Wall clock time and date at job start Tue Mar 31 2020 21:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52663 * 2 1 4 4 C 1.53047 * 109.49928 * 120.07774 * 2 1 3 5 5 C 1.53040 * 109.53695 * 181.31704 * 4 2 1 6 6 C 1.53622 * 109.24406 * 298.51123 * 5 4 2 7 7 N 1.46923 * 108.54075 * 54.86181 * 6 5 4 8 8 C 1.34772 * 120.63204 * 126.36804 * 7 6 5 9 9 O 1.21570 * 120.00264 * 186.18688 * 8 7 6 10 10 C 1.47727 * 119.99951 * 6.18931 * 8 7 6 11 11 C 1.39655 * 120.10522 * 217.70334 * 10 8 7 12 12 C 1.37857 * 119.92147 * 180.25478 * 11 10 8 13 13 C 1.38607 * 120.14737 * 359.44403 * 12 11 10 14 14 F 1.35105 * 119.89043 * 180.26010 * 13 12 11 15 15 C 1.38835 * 120.21856 * 0.55299 * 13 12 11 16 16 F 1.35105 * 119.96108 * 179.74608 * 15 13 12 17 17 C 1.38056 * 120.07406 * 359.72804 * 15 13 12 18 18 C 1.46929 * 118.73942 * 306.08668 * 7 6 5 19 19 H 1.08992 * 109.58902 * 294.08004 * 18 7 6 20 20 C 1.52993 * 109.58705 * 173.64728 * 18 7 6 21 21 N 1.46501 * 109.46820 * 69.35136 * 20 18 7 22 22 C 1.36944 * 119.99661 * 175.29022 * 21 20 18 23 23 H 1.07995 * 120.00578 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99386 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00235 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99644 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47403 * 59.99620 * 26 24 22 28 28 H 1.48498 * 109.47097 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47204 * 299.99844 * 26 24 22 30 30 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47232 * 300.08365 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.08570 * 1 2 3 33 33 H 1.08995 * 109.46021 * 301.34131 * 4 2 1 34 34 H 1.08999 * 109.45465 * 61.29937 * 4 2 1 35 35 H 1.08994 * 109.49749 * 58.59520 * 5 4 2 36 36 H 1.09002 * 109.49082 * 178.68334 * 5 4 2 37 37 H 1.09002 * 109.73981 * 295.12282 * 6 5 4 38 38 H 1.08999 * 109.66175 * 174.55136 * 6 5 4 39 39 H 1.07990 * 120.04153 * 359.97438 * 11 10 8 40 40 H 1.08000 * 119.92380 * 179.70049 * 12 11 10 41 41 H 1.08005 * 120.07379 * 179.97438 * 17 15 13 42 42 H 1.09008 * 109.47308 * 189.34390 * 20 18 7 43 43 H 1.08999 * 109.47928 * 309.34840 * 20 18 7 44 44 H 0.96991 * 120.00238 * 355.28653 * 21 20 18 45 45 H 0.96993 * 119.99670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6949 1.2660 6 6 4.1051 -1.4317 0.0284 7 7 3.5047 -0.8290 -1.1695 8 6 4.2812 -0.3863 -2.1782 9 8 3.7824 0.2110 -3.1121 10 6 5.7384 -0.6270 -2.1489 11 6 6.6194 0.3510 -2.6155 12 6 7.9783 0.1203 -2.5913 13 6 8.4727 -1.0754 -2.0943 14 9 9.8057 -1.2939 -2.0682 15 6 7.6023 -2.0518 -1.6288 16 9 8.0896 -3.2174 -1.1502 17 6 6.2395 -1.8327 -1.6541 18 6 2.0414 -0.7238 -1.2496 19 1 1.6053 -1.7215 -1.2980 20 6 1.6518 0.0705 -2.4978 21 7 1.9570 -0.7187 -3.6937 22 6 1.6042 -0.2505 -4.9314 23 1 1.1015 0.7006 -5.0259 24 6 1.8939 -0.9982 -6.0646 25 7 2.5079 -2.1567 -5.9496 26 14 1.4133 -0.3594 -7.7529 27 1 2.0856 0.9415 -7.9998 28 1 1.8317 -1.3368 -8.7895 29 1 -0.0590 -0.1746 -7.8116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6581 -0.2245 2.1389 34 1 1.6967 -1.7572 1.2353 35 1 3.9159 0.3389 1.2542 36 1 3.9334 -1.1896 2.1672 37 1 3.8339 -2.4861 0.0821 38 1 5.1896 -1.3331 -0.0174 39 1 6.2364 1.2850 -2.9990 40 1 8.6594 0.8747 -2.9566 41 1 5.5624 -2.5924 -1.2924 42 1 0.5845 0.2904 -2.4702 43 1 2.2144 1.0037 -2.5250 44 1 2.4089 -1.5727 -3.6090 45 1 2.7106 -2.6788 -6.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482494454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:01 Heat of formation + Delta-G solvation = -42.482094 kcal Electronic energy + Delta-G solvation = -30771.036109 eV Core-core repulsion = 26426.622557 eV Total energy + Delta-G solvation = -4344.413552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.52642 -48.60022 -40.62213 -38.63157 -37.06487 -34.68926 -33.59865 -32.14606 -31.12000 -30.59091 -30.05823 -27.06395 -26.09326 -24.42395 -23.51121 -23.04224 -22.36610 -21.04892 -20.36295 -19.42533 -17.87797 -17.59693 -17.02391 -16.80886 -16.38412 -16.02541 -15.53314 -15.02177 -14.98212 -14.79746 -14.63921 -14.40185 -14.26773 -14.04990 -13.85376 -13.45186 -13.06097 -12.96985 -12.92804 -12.55929 -12.44693 -12.28502 -12.09131 -11.98905 -11.65736 -11.55511 -11.33862 -10.99757 -10.89451 -10.71193 -10.63610 -10.60162 -10.20568 -9.85750 -9.55136 -9.11920 -8.82325 -8.80523 -8.39810 -8.14005 -6.57316 -5.60646 -2.78731 0.62173 0.91406 2.92699 3.24872 3.52026 3.56865 3.57917 3.58543 3.76033 4.24650 4.45507 4.57321 4.69850 4.73866 4.84344 4.86986 4.93902 4.99420 5.05469 5.29149 5.40907 5.53211 5.57862 5.64039 5.68811 5.71169 5.74643 5.76623 5.76852 5.83834 5.89641 5.93948 5.96841 6.09184 6.12506 6.18201 6.29532 6.41368 6.55241 6.58741 6.65292 6.90156 7.23636 7.82528 7.83820 8.57391 8.77867 9.68500 10.27552 10.61501 11.62802 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.005082 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.921912 B = 5508.840328 C = 8079.302611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.098 3.902 7 N -0.610 5.610 8 C 0.513 3.487 9 O -0.429 6.429 10 C -0.086 4.086 11 C -0.052 4.052 12 C -0.129 4.129 13 C 0.072 3.928 14 F -0.130 7.130 15 C 0.061 3.939 16 F -0.129 7.129 17 C -0.104 4.104 18 C 0.149 3.851 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.694 5.694 22 C -0.208 4.208 23 H 0.066 0.934 24 C -0.020 4.020 25 N -0.935 5.935 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.021 0.979 43 H 0.043 0.957 44 H 0.379 0.621 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 2.910 17.574 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.025 4.025 7 N -0.348 5.348 8 C 0.297 3.703 9 O -0.297 6.297 10 C -0.090 4.090 11 C -0.071 4.071 12 C -0.148 4.148 13 C 0.052 3.948 14 F -0.109 7.109 15 C 0.041 3.959 16 F -0.108 7.108 17 C -0.123 4.123 18 C 0.046 3.954 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.337 5.337 22 C -0.340 4.340 23 H 0.084 0.916 24 C -0.215 4.215 25 N -0.585 5.585 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.038 0.962 43 H 0.060 0.940 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.622 3.308 16.873 18.425 hybrid contribution 0.455 -0.484 -0.849 1.078 sum 7.077 2.824 16.024 17.743 Atomic orbital electron populations 1.21843 0.94453 1.02112 1.02008 1.21472 0.96009 1.00019 0.94348 0.90834 1.21580 0.95021 1.00862 0.97618 1.21994 0.96385 1.01274 0.97524 1.22107 0.98707 0.96899 0.84814 1.47694 1.06259 1.62875 1.17931 1.17987 0.85019 0.83918 0.83330 1.91215 1.71127 1.35353 1.31963 1.20158 0.95388 0.94067 0.99339 1.21153 0.91119 0.99672 0.95185 1.21012 0.96560 0.95904 1.01347 1.17833 0.77365 0.95526 1.04082 1.91519 1.29892 1.95030 1.94458 1.17488 0.91987 0.83033 1.03428 1.91529 1.88299 1.45075 1.85900 1.21411 0.92705 0.98614 0.99608 1.21553 0.78392 0.99630 0.95814 0.91231 1.21025 0.96171 0.95281 0.84610 1.42299 1.68874 1.21582 1.00905 1.19118 1.28921 1.01886 0.84114 0.91630 1.24633 1.02154 0.97313 0.97420 1.69639 1.47343 1.13515 1.28040 0.86311 0.77852 0.77602 0.84738 1.21577 1.21953 1.21579 0.92592 0.92884 0.91571 0.91957 0.91835 0.91537 0.91142 0.91641 0.89420 0.83387 0.83342 0.82981 0.96190 0.93956 0.78753 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.98 37.15 0.33 -1.33 16 2 C -0.10 -1.20 2.34 -90.50 -0.21 -1.41 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -1.10 5.17 -26.69 -0.14 -1.24 16 5 C -0.13 -1.24 6.10 -26.39 -0.16 -1.40 16 6 C 0.10 1.08 4.84 -3.49 -0.02 1.07 16 7 N -0.61 -9.18 2.97 -166.11 -0.49 -9.67 16 8 C 0.51 9.15 6.73 -12.39 -0.08 9.07 16 9 O -0.43 -9.71 10.69 5.30 0.06 -9.65 16 10 C -0.09 -1.29 5.20 -104.97 -0.55 -1.83 16 11 C -0.05 -0.70 9.62 -39.19 -0.38 -1.08 16 12 C -0.13 -1.51 10.01 -39.58 -0.40 -1.91 16 13 C 0.07 0.94 7.31 -39.22 -0.29 0.65 16 14 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 15 C 0.06 0.82 7.30 -39.43 -0.29 0.53 16 16 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 17 C -0.10 -1.40 7.34 -39.13 -0.29 -1.69 16 18 C 0.15 2.37 2.39 -67.60 -0.16 2.20 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.20 4.79 -4.04 -0.02 3.18 16 21 N -0.69 -17.88 3.24 -59.91 -0.19 -18.07 16 22 C -0.21 -6.01 9.70 -15.05 -0.15 -6.15 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 25 N -0.94 -29.13 13.06 55.49 0.72 -28.40 16 26 Si 0.90 23.32 29.55 -169.99 -5.02 18.30 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.09 0.91 4.63 -51.93 -0.24 0.67 16 39 H 0.15 1.93 8.03 -52.49 -0.42 1.51 16 40 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.15 1.88 6.32 -52.48 -0.33 1.54 16 42 H 0.02 0.41 6.26 -51.92 -0.32 0.09 16 43 H 0.04 0.94 6.29 -51.93 -0.33 0.62 16 44 H 0.38 10.44 7.08 -40.82 -0.29 10.15 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -33.15 360.94 -8.33 -41.48 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.04 Total: 6.05 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.88 Total: -2.04 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.04 Total: -56.15 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.15 -8.33 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.004 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds