Wall clock time and date at job start Tue Mar 31 2020 21:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 59.99968 * 12 10 8 14 14 H 1.48506 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47180 * 299.99612 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.53007 * 109.46507 * 180.02562 * 21 19 18 23 23 O 1.42900 * 109.46553 * 180.02562 * 22 21 19 24 24 C 1.42902 * 113.99849 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47314 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.46610 * 60.00229 * 25 24 23 27 27 F 1.39895 * 109.47029 * 179.97438 * 25 24 23 28 28 F 1.39893 * 109.47564 * 300.00293 * 25 24 23 29 29 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 30 30 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 31 31 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 32 32 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 33 33 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 34 34 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 35 35 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 37 37 H 1.08995 * 109.50059 * 178.68408 * 16 5 4 38 38 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 39 39 H 1.09002 * 109.57882 * 294.70615 * 17 16 5 40 40 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 41 41 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 42 42 H 1.09000 * 109.47203 * 299.99830 * 22 21 19 43 43 H 1.08998 * 109.47387 * 60.00169 * 22 21 19 44 44 H 1.08994 * 109.47066 * 299.99993 * 24 23 22 45 45 H 1.09008 * 109.46930 * 59.99616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.5211 -2.0601 -3.4531 14 1 7.8273 -2.4263 -5.7480 15 1 7.7611 -0.1943 -4.8029 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5042 -2.2575 4.2473 23 8 0.9797 -3.0424 5.3427 24 6 -0.0343 -3.4028 6.2829 25 6 0.5848 -4.2372 7.4060 26 9 1.5745 -3.4885 8.0518 27 9 -0.4079 -4.5896 8.3266 28 9 1.1539 -5.3959 6.8669 29 1 -0.3633 0.5968 0.8367 30 1 -0.3634 0.4261 -0.9351 31 1 -0.3635 -1.0229 0.0986 32 1 1.7659 -0.1695 -2.1366 33 1 1.6028 -1.7269 -1.2892 34 1 3.4850 -2.1161 -2.8713 35 1 5.3626 -3.1880 -5.4115 36 1 3.4982 -2.6529 0.0085 37 1 5.0411 -1.7696 0.1058 38 1 3.6518 -1.5690 2.1991 39 1 3.9921 0.0025 1.4329 40 1 2.1001 -2.8594 2.9317 41 1 2.4293 -1.3733 3.8544 42 1 0.0724 -1.3308 4.6252 43 1 -0.2561 -2.8169 3.7022 44 1 -0.4780 -2.5001 6.7026 45 1 -0.8053 -3.9865 5.7797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483905688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:13 Heat of formation + Delta-G solvation = -235.400917 kcal Electronic energy + Delta-G solvation = -29702.515245 eV Core-core repulsion = 24918.966880 eV Total energy + Delta-G solvation = -4783.548365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.11031 -48.66406 -48.59745 -41.58714 -39.34916 -38.61692 -36.16278 -34.47178 -33.71091 -32.53734 -31.00651 -30.13491 -28.29297 -26.08779 -25.13942 -24.36439 -24.26132 -22.58048 -21.50916 -20.05522 -19.64552 -19.64064 -19.09111 -18.70243 -18.07834 -17.42697 -17.03251 -16.85413 -16.66085 -16.29587 -15.55667 -15.50131 -15.45921 -15.43547 -15.13867 -15.04498 -14.81498 -14.77314 -14.76112 -14.65086 -14.43831 -14.23826 -13.74133 -13.42281 -13.31105 -13.06656 -12.82501 -12.73299 -12.64408 -12.58609 -12.44878 -12.32613 -12.21556 -12.00308 -11.89163 -11.68895 -11.34555 -10.90136 -10.86727 -10.11540 -9.56865 -8.99748 -7.92302 -5.20917 1.39544 1.48888 1.51232 1.57132 1.61566 1.92839 2.38833 2.57659 2.84314 3.00436 3.37137 3.40970 3.63655 3.75763 3.83709 4.02480 4.05654 4.08845 4.12334 4.13241 4.17227 4.28764 4.36896 4.47633 4.60338 4.64709 4.73142 4.74185 4.81930 4.83947 4.87733 5.03902 5.09661 5.18414 5.29816 5.43560 5.51716 5.56497 5.72110 5.77720 6.29316 6.47462 7.17919 7.35349 8.11655 8.34113 9.31117 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002094 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.428684 B =13366.459602 C =14508.803713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.172 3.828 6 H 0.048 0.952 7 N -0.739 5.739 8 C -0.235 4.235 9 H 0.079 0.921 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.278 1.278 16 C -0.142 4.142 17 C 0.114 3.886 18 N -0.604 5.604 19 C 0.519 3.481 20 O -0.565 6.565 21 C -0.139 4.139 22 C 0.085 3.915 23 O -0.392 6.392 24 C 0.019 3.981 25 C 0.460 3.540 26 F -0.186 7.186 27 F -0.177 7.177 28 F -0.188 7.188 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 2.249 25.045 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.064 3.936 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.097 0.903 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.203 1.203 14 H -0.227 1.227 15 H -0.204 1.204 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.337 5.337 19 C 0.309 3.691 20 O -0.445 6.445 21 C -0.179 4.179 22 C 0.009 3.991 23 O -0.312 6.312 24 C -0.059 4.059 25 C 0.405 3.595 26 F -0.168 7.168 27 F -0.158 7.158 28 F -0.169 7.169 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.139 0.861 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.540 2.422 25.029 27.668 hybrid contribution 0.766 -0.616 -0.958 1.373 sum -10.774 1.806 24.071 26.434 Atomic orbital electron populations 1.22052 0.92615 1.02349 1.01143 1.21221 0.95454 0.95432 0.83062 0.89865 1.22150 0.95817 1.00472 0.97806 1.20431 0.92261 0.94727 0.86212 0.93441 1.42662 1.12140 1.54427 1.28555 1.19589 0.90141 1.20922 1.05981 0.90302 1.25553 1.02005 1.00551 0.98988 1.69815 1.37221 1.35169 1.20097 0.85249 0.80302 0.77373 0.77073 1.20267 1.22663 1.20434 1.22458 1.01070 0.99313 0.95448 1.21915 0.78731 1.01666 0.98583 1.48250 1.08189 1.57304 1.19939 1.20637 0.85528 0.79480 0.83466 1.90732 1.18122 1.58008 1.77686 1.21543 1.00170 1.01837 0.94339 1.22204 0.95750 0.95097 0.86006 1.87790 1.33991 1.73220 1.36207 1.23673 0.91491 1.01319 0.89376 1.20472 0.76438 0.79008 0.83532 1.93201 1.63868 1.76198 1.83497 1.93210 1.61455 1.92557 1.68588 1.93202 1.85868 1.52056 1.85809 0.90820 0.93011 0.93481 0.91391 0.93116 0.79890 0.94208 0.93474 0.91664 0.87145 0.89587 0.87220 0.85980 0.91041 0.91855 0.86101 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 7.61 71.98 0.55 -2.63 16 2 C 0.15 3.88 3.49 44.97 0.16 4.04 16 3 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.89 4.84 30.67 0.15 -3.74 16 5 C 0.17 6.22 2.73 45.02 0.12 6.34 16 6 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 7 N -0.74 -35.84 5.12 -322.82 -1.65 -37.49 16 8 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 9 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 12 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 C -0.14 -4.30 5.66 30.67 0.17 -4.12 16 17 C 0.11 2.35 6.35 86.36 0.55 2.90 16 18 N -0.60 -13.84 2.97 -795.03 -2.36 -16.21 16 19 C 0.52 11.40 7.50 87.66 0.66 12.06 16 20 O -0.57 -15.01 11.55 -3.01 -0.03 -15.05 16 21 C -0.14 -2.17 4.43 29.85 0.13 -2.04 16 22 C 0.09 1.25 5.23 71.98 0.38 1.63 16 23 O -0.39 -6.02 10.23 -148.98 -1.52 -7.54 16 24 C 0.02 0.20 5.90 71.98 0.42 0.62 16 25 C 0.46 6.59 3.32 71.98 0.24 6.83 16 26 F -0.19 -3.24 17.26 44.97 0.78 -2.46 16 27 F -0.18 -2.44 17.32 44.97 0.78 -1.66 16 28 F -0.19 -3.44 17.26 44.97 0.78 -2.66 16 29 H 0.07 1.93 6.54 -2.38 -0.02 1.92 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.34 6.96 -2.39 -0.02 1.33 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.37 19.73 7.80 -92.71 -0.72 19.01 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 1.66 5.93 -2.39 -0.01 1.65 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.66 7.93 -2.39 -0.02 1.64 16 41 H 0.12 1.46 7.71 -2.39 -0.02 1.44 16 42 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 43 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 44 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -67.27 374.67 4.18 -63.09 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.29 Total: 25.24 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.83 Total: 6.22 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.73 Total: -112.43 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.56 Total: -22.59 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 2.33 Total: -6.78 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.27 4.18 -63.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.311 kcal (2) G-P(sol) polarization free energy of solvation -67.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds