Wall clock time and date at job start Tue Mar 31 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 59.99968 * 12 10 8 14 14 H 1.48506 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47180 * 299.99612 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.53007 * 109.46507 * 180.02562 * 21 19 18 23 23 O 1.42900 * 109.46553 * 180.02562 * 22 21 19 24 24 C 1.42902 * 113.99849 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47314 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.46610 * 60.00229 * 25 24 23 27 27 F 1.39895 * 109.47029 * 179.97438 * 25 24 23 28 28 F 1.39893 * 109.47564 * 300.00293 * 25 24 23 29 29 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 30 30 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 31 31 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 32 32 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 33 33 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 34 34 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 35 35 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 37 37 H 1.08995 * 109.50059 * 178.68408 * 16 5 4 38 38 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 39 39 H 1.09002 * 109.57882 * 294.70615 * 17 16 5 40 40 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 41 41 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 42 42 H 1.09000 * 109.47203 * 299.99830 * 22 21 19 43 43 H 1.08998 * 109.47387 * 60.00169 * 22 21 19 44 44 H 1.08994 * 109.47066 * 299.99993 * 24 23 22 45 45 H 1.09008 * 109.46930 * 59.99616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.5211 -2.0601 -3.4531 14 1 7.8273 -2.4263 -5.7480 15 1 7.7611 -0.1943 -4.8029 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5042 -2.2575 4.2473 23 8 0.9797 -3.0424 5.3427 24 6 -0.0343 -3.4028 6.2829 25 6 0.5848 -4.2372 7.4060 26 9 1.5745 -3.4885 8.0518 27 9 -0.4079 -4.5896 8.3266 28 9 1.1539 -5.3959 6.8669 29 1 -0.3633 0.5968 0.8367 30 1 -0.3634 0.4261 -0.9351 31 1 -0.3635 -1.0229 0.0986 32 1 1.7659 -0.1695 -2.1366 33 1 1.6028 -1.7269 -1.2892 34 1 3.4850 -2.1161 -2.8713 35 1 5.3626 -3.1880 -5.4115 36 1 3.4982 -2.6529 0.0085 37 1 5.0411 -1.7696 0.1058 38 1 3.6518 -1.5690 2.1991 39 1 3.9921 0.0025 1.4329 40 1 2.1001 -2.8594 2.9317 41 1 2.4293 -1.3733 3.8544 42 1 0.0724 -1.3308 4.6252 43 1 -0.2561 -2.8169 3.7022 44 1 -0.4780 -2.5001 6.7026 45 1 -0.8053 -3.9865 5.7797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483905688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:14 Heat of formation + Delta-G solvation = -216.150015 kcal Electronic energy + Delta-G solvation = -29701.680463 eV Core-core repulsion = 24918.966880 eV Total energy + Delta-G solvation = -4782.713583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.47389 -48.03915 -47.92095 -40.56792 -38.65576 -37.45390 -34.56764 -33.48916 -31.98239 -31.71346 -29.68763 -29.15930 -27.03137 -24.71608 -24.00641 -23.68539 -22.96629 -21.48894 -20.14478 -19.11626 -19.01020 -18.90309 -18.06343 -17.32525 -17.11988 -16.72929 -16.09605 -15.97537 -15.38631 -14.88101 -14.83639 -14.79410 -14.39839 -14.33661 -14.11487 -14.09866 -14.06080 -13.84907 -13.74138 -13.57046 -13.25478 -12.96493 -12.67908 -12.26351 -12.18458 -12.03220 -11.76735 -11.68252 -11.64528 -11.38789 -10.92748 -10.87016 -10.81371 -10.47674 -10.32302 -10.30237 -9.90610 -9.74996 -9.08807 -8.94664 -8.49715 -7.02398 -5.81239 -3.10805 1.99117 2.54963 2.70845 3.14966 3.40365 3.40997 3.45090 3.46163 3.56537 4.02030 4.41605 4.52851 4.53906 4.54442 4.69579 4.70529 4.98457 5.10857 5.13703 5.24921 5.31841 5.39725 5.44573 5.47562 5.53391 5.59745 5.77778 5.85531 5.95904 6.09120 6.21933 6.31489 6.35129 6.39059 6.42768 6.49504 6.68456 6.85108 6.99676 7.45271 7.64075 8.14024 8.36907 9.48088 10.05184 10.39748 11.41161 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002094 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.428684 B =13366.459602 C =14508.803713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.071 0.929 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.600 5.600 19 C 0.521 3.479 20 O -0.544 6.544 21 C -0.144 4.144 22 C 0.081 3.919 23 O -0.376 6.376 24 C 0.021 3.979 25 C 0.461 3.539 26 F -0.176 7.176 27 F -0.178 7.178 28 F -0.175 7.175 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 1.195 23.027 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.333 5.333 19 C 0.309 3.691 20 O -0.423 6.423 21 C -0.183 4.183 22 C 0.005 3.995 23 O -0.295 6.295 24 C -0.058 4.058 25 C 0.407 3.593 26 F -0.157 7.157 27 F -0.159 7.159 28 F -0.156 7.156 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.715 1.338 22.943 25.795 hybrid contribution 0.898 -0.303 -0.413 1.034 sum -10.817 1.035 22.529 25.013 Atomic orbital electron populations 1.22187 0.92907 1.03369 1.00837 1.21325 0.95372 0.95179 0.83722 0.91077 1.22301 0.97614 1.00931 0.96539 1.20162 0.90875 0.94986 0.87152 0.93447 1.42419 1.12966 1.54227 1.26782 1.19179 0.89133 1.22319 1.06630 0.91215 1.24757 0.98181 0.99780 0.98166 1.69650 1.35474 1.33341 1.19552 0.86278 0.84532 0.77473 0.77935 1.21249 1.21705 1.21261 1.22689 1.01849 1.00028 0.94736 1.21920 0.79302 1.00789 0.99861 1.48208 1.07745 1.57207 1.20110 1.20173 0.85957 0.79879 0.83120 1.90738 1.17190 1.57328 1.77088 1.21561 0.99466 1.02066 0.95254 1.22282 0.96216 0.94885 0.86096 1.87839 1.32816 1.73047 1.35842 1.23476 0.91921 1.00261 0.90127 1.20195 0.76690 0.79296 0.83122 1.93223 1.63289 1.76037 1.83192 1.93210 1.61668 1.92550 1.68511 1.93229 1.85570 1.51187 1.85636 0.90685 0.93725 0.91928 0.90576 0.91805 0.78255 0.93411 0.92131 0.90530 0.90222 0.91245 0.87664 0.87930 0.91612 0.91520 0.88472 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.61 37.16 0.28 -1.53 16 2 C 0.15 1.99 3.49 -67.60 -0.24 1.76 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.18 3.28 2.73 -67.89 -0.19 3.09 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.35 5.12 -53.39 -0.27 -17.62 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 12 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 17 C 0.10 1.23 6.35 -3.71 -0.02 1.21 16 18 N -0.60 -7.56 2.97 -165.22 -0.49 -8.06 16 19 C 0.52 6.33 7.50 -10.98 -0.08 6.25 16 20 O -0.54 -7.72 11.55 5.56 0.06 -7.65 16 21 C -0.14 -1.33 4.43 -27.88 -0.12 -1.45 16 22 C 0.08 0.70 5.23 37.16 0.19 0.89 16 23 O -0.38 -3.34 10.23 -35.23 -0.36 -3.70 16 24 C 0.02 0.13 5.90 37.16 0.22 0.35 16 25 C 0.46 3.65 3.32 37.16 0.12 3.77 16 26 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 27 F -0.18 -1.35 17.32 2.25 0.04 -1.32 16 28 F -0.17 -1.69 17.26 2.25 0.04 -1.65 16 29 H 0.07 1.04 6.54 -51.92 -0.34 0.70 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 32 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 0.95 7.93 -51.93 -0.41 0.54 16 41 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -30.96 374.67 -6.70 -37.66 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.75 Total: 5.87 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.36 Total: 2.47 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.04 Total: -52.59 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.30 Total: -11.35 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.12 Total: -4.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.96 -6.70 -37.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.491 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds