Wall clock time and date at job start Tue Mar 31 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.58577 * 2 1 4 4 C 1.53196 * 109.58546 * 120.27942 * 2 1 3 5 5 C 1.53037 * 109.31040 * 65.29551 * 4 2 1 6 6 H 1.09006 * 109.46385 * 301.34352 * 5 4 2 7 7 N 1.46507 * 109.46030 * 181.38998 * 5 4 2 8 8 C 1.36936 * 120.00251 * 155.00061 * 7 5 4 9 9 H 1.07999 * 119.99869 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99976 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99664 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47161 * 60.00548 * 12 10 8 14 14 H 1.48500 * 109.47145 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47324 * 300.00220 * 12 10 8 16 16 C 1.53039 * 109.54101 * 61.36876 * 5 4 2 17 17 C 1.53194 * 109.31026 * 298.63204 * 16 5 4 18 18 N 1.46922 * 109.70417 * 239.64025 * 2 1 3 19 19 C 1.34779 * 120.63168 * 113.73364 * 18 2 1 20 20 O 1.21283 * 119.99688 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00286 * 179.97438 * 19 18 2 22 22 C 1.52997 * 109.47327 * 180.02562 * 21 19 18 23 23 O 1.42898 * 109.47179 * 180.02562 * 22 21 19 24 24 C 1.42902 * 113.99895 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.47031 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47362 * 60.00187 * 25 24 23 27 27 F 1.39895 * 109.47290 * 180.02562 * 25 24 23 28 28 F 1.39902 * 109.47074 * 300.00546 * 25 24 23 29 29 H 1.08999 * 109.47431 * 299.72442 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.72096 * 1 2 3 31 31 H 1.08994 * 109.47414 * 179.71647 * 1 2 3 32 32 H 1.08999 * 109.50112 * 185.25085 * 4 2 1 33 33 H 1.09004 * 109.49641 * 305.34327 * 4 2 1 34 34 H 0.97000 * 119.99437 * 334.99512 * 7 5 4 35 35 H 0.97004 * 119.99959 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.50219 * 178.68690 * 16 5 4 37 37 H 1.08994 * 109.49826 * 58.58410 * 16 5 4 38 38 H 1.09000 * 109.58692 * 294.85237 * 17 16 5 39 39 H 1.08992 * 109.70656 * 174.49158 * 17 16 5 40 40 H 1.09003 * 109.47460 * 300.00165 * 21 19 18 41 41 H 1.09001 * 109.47006 * 59.99429 * 21 19 18 42 42 H 1.09001 * 109.46697 * 299.99960 * 22 21 19 43 43 H 1.08993 * 109.47444 * 60.00009 * 22 21 19 44 44 H 1.08997 * 109.47331 * 300.00085 * 24 23 22 45 45 H 1.08999 * 109.46655 * 60.00663 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6444 -2.2033 1.1713 6 1 0.5597 -2.2830 1.0992 7 7 2.1052 -2.8955 2.3776 8 6 1.4696 -4.0327 2.7994 9 1 0.6284 -4.4191 2.2431 10 6 1.9065 -4.6889 3.9419 11 7 2.9314 -4.2176 4.6201 12 14 1.0391 -6.2397 4.5177 13 1 1.1200 -7.2752 3.4564 14 1 1.6930 -6.7434 5.7522 15 1 -0.3858 -5.9332 4.8027 16 6 2.2858 -2.8449 -0.0611 17 6 1.7751 -2.1412 -1.3224 18 7 2.0253 -0.6991 -1.1935 19 6 2.6963 -0.0303 -2.1521 20 8 2.8958 1.1602 -2.0344 21 6 3.1986 -0.7616 -3.3703 22 6 3.9207 0.2215 -4.2937 23 8 4.3965 -0.4719 -5.4490 24 6 5.0894 0.3600 -6.3818 25 6 5.5505 -0.4831 -7.5725 26 9 4.4376 -1.0568 -8.1965 27 9 6.2293 0.3310 -8.4854 28 9 6.4066 -1.4947 -7.1240 29 1 -0.3634 0.5095 0.8924 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 3.1294 -0.6465 1.2937 33 1 1.6054 -0.2772 2.1371 34 1 2.8605 -2.5482 2.8773 35 1 3.2365 -4.6759 5.4188 36 1 2.0202 -3.9013 -0.1012 37 1 3.3694 -2.7438 -0.0016 38 1 0.7050 -2.3179 -1.4315 39 1 2.3001 -2.5265 -2.1964 40 1 3.8902 -1.5463 -3.0635 41 1 2.3562 -1.2065 -3.9000 42 1 3.2294 1.0065 -4.6005 43 1 4.7631 0.6660 -3.7638 44 1 4.4223 1.1477 -6.7315 45 1 5.9563 0.8072 -5.8955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483905691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:21 Heat of formation + Delta-G solvation = -249.691640 kcal Electronic energy + Delta-G solvation = -29638.068411 eV Core-core repulsion = 24853.900354 eV Total energy + Delta-G solvation = -4784.168057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.11035 -48.66407 -48.59655 -41.46805 -39.43836 -38.73445 -36.22161 -34.22548 -33.57028 -32.58601 -31.02496 -30.15117 -28.58413 -26.04680 -25.13896 -24.37119 -24.26239 -22.89173 -21.40441 -19.73261 -19.64170 -19.62751 -18.93282 -18.69552 -18.42044 -17.41182 -17.21392 -16.66923 -16.54524 -16.21597 -15.65847 -15.50049 -15.46048 -15.34884 -15.04659 -15.00502 -14.88710 -14.84399 -14.77001 -14.76034 -14.34378 -14.25858 -14.00617 -13.64998 -13.16632 -12.95702 -12.83913 -12.75956 -12.66445 -12.51667 -12.41431 -12.33061 -12.20814 -12.03831 -11.92590 -11.67725 -11.09708 -10.92892 -10.91417 -10.76990 -9.66182 -8.98705 -7.91525 -5.19963 1.38637 1.49284 1.51567 1.57294 1.58089 1.90658 2.38127 2.58278 2.84013 3.00352 3.36168 3.41801 3.59341 3.77387 3.85518 4.01032 4.05241 4.07842 4.11851 4.12841 4.14771 4.27894 4.38279 4.46492 4.55893 4.62053 4.67433 4.72537 4.79971 4.83124 4.87664 5.04201 5.08283 5.10363 5.28463 5.36191 5.53763 5.57403 5.66632 5.76003 6.30071 6.42974 7.11196 7.36070 8.12680 8.34964 9.31940 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002054 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.836143 B =13627.358152 C =14610.954719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.173 3.827 6 H 0.054 0.946 7 N -0.739 5.739 8 C -0.233 4.233 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.278 1.278 16 C -0.143 4.143 17 C 0.112 3.888 18 N -0.600 5.600 19 C 0.520 3.480 20 O -0.584 6.584 21 C -0.136 4.136 22 C 0.084 3.916 23 O -0.391 6.391 24 C 0.019 3.981 25 C 0.460 3.540 26 F -0.186 7.186 27 F -0.177 7.177 28 F -0.188 7.188 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.121 0.879 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 10.773 -25.177 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.072 0.928 7 N -0.378 5.378 8 C -0.365 4.365 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.203 1.203 14 H -0.227 1.227 15 H -0.204 1.204 16 C -0.184 4.184 17 C -0.010 4.010 18 N -0.332 5.332 19 C 0.310 3.690 20 O -0.465 6.465 21 C -0.176 4.176 22 C 0.008 3.992 23 O -0.310 6.310 24 C -0.059 4.059 25 C 0.406 3.594 26 F -0.167 7.167 27 F -0.158 7.158 28 F -0.169 7.169 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.139 0.861 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.484 11.021 -25.148 27.461 hybrid contribution 0.365 -0.807 0.961 1.307 sum 0.849 10.214 -24.186 26.268 Atomic orbital electron populations 1.22074 0.93359 1.02942 1.02772 1.21048 0.95176 0.96306 0.83163 0.89401 1.22082 1.00377 0.96098 0.97718 1.20450 0.96964 0.90029 0.86015 0.92791 1.42679 1.37678 1.29087 1.28353 1.19583 1.09821 1.01199 1.05852 0.90250 1.25547 0.99737 1.02832 0.99027 1.69819 1.29673 1.42905 1.19939 0.85256 0.77835 0.79908 0.77048 1.20285 1.22743 1.20412 1.22467 1.00183 1.00213 0.95527 1.21931 1.02505 0.77988 0.98624 1.48277 1.54753 1.10021 1.20120 1.20741 0.76884 0.86939 0.84471 1.90673 1.59191 1.16802 1.79838 1.21498 1.03422 0.99624 0.93013 1.22199 0.98461 0.93945 0.84562 1.87786 1.74838 1.35869 1.32554 1.23680 1.01424 0.92481 0.88336 1.20455 0.75097 0.79083 0.84766 1.93200 1.52966 1.86017 1.84543 1.93210 1.80752 1.72649 1.69196 1.93204 1.71709 1.62950 1.89050 0.90872 0.91719 0.91721 0.93351 0.91247 0.79970 0.94251 0.91572 0.93600 0.89506 0.87113 0.86779 0.85654 0.91161 0.91922 0.86130 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.03 71.98 0.65 -2.71 16 2 C 0.15 3.80 3.20 44.97 0.14 3.94 16 3 H 0.09 2.45 7.01 -2.39 -0.02 2.44 16 4 C -0.12 -3.92 5.02 30.67 0.15 -3.76 16 5 C 0.17 6.21 2.53 45.02 0.11 6.32 16 6 H 0.05 1.92 6.45 -2.38 -0.02 1.90 16 7 N -0.74 -35.63 5.12 -322.80 -1.65 -37.29 16 8 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 10 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 11 N -0.97 -58.94 13.06 21.65 0.28 -58.65 16 12 Si 0.97 45.09 29.55 68.60 2.03 47.11 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 C -0.14 -4.32 5.66 30.67 0.17 -4.15 16 17 C 0.11 2.31 5.93 86.36 0.51 2.83 16 18 N -0.60 -13.95 2.68 -795.04 -2.13 -16.09 16 19 C 0.52 11.96 7.70 87.66 0.67 12.64 16 20 O -0.58 -17.18 15.40 -3.04 -0.05 -17.23 16 21 C -0.14 -2.14 4.42 29.85 0.13 -2.01 16 22 C 0.08 1.28 5.23 71.98 0.38 1.65 16 23 O -0.39 -6.00 10.23 -148.98 -1.52 -7.52 16 24 C 0.02 0.19 5.90 71.98 0.42 0.62 16 25 C 0.46 6.56 3.32 71.98 0.24 6.80 16 26 F -0.19 -3.20 17.26 44.97 0.78 -2.43 16 27 F -0.18 -2.43 17.32 44.97 0.78 -1.66 16 28 F -0.19 -3.40 17.26 44.97 0.78 -2.63 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.43 5.74 -2.39 -0.01 1.42 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.37 19.65 7.80 -92.71 -0.72 18.93 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.57 7.49 -2.39 -0.02 1.55 16 39 H 0.11 1.66 5.93 -2.39 -0.01 1.65 16 40 H 0.11 1.67 7.70 -2.39 -0.02 1.65 16 41 H 0.13 1.47 7.94 -2.39 -0.02 1.46 16 42 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -68.49 376.07 4.47 -64.02 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.29 Total: 25.68 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.89 Total: 6.67 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.50 Total: -112.02 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.57 Total: -24.75 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 2.33 Total: -6.71 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.49 4.47 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483905691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.672 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds