Wall clock time and date at job start Tue Mar 31 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87480 * 2 1 4 4 C 1.54325 * 109.88119 * 121.01527 * 2 1 3 5 5 C 1.55163 * 102.94109 * 97.37852 * 4 2 1 6 6 H 1.09006 * 111.00202 * 277.42795 * 5 4 2 7 7 N 1.46900 * 111.00819 * 153.57511 * 5 4 2 8 8 C 1.46896 * 111.00052 * 154.99674 * 7 5 4 9 9 C 1.50703 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.39866 * 126.04045 * 90.02989 * 9 8 7 11 11 N 1.30830 * 108.20590 * 179.97438 * 10 9 8 12 12 N 1.40089 * 108.20659 * 359.97438 * 11 10 9 13 13 C 1.46494 * 126.03800 * 180.02562 * 12 11 10 14 14 C 1.34952 * 107.92011 * 359.76310 * 12 11 10 15 15 C 1.54910 * 101.58002 * 35.49973 * 5 4 2 16 16 N 1.47018 * 109.88094 * 238.98427 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.32438 * 16 2 1 18 18 O 1.21283 * 120.00001 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99986 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47206 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00294 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00011 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00080 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00045 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47342 * 89.99148 * 25 23 21 27 27 H 1.48504 * 109.47138 * 209.99718 * 25 23 21 28 28 H 1.48503 * 109.47055 * 329.99227 * 25 23 21 29 29 H 1.09005 * 109.46795 * 299.30113 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.29385 * 1 2 3 31 31 H 1.08995 * 109.47480 * 179.29901 * 1 2 3 32 32 H 1.09000 * 110.72188 * 215.73439 * 4 2 1 33 33 H 1.09002 * 110.72265 * 339.01635 * 4 2 1 34 34 H 1.00906 * 110.99657 * 31.04453 * 7 5 4 35 35 H 1.08996 * 109.47469 * 300.00375 * 8 7 5 36 36 H 1.09003 * 109.46744 * 60.00321 * 8 7 5 37 37 H 1.08004 * 125.89349 * 359.97438 * 10 9 8 38 38 H 1.08998 * 109.47311 * 89.97982 * 13 12 11 39 39 H 1.09004 * 109.46701 * 209.97719 * 13 12 11 40 40 H 1.08997 * 109.47410 * 329.97541 * 13 12 11 41 41 H 1.07995 * 126.12494 * 180.24111 * 14 12 11 42 42 H 1.09001 * 110.36566 * 81.83216 * 15 5 4 43 43 H 1.09004 * 110.36967 * 204.04279 * 15 5 4 44 44 H 1.08999 * 109.47418 * 300.00317 * 19 17 16 45 45 H 1.09004 * 109.47129 * 59.99941 * 19 17 16 46 46 H 0.97002 * 120.00374 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3556 -2.1674 0.6945 6 1 1.4502 -2.7735 0.6616 7 7 3.4007 -2.8284 1.4875 8 6 3.2881 -4.2900 1.3927 9 6 4.3738 -4.9319 2.2176 10 6 4.2802 -5.2884 3.5668 11 7 5.4204 -5.8173 3.9299 12 7 6.2769 -5.8146 2.8214 13 6 7.6523 -6.3182 2.7937 14 6 5.6091 -5.2714 1.7820 15 6 2.8617 -1.8473 -0.7342 16 7 2.0299 -0.7124 -1.1849 17 6 1.7716 -0.3836 -2.4662 18 8 1.0718 0.5746 -2.7171 19 6 2.3523 -1.2068 -3.5871 20 16 1.8281 -0.5171 -5.1763 21 6 2.6257 -1.6400 -6.2752 22 1 3.2202 -2.4509 -5.8810 23 6 2.4908 -1.4818 -7.6475 24 7 1.7667 -0.4932 -8.1280 25 14 3.3358 -2.6726 -8.8125 26 1 2.4259 -3.8093 -9.1043 27 1 3.6739 -1.9718 -10.0774 28 1 4.5796 -3.1834 -8.1820 29 1 -0.3633 0.5030 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3634 -1.0275 -0.0126 32 1 2.9642 -0.2794 1.6202 33 1 1.2908 -0.7886 2.0202 34 1 3.3708 -2.5251 2.4494 35 1 2.3140 -4.6045 1.7670 36 1 3.3934 -4.5957 0.3517 37 1 3.4158 -5.1509 4.1996 38 1 7.6476 -7.3727 2.5177 39 1 8.2311 -5.7539 2.0625 40 1 8.1015 -6.2028 3.7800 41 1 5.9930 -5.1302 0.7825 42 1 3.9134 -1.5620 -0.7090 43 1 2.7182 -2.7068 -1.3890 44 1 3.4404 -1.1891 -3.5249 45 1 2.0003 -2.2350 -3.5029 46 1 1.6721 -0.3828 -9.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507298776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:13 Heat of formation + Delta-G solvation = 25.236921 kcal Electronic energy + Delta-G solvation = -26145.267680 eV Core-core repulsion = 22389.923783 eV Total energy + Delta-G solvation = -3755.343898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05503 -41.20849 -38.89369 -36.34867 -34.58286 -34.03067 -33.31901 -31.97676 -30.31928 -29.81888 -27.79222 -27.64763 -26.82010 -25.17774 -23.26560 -21.97201 -21.62132 -21.08984 -20.35438 -19.53207 -18.05646 -17.69626 -17.20141 -16.87981 -16.63750 -16.33657 -16.10828 -15.98844 -15.68146 -15.34564 -14.83108 -14.77946 -14.52994 -14.27286 -14.14068 -13.96095 -13.78752 -13.64022 -13.38855 -13.27458 -13.16132 -13.04797 -12.92944 -12.87083 -12.74129 -12.57577 -12.03099 -11.99587 -11.71954 -11.54699 -11.41405 -11.13792 -10.85024 -10.32646 -10.27600 -9.69707 -9.45724 -9.19393 -8.67294 -8.34043 -6.12620 1.01500 1.24938 1.43142 1.45608 1.56713 1.60191 1.73631 1.83795 2.11052 2.27967 2.99976 3.17372 3.38473 3.52765 3.64879 3.72778 3.93437 4.06414 4.07995 4.23390 4.28120 4.34401 4.39472 4.41742 4.45328 4.46225 4.51109 4.57589 4.68100 4.71324 4.74996 4.88227 4.91811 4.94536 4.96706 5.06359 5.13550 5.29545 5.33306 5.41973 5.53558 5.75752 6.12775 6.18682 6.20271 6.43440 6.56187 6.79364 7.06888 7.16817 8.75267 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.002505 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.656518 B =11173.233157 C =13691.438445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.063 0.937 4 C -0.113 4.113 5 C 0.087 3.913 6 H 0.070 0.930 7 N -0.673 5.673 8 C 0.143 3.857 9 C -0.247 4.247 10 C 0.048 3.952 11 N -0.341 5.341 12 N -0.385 5.385 13 C 0.093 3.907 14 C 0.073 3.927 15 C 0.105 3.895 16 N -0.613 5.613 17 C 0.547 3.453 18 O -0.562 6.562 19 C -0.119 4.119 20 S -0.150 6.150 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.354 0.646 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.198 0.802 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.194 0.806 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 -11.888 27.065 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.024 4.024 6 H 0.088 0.912 7 N -0.306 5.306 8 C 0.013 3.987 9 C -0.259 4.259 10 C -0.137 4.137 11 N -0.163 5.163 12 N -0.167 5.167 13 C -0.047 4.047 14 C -0.075 4.075 15 C -0.018 4.018 16 N -0.348 5.348 17 C 0.335 3.665 18 O -0.441 6.441 19 C -0.270 4.270 20 S 0.077 5.923 21 C -0.692 4.692 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.181 1.181 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.215 0.785 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.211 0.789 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.630 -10.915 26.966 30.345 hybrid contribution -0.123 -1.158 -0.971 1.516 sum 8.507 -12.073 25.996 29.898 Atomic orbital electron populations 1.22113 0.94842 1.02257 1.02465 1.21676 0.94766 0.96370 0.84570 0.91900 1.22864 1.03086 0.93801 0.95369 1.22476 0.93063 0.94819 0.92046 0.91184 1.60310 1.47912 1.05855 1.16514 1.20138 0.94076 0.85836 0.98621 1.20052 0.97429 1.13256 0.95200 1.24168 0.96601 0.97295 0.95682 1.77292 1.02867 1.25697 1.10416 1.48798 1.13172 1.47612 1.07110 1.22133 0.76246 1.00895 1.05441 1.22824 0.93038 0.96697 0.94941 1.22565 0.95170 0.87942 0.96134 1.48555 1.50912 1.31506 1.03871 1.19706 0.79908 0.84112 0.82775 1.90672 1.39626 1.30196 1.83597 1.23302 1.04430 1.02849 0.96432 1.85569 1.68320 1.42630 0.95776 1.23178 1.36401 1.16020 0.93640 0.89965 1.26146 0.95837 0.97888 0.99329 1.70186 1.38998 1.31432 1.14187 0.84940 0.78692 0.77491 0.76768 1.19254 1.20310 1.18082 0.89183 0.94738 0.92208 0.88714 0.87390 0.82530 0.93367 0.90576 0.78490 0.89846 0.87197 0.89299 0.78890 0.90085 0.90684 0.87942 0.87785 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.05 71.98 0.65 -3.04 16 2 C 0.13 2.93 3.49 45.34 0.16 3.09 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.11 -1.47 5.90 31.79 0.19 -1.28 16 5 C 0.09 1.19 3.38 46.31 0.16 1.35 16 6 H 0.07 0.95 7.83 -2.38 -0.02 0.93 16 7 N -0.67 -7.70 6.40 -488.39 -3.13 -10.82 16 8 C 0.14 1.63 6.03 85.56 0.52 2.14 16 9 C -0.25 -3.38 5.61 -20.14 -0.11 -3.49 16 10 C 0.05 0.72 11.96 85.24 1.02 1.74 16 11 N -0.34 -6.49 12.58 -57.03 -0.72 -7.21 16 12 N -0.38 -5.74 4.01 -369.58 -1.48 -7.22 16 13 C 0.09 0.67 11.47 127.77 1.47 2.14 16 14 C 0.07 0.97 11.40 83.54 0.95 1.92 16 15 C 0.10 2.14 6.41 86.79 0.56 2.69 16 16 N -0.61 -17.37 3.09 -787.23 -2.43 -19.81 16 17 C 0.55 21.64 7.65 87.66 0.67 22.31 16 18 O -0.56 -27.19 14.75 -3.04 -0.04 -27.23 16 19 C -0.12 -4.97 5.18 71.24 0.37 -4.60 16 20 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 21 C -0.54 -31.39 9.50 67.95 0.65 -30.74 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 25 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.03 1.10 6.74 -2.39 -0.02 1.08 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 0.91 7.83 -2.39 -0.02 0.90 16 34 H 0.35 3.31 8.43 -89.69 -0.76 2.55 16 35 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.53 7.50 -2.38 -0.02 1.51 16 44 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 45 H 0.10 3.95 7.86 -2.39 -0.02 3.94 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.43 395.95 1.27 -81.16 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.22 Total: 15.84 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 7.70 Total: -4.58 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -7.47 Total: -101.17 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.43 1.27 -81.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507298776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.401 kcal (2) G-P(sol) polarization free energy of solvation -82.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds