01 0.42 8.10 -2.39 -0.02 0.40 16 44 H 0.37 21.28 7.19 -92.71 -0.67 20.61 16 45 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -80.10 355.23 5.65 -74.45 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.38 Total: 20.13 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.50 Total: 3.66 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -2.76 Total: -120.74 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.54 Total: -5.53 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.22 kcal Total: -80.10 5.65 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.807 kcal (2) G-P(sol) polarization free energy of solvation -80.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds