Wall clock time and date at job start Tue Mar 31 2020 21:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52663 * 2 1 4 4 C 1.53047 * 109.49928 * 120.07774 * 2 1 3 5 5 C 1.53040 * 109.53695 * 181.31704 * 4 2 1 6 6 C 1.53622 * 109.24406 * 298.51123 * 5 4 2 7 7 N 1.46923 * 108.54075 * 54.86181 * 6 5 4 8 8 C 1.34772 * 120.63204 * 126.36804 * 7 6 5 9 9 O 1.21570 * 120.00264 * 186.18688 * 8 7 6 10 10 C 1.47727 * 119.99951 * 6.18931 * 8 7 6 11 11 C 1.39655 * 120.10522 * 217.70334 * 10 8 7 12 12 C 1.37857 * 119.92147 * 180.25478 * 11 10 8 13 13 C 1.38607 * 120.14737 * 359.44403 * 12 11 10 14 14 F 1.35105 * 119.89043 * 180.26010 * 13 12 11 15 15 C 1.38835 * 120.21856 * 0.55299 * 13 12 11 16 16 F 1.35105 * 119.96108 * 179.74608 * 15 13 12 17 17 C 1.38056 * 120.07406 * 359.72804 * 15 13 12 18 18 C 1.46929 * 118.73942 * 306.08668 * 7 6 5 19 19 H 1.08992 * 109.58902 * 294.08004 * 18 7 6 20 20 C 1.52993 * 109.58705 * 173.64728 * 18 7 6 21 21 N 1.46501 * 109.46820 * 69.35136 * 20 18 7 22 22 C 1.36944 * 119.99661 * 175.29022 * 21 20 18 23 23 H 1.07995 * 120.00578 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99386 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00235 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99644 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47403 * 59.99620 * 26 24 22 28 28 H 1.48498 * 109.47097 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47204 * 299.99844 * 26 24 22 30 30 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47232 * 300.08365 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.08570 * 1 2 3 33 33 H 1.08995 * 109.46021 * 301.34131 * 4 2 1 34 34 H 1.08999 * 109.45465 * 61.29937 * 4 2 1 35 35 H 1.08994 * 109.49749 * 58.59520 * 5 4 2 36 36 H 1.09002 * 109.49082 * 178.68334 * 5 4 2 37 37 H 1.09002 * 109.73981 * 295.12282 * 6 5 4 38 38 H 1.08999 * 109.66175 * 174.55136 * 6 5 4 39 39 H 1.07990 * 120.04153 * 359.97438 * 11 10 8 40 40 H 1.08000 * 119.92380 * 179.70049 * 12 11 10 41 41 H 1.08005 * 120.07379 * 179.97438 * 17 15 13 42 42 H 1.09008 * 109.47308 * 189.34390 * 20 18 7 43 43 H 1.08999 * 109.47928 * 309.34840 * 20 18 7 44 44 H 0.96991 * 120.00238 * 355.28653 * 21 20 18 45 45 H 0.96993 * 119.99670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6949 1.2660 6 6 4.1051 -1.4317 0.0284 7 7 3.5047 -0.8290 -1.1695 8 6 4.2812 -0.3863 -2.1782 9 8 3.7824 0.2110 -3.1121 10 6 5.7384 -0.6270 -2.1489 11 6 6.6194 0.3510 -2.6155 12 6 7.9783 0.1203 -2.5913 13 6 8.4727 -1.0754 -2.0943 14 9 9.8057 -1.2939 -2.0682 15 6 7.6023 -2.0518 -1.6288 16 9 8.0896 -3.2174 -1.1502 17 6 6.2395 -1.8327 -1.6541 18 6 2.0414 -0.7238 -1.2496 19 1 1.6053 -1.7215 -1.2980 20 6 1.6518 0.0705 -2.4978 21 7 1.9570 -0.7187 -3.6937 22 6 1.6042 -0.2505 -4.9314 23 1 1.1015 0.7006 -5.0259 24 6 1.8939 -0.9982 -6.0646 25 7 2.5079 -2.1567 -5.9496 26 14 1.4133 -0.3594 -7.7529 27 1 2.0856 0.9415 -7.9998 28 1 1.8317 -1.3368 -8.7895 29 1 -0.0590 -0.1746 -7.8116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6581 -0.2245 2.1389 34 1 1.6967 -1.7572 1.2353 35 1 3.9159 0.3389 1.2542 36 1 3.9334 -1.1896 2.1672 37 1 3.8339 -2.4861 0.0821 38 1 5.1896 -1.3331 -0.0174 39 1 6.2364 1.2850 -2.9990 40 1 8.6594 0.8747 -2.9566 41 1 5.5624 -2.5924 -1.2924 42 1 0.5845 0.2904 -2.4702 43 1 2.2144 1.0037 -2.5250 44 1 2.4089 -1.5727 -3.6090 45 1 2.7106 -2.6788 -6.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482494454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:00 Heat of formation + Delta-G solvation = -61.888870 kcal Electronic energy + Delta-G solvation = -30771.877650 eV Core-core repulsion = 26426.622557 eV Total energy + Delta-G solvation = -4345.255093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.60104 -49.67604 -41.88542 -39.74390 -38.32399 -36.35835 -34.93273 -33.65541 -32.18498 -31.97008 -31.49419 -28.47139 -27.15755 -26.00874 -24.79248 -24.25179 -23.73575 -22.28784 -21.44582 -20.61162 -19.24819 -18.89610 -18.43869 -18.10765 -17.46470 -17.23563 -16.83702 -16.58626 -16.09821 -16.06946 -15.79872 -15.51175 -15.47069 -15.40036 -15.18816 -14.90450 -14.54900 -14.18278 -14.03041 -13.77497 -13.71024 -13.54314 -13.35818 -13.13077 -12.94130 -12.79151 -12.72765 -12.52651 -12.42167 -12.13485 -11.92273 -11.81737 -11.59866 -11.52461 -11.09812 -10.86894 -10.20817 -10.03827 -9.79599 -9.47010 -8.62200 -7.83145 -5.01908 -0.48675 -0.14206 1.44461 1.48283 1.53812 1.73273 2.03179 2.38268 2.62517 2.65515 3.16223 3.36576 3.49486 3.51874 3.77260 3.77806 3.88054 3.90875 3.99690 4.12044 4.29989 4.35287 4.43371 4.51726 4.54272 4.58279 4.63307 4.71503 4.82266 4.85471 4.86450 4.87945 4.97388 5.05577 5.08227 5.15743 5.25818 5.30538 5.34226 5.44327 5.53356 5.54852 5.57043 5.82079 6.37932 6.56000 7.40747 7.45864 8.24008 8.46495 9.41201 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.005082 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.921912 B = 5508.840328 C = 8079.302611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.089 3.911 7 N -0.606 5.606 8 C 0.517 3.483 9 O -0.492 6.492 10 C -0.106 4.106 11 C -0.054 4.054 12 C -0.114 4.114 13 C 0.077 3.923 14 F -0.129 7.129 15 C 0.056 3.944 16 F -0.131 7.131 17 C -0.096 4.096 18 C 0.154 3.846 19 H 0.062 0.938 20 C 0.161 3.839 21 N -0.705 5.705 22 C -0.209 4.209 23 H 0.062 0.938 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.964 3.036 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.278 1.278 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.366 0.634 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 3.178 19.972 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.165 4.165 6 C -0.032 4.032 7 N -0.341 5.341 8 C 0.303 3.697 9 O -0.365 6.365 10 C -0.109 4.109 11 C -0.073 4.073 12 C -0.132 4.132 13 C 0.056 3.944 14 F -0.108 7.108 15 C 0.036 3.964 16 F -0.109 7.109 17 C -0.115 4.115 18 C 0.050 3.950 19 H 0.080 0.920 20 C 0.035 3.965 21 N -0.346 5.346 22 C -0.341 4.341 23 H 0.080 0.920 24 C -0.274 4.274 25 N -0.626 5.626 26 Si 0.795 3.205 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.205 1.205 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.166 0.834 40 H 0.199 0.801 41 H 0.180 0.820 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.197 0.803 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.555 3.591 19.363 21.093 hybrid contribution 0.309 -0.519 -1.418 1.541 sum 7.864 3.072 17.946 19.832 Atomic orbital electron populations 1.21825 0.93766 1.02343 1.02238 1.21420 0.96526 0.99425 0.93654 0.91470 1.21575 0.95295 1.01010 0.96700 1.21983 0.95967 1.01159 0.97415 1.22444 0.99236 0.97660 0.83862 1.47864 1.05905 1.61762 1.18571 1.18521 0.86293 0.82075 0.82762 1.91197 1.72507 1.38659 1.34099 1.20034 0.93979 0.95511 1.01391 1.21258 0.91802 0.99479 0.94748 1.21246 0.96066 0.96042 0.99879 1.17974 0.77330 0.95635 1.03429 1.91530 1.29820 1.95036 1.94374 1.17508 0.91961 0.83180 1.03716 1.91529 1.88250 1.45183 1.85949 1.21382 0.93020 0.98094 0.99012 1.21438 0.79181 0.98828 0.95508 0.92045 1.21018 0.95559 0.94827 0.85100 1.42325 1.69221 1.21530 1.01481 1.19418 1.27649 1.01357 0.85713 0.91973 1.25339 1.03402 0.97927 1.00742 1.69802 1.49763 1.14872 1.28163 0.85323 0.77911 0.76722 0.80549 1.21367 1.22352 1.20469 0.92361 0.90337 0.93628 0.89619 0.91270 0.91826 0.88093 0.90352 0.88524 0.83401 0.80120 0.82042 0.96309 0.95725 0.80252 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.98 71.98 0.65 -2.44 16 2 C -0.09 -2.08 2.34 -10.71 -0.03 -2.11 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -1.75 5.17 30.62 0.16 -1.59 16 5 C -0.13 -1.93 6.10 30.82 0.19 -1.74 16 6 C 0.09 1.79 4.84 86.51 0.42 2.21 16 7 N -0.61 -18.09 2.97 -797.72 -2.37 -20.46 16 8 C 0.52 18.89 6.73 86.75 0.58 19.48 16 9 O -0.49 -23.36 10.69 -3.94 -0.04 -23.40 16 10 C -0.11 -3.15 5.20 -20.09 -0.10 -3.25 16 11 C -0.05 -1.41 9.62 22.52 0.22 -1.19 16 12 C -0.11 -2.41 10.01 22.27 0.22 -2.19 16 13 C 0.08 1.81 7.31 22.50 0.16 1.98 16 14 F -0.13 -3.09 17.18 44.97 0.77 -2.32 16 15 C 0.06 1.41 7.30 22.37 0.16 1.58 16 16 F -0.13 -3.35 17.18 44.97 0.77 -2.57 16 17 C -0.10 -2.47 7.34 22.56 0.17 -2.31 16 18 C 0.15 4.91 2.39 44.97 0.11 5.02 16 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 20 C 0.16 6.89 4.79 86.38 0.41 7.31 16 21 N -0.71 -37.98 3.24 -343.44 -1.11 -39.09 16 22 C -0.21 -12.48 9.70 84.03 0.82 -11.66 16 23 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 24 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 25 N -0.97 -62.82 13.06 21.65 0.28 -62.54 16 26 Si 0.96 49.41 29.55 68.60 2.03 51.44 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 29 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.15 6.43 -2.39 -0.02 1.14 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 38 H 0.10 1.79 4.63 -2.39 -0.01 1.78 16 39 H 0.15 3.86 8.03 -2.92 -0.02 3.84 16 40 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.16 3.77 6.32 -2.91 -0.02 3.75 16 42 H 0.02 0.81 6.26 -2.38 -0.01 0.80 16 43 H 0.03 1.16 6.29 -2.39 -0.02 1.15 16 44 H 0.37 21.15 7.08 -92.72 -0.66 20.49 16 45 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.41 360.94 5.31 -70.09 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.37 Total: 24.38 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.60 Total: 4.47 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -3.20 Total: -122.09 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.54 Total: -4.89 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.03 Total: 51.44 kcal Total: -75.41 5.31 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482494454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.206 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds