Wall clock time and date at job start Tue Mar 31 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.58577 * 2 1 4 4 C 1.53196 * 109.58546 * 120.27942 * 2 1 3 5 5 C 1.53037 * 109.31040 * 65.29551 * 4 2 1 6 6 H 1.09006 * 109.46385 * 301.34352 * 5 4 2 7 7 N 1.46507 * 109.46030 * 181.38998 * 5 4 2 8 8 C 1.36936 * 120.00251 * 155.00061 * 7 5 4 9 9 H 1.07999 * 119.99869 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99976 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99664 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47161 * 60.00548 * 12 10 8 14 14 H 1.48500 * 109.47145 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47324 * 300.00220 * 12 10 8 16 16 C 1.53039 * 109.54101 * 61.36876 * 5 4 2 17 17 C 1.53194 * 109.31026 * 298.63204 * 16 5 4 18 18 N 1.46922 * 109.70417 * 239.64025 * 2 1 3 19 19 C 1.34779 * 120.63168 * 113.73364 * 18 2 1 20 20 O 1.21283 * 119.99688 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00286 * 179.97438 * 19 18 2 22 22 C 1.52997 * 109.47327 * 180.02562 * 21 19 18 23 23 O 1.42898 * 109.47179 * 180.02562 * 22 21 19 24 24 C 1.42902 * 113.99895 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.47031 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47362 * 60.00187 * 25 24 23 27 27 F 1.39895 * 109.47290 * 180.02562 * 25 24 23 28 28 F 1.39902 * 109.47074 * 300.00546 * 25 24 23 29 29 H 1.08999 * 109.47431 * 299.72442 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.72096 * 1 2 3 31 31 H 1.08994 * 109.47414 * 179.71647 * 1 2 3 32 32 H 1.08999 * 109.50112 * 185.25085 * 4 2 1 33 33 H 1.09004 * 109.49641 * 305.34327 * 4 2 1 34 34 H 0.97000 * 119.99437 * 334.99512 * 7 5 4 35 35 H 0.97004 * 119.99959 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.50219 * 178.68690 * 16 5 4 37 37 H 1.08994 * 109.49826 * 58.58410 * 16 5 4 38 38 H 1.09000 * 109.58692 * 294.85237 * 17 16 5 39 39 H 1.08992 * 109.70656 * 174.49158 * 17 16 5 40 40 H 1.09003 * 109.47460 * 300.00165 * 21 19 18 41 41 H 1.09001 * 109.47006 * 59.99429 * 21 19 18 42 42 H 1.09001 * 109.46697 * 299.99960 * 22 21 19 43 43 H 1.08993 * 109.47444 * 60.00009 * 22 21 19 44 44 H 1.08997 * 109.47331 * 300.00085 * 24 23 22 45 45 H 1.08999 * 109.46655 * 60.00663 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6444 -2.2033 1.1713 6 1 0.5597 -2.2830 1.0992 7 7 2.1052 -2.8955 2.3776 8 6 1.4696 -4.0327 2.7994 9 1 0.6284 -4.4191 2.2431 10 6 1.9065 -4.6889 3.9419 11 7 2.9314 -4.2176 4.6201 12 14 1.0391 -6.2397 4.5177 13 1 1.1200 -7.2752 3.4564 14 1 1.6930 -6.7434 5.7522 15 1 -0.3858 -5.9332 4.8027 16 6 2.2858 -2.8449 -0.0611 17 6 1.7751 -2.1412 -1.3224 18 7 2.0253 -0.6991 -1.1935 19 6 2.6963 -0.0303 -2.1521 20 8 2.8958 1.1602 -2.0344 21 6 3.1986 -0.7616 -3.3703 22 6 3.9207 0.2215 -4.2937 23 8 4.3965 -0.4719 -5.4490 24 6 5.0894 0.3600 -6.3818 25 6 5.5505 -0.4831 -7.5725 26 9 4.4376 -1.0568 -8.1965 27 9 6.2293 0.3310 -8.4854 28 9 6.4066 -1.4947 -7.1240 29 1 -0.3634 0.5095 0.8924 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 3.1294 -0.6465 1.2937 33 1 1.6054 -0.2772 2.1371 34 1 2.8605 -2.5482 2.8773 35 1 3.2365 -4.6759 5.4188 36 1 2.0202 -3.9013 -0.1012 37 1 3.3694 -2.7438 -0.0016 38 1 0.7050 -2.3179 -1.4315 39 1 2.3001 -2.5265 -2.1964 40 1 3.8902 -1.5463 -3.0635 41 1 2.3562 -1.2065 -3.9000 42 1 3.2294 1.0065 -4.6005 43 1 4.7631 0.6660 -3.7638 44 1 4.4223 1.1477 -6.7315 45 1 5.9563 0.8072 -5.8955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483905691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:21 Heat of formation + Delta-G solvation = -229.898809 kcal Electronic energy + Delta-G solvation = -29637.210130 eV Core-core repulsion = 24853.900354 eV Total energy + Delta-G solvation = -4783.309775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.47555 -48.04078 -47.92249 -40.41931 -38.68575 -37.64057 -34.59894 -33.17559 -31.94099 -31.71652 -29.68875 -29.23987 -27.33723 -24.69791 -23.96295 -23.68676 -23.03187 -21.61960 -20.27424 -19.06378 -19.01204 -18.42536 -18.03618 -17.58156 -17.06408 -16.73180 -16.33927 -15.60011 -15.36416 -14.95604 -14.83679 -14.76680 -14.39451 -14.34540 -14.11115 -14.10088 -14.06684 -13.93688 -13.65919 -13.49459 -13.38804 -12.95385 -12.85323 -12.55879 -12.09964 -11.90522 -11.83445 -11.75152 -11.60349 -11.30856 -10.96032 -10.90241 -10.79827 -10.49902 -10.32730 -10.26286 -9.86869 -9.73686 -9.66370 -8.93975 -8.57585 -7.02007 -5.81140 -3.10608 1.98739 2.55058 2.69635 3.14602 3.40235 3.40871 3.44976 3.46108 3.56437 4.01931 4.39877 4.52632 4.54073 4.54292 4.68714 4.70355 4.97754 5.12048 5.13285 5.19347 5.28427 5.37870 5.43403 5.46690 5.54403 5.59525 5.70499 5.77124 5.86293 6.01332 6.14054 6.24143 6.34022 6.34645 6.41252 6.48886 6.57700 6.84918 6.99966 7.43014 7.63977 8.10121 8.37026 9.48175 10.05526 10.39966 11.41248 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002054 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.836143 B =13627.358152 C =14610.954719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.103 3.897 18 N -0.597 5.597 19 C 0.521 3.479 20 O -0.554 6.554 21 C -0.141 4.141 22 C 0.081 3.919 23 O -0.376 6.376 24 C 0.021 3.979 25 C 0.461 3.539 26 F -0.176 7.176 27 F -0.178 7.178 28 F -0.175 7.175 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 10.742 -23.067 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.020 4.020 18 N -0.330 5.330 19 C 0.309 3.691 20 O -0.433 6.433 21 C -0.180 4.180 22 C 0.004 3.996 23 O -0.295 6.295 24 C -0.058 4.058 25 C 0.407 3.593 26 F -0.157 7.157 27 F -0.159 7.159 28 F -0.156 7.156 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.699 10.984 -22.972 25.519 hybrid contribution -0.022 -0.876 0.384 0.957 sum 1.678 10.108 -22.588 24.803 Atomic orbital electron populations 1.22134 0.94963 1.02808 1.01927 1.21198 0.94041 0.97090 0.83869 0.88674 1.22219 1.01357 0.97279 0.96396 1.20196 0.96794 0.89109 0.87063 0.93096 1.42431 1.38165 1.29246 1.26579 1.19169 1.10398 1.01098 1.06542 0.91240 1.24753 0.98488 0.99472 0.98178 1.69651 1.27620 1.41338 1.19393 0.86282 0.78815 0.83219 0.77933 1.21259 1.21715 1.21270 1.22685 1.01269 1.00598 0.94741 1.21920 1.01168 0.79046 0.99839 1.48226 1.54693 1.09693 1.20349 1.20202 0.77809 0.87205 0.83898 1.90683 1.58241 1.15265 1.79086 1.21499 1.02495 0.99738 0.94306 1.22284 0.98543 0.94125 0.84600 1.87834 1.74438 1.34966 1.32290 1.23480 1.00255 0.92805 0.89260 1.20194 0.75558 0.79265 0.84276 1.93221 1.52506 1.85757 1.84248 1.93210 1.80777 1.72836 1.69107 1.93231 1.71272 1.62214 1.88917 0.91279 0.92920 0.91613 0.91858 0.90523 0.78285 0.93421 0.90547 0.92147 0.91271 0.90266 0.87557 0.87791 0.91593 0.91480 0.88465 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.03 37.15 0.34 -1.59 16 2 C 0.14 1.91 3.20 -67.60 -0.22 1.70 16 3 H 0.10 1.37 7.01 -51.93 -0.36 1.00 16 4 C -0.13 -2.12 5.02 -26.61 -0.13 -2.25 16 5 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 6 H 0.05 0.94 6.45 -51.93 -0.33 0.60 16 7 N -0.72 -17.25 5.12 -53.38 -0.27 -17.53 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 12 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 17 C 0.10 1.22 5.93 -3.71 -0.02 1.20 16 18 N -0.60 -7.60 2.68 -165.23 -0.44 -8.04 16 19 C 0.52 6.57 7.70 -10.99 -0.08 6.49 16 20 O -0.55 -8.55 15.40 5.55 0.09 -8.46 16 21 C -0.14 -1.32 4.42 -27.89 -0.12 -1.44 16 22 C 0.08 0.71 5.23 37.16 0.19 0.90 16 23 O -0.38 -3.35 10.23 -35.23 -0.36 -3.71 16 24 C 0.02 0.13 5.90 37.16 0.22 0.35 16 25 C 0.46 3.64 3.32 37.16 0.12 3.77 16 26 F -0.18 -1.64 17.26 2.25 0.04 -1.60 16 27 F -0.18 -1.35 17.32 2.25 0.04 -1.31 16 28 F -0.17 -1.68 17.26 2.25 0.04 -1.64 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.81 5.74 -51.93 -0.30 0.51 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.45 16 40 H 0.11 0.95 7.70 -51.93 -0.40 0.55 16 41 H 0.10 0.83 7.94 -51.93 -0.41 0.41 16 42 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -31.45 376.07 -6.37 -37.82 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.59 Total: 6.19 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.27 Total: 2.66 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.01 Total: -52.41 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.27 Total: -12.17 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.12 Total: -4.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.45 -6.37 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.079 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds