Wall clock time and date at job start Tue Mar 31 2020 21:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58516 * 2 1 4 4 C 1.53187 * 109.58793 * 239.71319 * 2 1 3 5 5 C 1.53043 * 109.30978 * 185.57837 * 4 2 1 6 6 H 1.08997 * 109.45692 * 181.38055 * 5 4 2 7 7 N 1.46500 * 109.45027 * 301.35080 * 5 4 2 8 8 C 1.36937 * 119.99841 * 205.06223 * 7 5 4 9 9 H 1.08005 * 120.00185 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99809 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00247 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99794 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47431 * 59.99986 * 12 10 8 14 14 H 1.48504 * 109.47166 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46862 * 299.99886 * 12 10 8 16 16 C 1.53043 * 109.53876 * 61.36662 * 5 4 2 17 17 C 1.53192 * 109.33636 * 298.61283 * 16 5 4 18 18 N 1.46928 * 109.58485 * 120.42103 * 2 1 3 19 19 C 1.34776 * 120.62820 * 353.39636 * 18 2 1 20 20 O 1.21275 * 120.00273 * 5.06946 * 19 18 2 21 21 C 1.50701 * 119.99854 * 185.07051 * 19 18 2 22 22 C 1.53000 * 109.47171 * 180.02562 * 21 19 18 23 23 O 1.42905 * 109.46999 * 180.02562 * 22 21 19 24 24 C 1.42898 * 113.99861 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47289 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.46777 * 60.00057 * 25 24 23 27 27 F 1.39899 * 109.46961 * 180.02562 * 25 24 23 28 28 F 1.39895 * 109.46822 * 299.99829 * 25 24 23 29 29 H 1.08999 * 109.47240 * 183.88459 * 1 2 3 30 30 H 1.08998 * 109.47120 * 303.89105 * 1 2 3 31 31 H 1.09008 * 109.46856 * 63.88290 * 1 2 3 32 32 H 1.08994 * 109.49788 * 65.62530 * 4 2 1 33 33 H 1.09002 * 109.51921 * 305.54360 * 4 2 1 34 34 H 0.96995 * 119.99953 * 25.05621 * 7 5 4 35 35 H 0.97000 * 119.99755 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.50269 * 58.58185 * 16 5 4 37 37 H 1.08999 * 109.49606 * 178.65170 * 16 5 4 38 38 H 1.09003 * 109.58563 * 174.43418 * 17 16 5 39 39 H 1.08994 * 109.59093 * 294.86513 * 17 16 5 40 40 H 1.09005 * 109.47244 * 300.00075 * 21 19 18 41 41 H 1.09001 * 109.47402 * 60.00094 * 21 19 18 42 42 H 1.08998 * 109.46767 * 299.99729 * 22 21 19 43 43 H 1.08997 * 109.47524 * 59.99784 * 22 21 19 44 44 H 1.09003 * 109.47357 * 299.99968 * 24 23 22 45 45 H 1.09006 * 109.47257 * 59.99748 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5676 -0.8465 -1.1710 6 1 3.9379 -1.3423 -2.0683 7 7 4.1568 0.4913 -1.0740 8 6 5.4407 0.7063 -1.4989 9 1 6.0191 -0.1104 -1.9050 10 6 5.9989 1.9739 -1.4075 11 7 5.2942 2.9691 -0.9120 12 14 7.7501 2.2674 -1.9877 13 1 7.8565 1.9318 -3.4303 14 1 8.1067 3.6944 -1.7834 15 1 8.6795 1.4092 -1.2099 16 6 3.9569 -1.6657 0.0617 17 6 3.4657 -0.9487 1.3231 18 7 2.0225 -0.7009 1.1937 19 6 1.1673 -1.1090 2.1521 20 8 -0.0281 -0.9815 1.9924 21 6 1.6965 -1.7238 3.4222 22 6 0.5262 -2.0970 4.3343 23 8 1.0281 -2.6794 5.5389 24 6 0.0111 -3.0655 6.4655 25 6 0.6597 -3.6739 7.7105 26 9 1.5001 -2.7283 8.3078 27 9 -0.3361 -4.0523 8.6174 28 9 1.4079 -4.7978 7.3445 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3633 0.5730 0.8530 31 1 -0.3633 0.4524 -0.9228 32 1 1.7661 -0.1643 -2.1369 33 1 1.6030 -1.7237 -1.2938 34 1 3.6375 1.2246 -0.7090 35 1 5.6845 3.8549 -0.8479 36 1 3.4984 -2.6527 0.0023 37 1 5.0412 -1.7701 0.1015 38 1 3.6528 -1.5748 2.1956 39 1 3.9909 0.0001 1.4322 40 1 2.2690 -2.6196 3.1812 41 1 2.3406 -1.0072 3.9318 42 1 -0.0465 -1.2015 4.5753 43 1 -0.1176 -2.8138 3.8245 44 1 -0.5723 -2.1899 6.7503 45 1 -0.6436 -3.8025 6.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483905689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:15 Heat of formation + Delta-G solvation = -230.201813 kcal Electronic energy + Delta-G solvation = -30143.746526 eV Core-core repulsion = 25360.423611 eV Total energy + Delta-G solvation = -4783.322915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.10834 -48.66115 -48.59626 -41.61177 -39.38747 -38.68360 -35.84602 -34.46034 -33.67064 -32.51220 -30.85842 -30.14353 -28.30404 -25.81809 -25.43083 -24.74748 -24.25755 -22.76764 -21.14096 -19.76069 -19.63933 -19.56421 -19.15943 -18.67413 -18.01661 -17.44411 -16.99190 -16.80353 -16.68792 -16.19047 -15.64201 -15.53790 -15.48433 -15.41179 -15.14781 -15.04470 -14.83268 -14.76624 -14.75889 -14.60588 -14.38488 -14.18600 -13.86656 -13.39845 -13.30302 -13.01627 -12.83386 -12.73901 -12.65503 -12.49683 -12.40448 -12.32811 -12.16279 -11.95109 -11.86770 -11.59549 -11.34520 -10.89621 -10.86892 -10.05623 -9.47625 -8.94163 -7.89459 -5.16431 1.40106 1.50403 1.51564 1.57489 1.63570 1.94345 2.39934 2.59804 2.84580 3.00722 3.37896 3.44318 3.65385 3.85866 3.90956 4.01999 4.05704 4.09934 4.12408 4.13481 4.16119 4.32057 4.41241 4.48384 4.53230 4.68449 4.74620 4.81194 4.81652 4.89663 4.96273 5.09353 5.14587 5.27610 5.29650 5.37754 5.44964 5.58888 5.75121 5.78128 6.32672 6.53240 7.19528 7.39770 8.16166 8.39128 9.33664 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002291 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.748100 B =12221.277941 C =13202.055371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.146 3.854 3 H 0.049 0.951 4 C -0.122 4.122 5 C 0.164 3.836 6 H 0.046 0.954 7 N -0.730 5.730 8 C -0.231 4.231 9 H 0.076 0.924 10 C -0.074 4.074 11 N -0.970 5.970 12 Si 0.965 3.035 13 H -0.282 1.282 14 H -0.302 1.302 15 H -0.278 1.278 16 C -0.141 4.141 17 C 0.118 3.882 18 N -0.598 5.598 19 C 0.517 3.483 20 O -0.566 6.566 21 C -0.138 4.138 22 C 0.088 3.912 23 O -0.393 6.393 24 C 0.019 3.981 25 C 0.460 3.540 26 F -0.188 7.188 27 F -0.176 7.176 28 F -0.186 7.186 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.373 0.627 35 H 0.248 0.752 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -15.179 13.992 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.043 3.957 3 H 0.067 0.933 4 C -0.161 4.161 5 C 0.056 3.944 6 H 0.064 0.936 7 N -0.372 5.372 8 C -0.363 4.363 9 H 0.094 0.906 10 C -0.266 4.266 11 N -0.621 5.621 12 Si 0.796 3.204 13 H -0.208 1.208 14 H -0.228 1.228 15 H -0.204 1.204 16 C -0.181 4.181 17 C -0.004 4.004 18 N -0.330 5.330 19 C 0.307 3.693 20 O -0.447 6.447 21 C -0.178 4.178 22 C 0.012 3.988 23 O -0.312 6.312 24 C -0.059 4.059 25 C 0.406 3.594 26 F -0.169 7.169 27 F -0.158 7.158 28 F -0.168 7.168 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.673 -15.182 13.874 24.157 hybrid contribution 1.029 0.951 -0.130 1.407 sum -11.644 -14.230 13.744 22.956 Atomic orbital electron populations 1.22044 0.92181 1.02939 1.00328 1.21128 0.95410 0.94619 0.84551 0.93317 1.22124 0.95684 1.01282 0.97025 1.20455 0.91738 0.86164 0.96058 0.93555 1.42652 1.12979 1.06412 1.75131 1.19558 0.90868 0.94002 1.31840 0.90619 1.25429 1.01760 0.96075 1.03376 1.69798 1.38040 1.00709 1.53543 0.85326 0.80938 0.76019 0.78152 1.20817 1.22826 1.20450 1.22363 1.01119 0.98772 0.95864 1.21705 0.78665 1.00678 0.99386 1.48178 1.08034 1.56619 1.20174 1.20643 0.86014 0.77807 0.84836 1.90731 1.16353 1.57464 1.80113 1.21527 0.99850 1.03880 0.92526 1.22180 0.95272 0.98225 0.83154 1.87791 1.32182 1.81763 1.29500 1.23682 0.91060 1.03724 0.87441 1.20463 0.76727 0.76378 0.85854 1.93202 1.73162 1.64796 1.85761 1.93210 1.61188 1.91692 1.69677 1.93198 1.78035 1.54038 1.91511 0.91389 0.92636 0.93305 0.91435 0.89857 0.79402 0.94315 0.90368 0.91675 0.87453 0.93129 0.86323 0.87343 0.91691 0.91032 0.86430 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 7.59 71.98 0.55 -2.90 16 2 C 0.15 4.64 3.19 44.97 0.14 4.78 16 3 H 0.05 1.86 6.64 -2.38 -0.02 1.85 16 4 C -0.12 -3.76 5.07 30.67 0.16 -3.60 16 5 C 0.16 5.83 3.10 45.02 0.14 5.97 16 6 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 7 N -0.73 -33.76 4.31 -322.80 -1.39 -35.15 16 8 C -0.23 -12.00 9.93 84.03 0.83 -11.16 16 9 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 10 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 11 N -0.97 -57.57 13.06 21.65 0.28 -57.28 16 12 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 C -0.14 -4.14 5.78 30.67 0.18 -3.96 16 17 C 0.12 3.33 6.07 86.35 0.52 3.85 16 18 N -0.60 -16.99 2.97 -794.84 -2.36 -19.35 16 19 C 0.52 13.30 7.60 87.66 0.67 13.97 16 20 O -0.57 -16.68 11.38 -3.01 -0.03 -16.72 16 21 C -0.14 -2.58 4.47 29.85 0.13 -2.45 16 22 C 0.09 1.46 5.23 71.98 0.38 1.83 16 23 O -0.39 -6.62 10.23 -148.98 -1.52 -8.15 16 24 C 0.02 0.21 5.90 71.98 0.42 0.64 16 25 C 0.46 7.00 3.32 71.98 0.24 7.24 16 26 F -0.19 -3.58 17.26 44.97 0.78 -2.80 16 27 F -0.18 -2.55 17.32 44.97 0.78 -1.77 16 28 F -0.19 -3.43 17.26 44.97 0.78 -2.65 16 29 H 0.07 1.99 6.73 -2.39 -0.02 1.97 16 30 H 0.05 1.75 6.76 -2.39 -0.02 1.73 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.37 18.85 6.06 -92.71 -0.56 18.29 16 35 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.11 2.26 5.97 -2.39 -0.01 2.25 16 39 H 0.05 1.81 7.74 -2.39 -0.02 1.80 16 40 H 0.12 1.85 7.48 -2.38 -0.02 1.84 16 41 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 42 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 43 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.12 0.80 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -64.27 370.32 4.61 -59.66 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.45 Total: 26.76 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.83 Total: 10.58 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.47 Total: -111.79 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.56 Total: -24.87 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 2.33 Total: -7.23 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.27 4.61 -59.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.542 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds