Wall clock time and date at job start Tue Mar 31 2020 21:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58516 * 2 1 4 4 C 1.53187 * 109.58793 * 239.71319 * 2 1 3 5 5 C 1.53043 * 109.30978 * 185.57837 * 4 2 1 6 6 H 1.08997 * 109.45692 * 181.38055 * 5 4 2 7 7 N 1.46500 * 109.45027 * 301.35080 * 5 4 2 8 8 C 1.36937 * 119.99841 * 205.06223 * 7 5 4 9 9 H 1.08005 * 120.00185 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99809 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00247 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99794 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47431 * 59.99986 * 12 10 8 14 14 H 1.48504 * 109.47166 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46862 * 299.99886 * 12 10 8 16 16 C 1.53043 * 109.53876 * 61.36662 * 5 4 2 17 17 C 1.53192 * 109.33636 * 298.61283 * 16 5 4 18 18 N 1.46928 * 109.58485 * 120.42103 * 2 1 3 19 19 C 1.34776 * 120.62820 * 353.39636 * 18 2 1 20 20 O 1.21275 * 120.00273 * 5.06946 * 19 18 2 21 21 C 1.50701 * 119.99854 * 185.07051 * 19 18 2 22 22 C 1.53000 * 109.47171 * 180.02562 * 21 19 18 23 23 O 1.42905 * 109.46999 * 180.02562 * 22 21 19 24 24 C 1.42898 * 113.99861 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47289 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.46777 * 60.00057 * 25 24 23 27 27 F 1.39899 * 109.46961 * 180.02562 * 25 24 23 28 28 F 1.39895 * 109.46822 * 299.99829 * 25 24 23 29 29 H 1.08999 * 109.47240 * 183.88459 * 1 2 3 30 30 H 1.08998 * 109.47120 * 303.89105 * 1 2 3 31 31 H 1.09008 * 109.46856 * 63.88290 * 1 2 3 32 32 H 1.08994 * 109.49788 * 65.62530 * 4 2 1 33 33 H 1.09002 * 109.51921 * 305.54360 * 4 2 1 34 34 H 0.96995 * 119.99953 * 25.05621 * 7 5 4 35 35 H 0.97000 * 119.99755 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.50269 * 58.58185 * 16 5 4 37 37 H 1.08999 * 109.49606 * 178.65170 * 16 5 4 38 38 H 1.09003 * 109.58563 * 174.43418 * 17 16 5 39 39 H 1.08994 * 109.59093 * 294.86513 * 17 16 5 40 40 H 1.09005 * 109.47244 * 300.00075 * 21 19 18 41 41 H 1.09001 * 109.47402 * 60.00094 * 21 19 18 42 42 H 1.08998 * 109.46767 * 299.99729 * 22 21 19 43 43 H 1.08997 * 109.47524 * 59.99784 * 22 21 19 44 44 H 1.09003 * 109.47357 * 299.99968 * 24 23 22 45 45 H 1.09006 * 109.47257 * 59.99748 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5676 -0.8465 -1.1710 6 1 3.9379 -1.3423 -2.0683 7 7 4.1568 0.4913 -1.0740 8 6 5.4407 0.7063 -1.4989 9 1 6.0191 -0.1104 -1.9050 10 6 5.9989 1.9739 -1.4075 11 7 5.2942 2.9691 -0.9120 12 14 7.7501 2.2674 -1.9877 13 1 7.8565 1.9318 -3.4303 14 1 8.1067 3.6944 -1.7834 15 1 8.6795 1.4092 -1.2099 16 6 3.9569 -1.6657 0.0617 17 6 3.4657 -0.9487 1.3231 18 7 2.0225 -0.7009 1.1937 19 6 1.1673 -1.1090 2.1521 20 8 -0.0281 -0.9815 1.9924 21 6 1.6965 -1.7238 3.4222 22 6 0.5262 -2.0970 4.3343 23 8 1.0281 -2.6794 5.5389 24 6 0.0111 -3.0655 6.4655 25 6 0.6597 -3.6739 7.7105 26 9 1.5001 -2.7283 8.3078 27 9 -0.3361 -4.0523 8.6174 28 9 1.4079 -4.7978 7.3445 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3633 0.5730 0.8530 31 1 -0.3633 0.4524 -0.9228 32 1 1.7661 -0.1643 -2.1369 33 1 1.6030 -1.7237 -1.2938 34 1 3.6375 1.2246 -0.7090 35 1 5.6845 3.8549 -0.8479 36 1 3.4984 -2.6527 0.0023 37 1 5.0412 -1.7701 0.1015 38 1 3.6528 -1.5748 2.1956 39 1 3.9909 0.0001 1.4322 40 1 2.2690 -2.6196 3.1812 41 1 2.3406 -1.0072 3.9318 42 1 -0.0465 -1.2015 4.5753 43 1 -0.1176 -2.8138 3.8245 44 1 -0.5723 -2.1899 6.7503 45 1 -0.6436 -3.8025 6.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483905689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:16 Heat of formation + Delta-G solvation = -212.584638 kcal Electronic energy + Delta-G solvation = -30142.982588 eV Core-core repulsion = 25360.423611 eV Total energy + Delta-G solvation = -4782.558977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.43346 -47.99939 -47.88016 -40.44074 -38.59802 -37.46393 -34.23859 -33.34693 -31.96606 -31.58899 -29.55557 -29.02663 -26.99782 -24.59600 -23.86335 -23.63739 -23.42335 -21.57634 -19.88851 -19.00615 -18.96803 -18.43312 -17.93460 -17.25157 -17.08892 -16.65948 -15.93946 -15.79002 -15.41211 -14.80710 -14.80179 -14.60499 -14.35552 -14.26886 -14.06711 -14.05939 -14.01684 -13.90977 -13.74434 -13.45684 -13.12595 -12.94645 -12.54729 -12.12000 -12.09604 -11.99053 -11.80537 -11.61877 -11.38788 -11.21421 -10.92575 -10.83014 -10.65777 -10.44217 -10.29384 -10.24631 -9.98374 -9.66987 -8.98364 -8.88929 -8.20569 -7.03031 -5.82584 -3.11771 2.04847 2.72440 2.79832 3.28671 3.39853 3.45093 3.45781 3.47549 3.61036 4.08780 4.52131 4.54341 4.59148 4.62363 4.78857 4.83514 5.12206 5.24715 5.28164 5.36284 5.48206 5.52137 5.56987 5.58466 5.67952 5.73218 5.86669 5.97549 6.10500 6.14087 6.28208 6.39183 6.42919 6.46067 6.54142 6.69874 6.73526 6.80993 7.01516 7.64511 7.67468 8.31684 8.35919 9.47338 10.03565 10.38429 11.39751 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002291 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.748100 B =12221.277941 C =13202.055371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.149 4.149 17 C 0.111 3.889 18 N -0.594 5.594 19 C 0.518 3.482 20 O -0.549 6.549 21 C -0.143 4.143 22 C 0.082 3.918 23 O -0.376 6.376 24 C 0.021 3.979 25 C 0.461 3.539 26 F -0.175 7.175 27 F -0.178 7.178 28 F -0.176 7.176 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 -13.109 13.528 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.190 4.190 17 C -0.011 4.011 18 N -0.326 5.326 19 C 0.306 3.694 20 O -0.429 6.429 21 C -0.183 4.183 22 C 0.006 3.994 23 O -0.296 6.296 24 C -0.058 4.058 25 C 0.407 3.593 26 F -0.157 7.157 27 F -0.160 7.160 28 F -0.157 7.157 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.174 -13.047 13.406 22.319 hybrid contribution 0.956 0.392 -0.015 1.033 sum -11.218 -12.655 13.391 21.571 Atomic orbital electron populations 1.22197 0.93175 1.03156 1.00407 1.21285 0.94831 0.95971 0.83671 0.90150 1.22242 0.97375 1.00233 0.97366 1.20198 0.90441 0.88123 0.94986 0.93110 1.42499 1.13814 1.04727 1.75381 1.19186 0.89817 0.94160 1.34014 0.91243 1.24724 0.98280 0.95899 1.01852 1.69639 1.36606 1.00690 1.51149 0.86295 0.84698 0.76850 0.78472 1.21327 1.21761 1.21301 1.22507 1.01489 0.97921 0.97096 1.21803 0.79017 1.01947 0.98336 1.48172 1.07921 1.56409 1.20121 1.20145 0.86393 0.78442 0.84420 1.90738 1.15556 1.56886 1.79718 1.21555 0.99229 1.03401 0.94094 1.22285 0.95907 0.98042 0.83177 1.87842 1.30897 1.81595 1.29221 1.23471 0.91549 1.02239 0.88535 1.20205 0.76972 0.76838 0.85295 1.93228 1.72633 1.64373 1.85424 1.93208 1.61443 1.91723 1.69602 1.93221 1.77647 1.53426 1.91429 0.91452 0.91458 0.94128 0.90757 0.92107 0.78159 0.93423 0.93273 0.90708 0.90951 0.89558 0.87989 0.87826 0.91572 0.91636 0.88455 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.59 37.16 0.28 -1.71 16 2 C 0.14 2.33 3.19 -67.60 -0.22 2.11 16 3 H 0.08 1.48 6.64 -51.92 -0.35 1.13 16 4 C -0.13 -2.12 5.07 -26.61 -0.13 -2.26 16 5 C 0.17 3.14 3.10 -67.89 -0.21 2.93 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.51 4.31 -53.38 -0.23 -16.74 16 8 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 12 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C -0.15 -2.34 5.78 -26.61 -0.15 -2.49 16 17 C 0.11 1.65 6.07 -3.67 -0.02 1.63 16 18 N -0.59 -8.83 2.97 -165.16 -0.49 -9.33 16 19 C 0.52 7.17 7.60 -10.99 -0.08 7.09 16 20 O -0.55 -8.57 11.38 5.56 0.06 -8.51 16 21 C -0.14 -1.52 4.47 -27.88 -0.12 -1.65 16 22 C 0.08 0.79 5.23 37.16 0.19 0.98 16 23 O -0.38 -3.65 10.23 -35.23 -0.36 -4.01 16 24 C 0.02 0.14 5.90 37.16 0.22 0.36 16 25 C 0.46 3.89 3.32 37.16 0.12 4.01 16 26 F -0.18 -1.77 17.26 2.25 0.04 -1.73 16 27 F -0.18 -1.43 17.32 2.25 0.04 -1.39 16 28 F -0.18 -1.74 17.26 2.25 0.04 -1.70 16 29 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 30 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 31 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.38 9.40 6.06 -40.82 -0.25 9.15 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.87 5.97 -51.93 -0.31 0.56 16 39 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 40 H 0.10 0.99 7.48 -51.93 -0.39 0.60 16 41 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -29.65 370.32 -6.57 -36.22 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.58 Total: 7.05 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.37 Total: 4.20 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.00 Total: -52.29 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.30 Total: -12.52 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.12 Total: -4.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.65 -6.57 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.367 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds