Wall clock time and date at job start Tue Mar 31 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.87277 * 2 1 4 4 C 1.54324 * 109.87945 * 121.17312 * 2 1 3 5 5 C 1.55157 * 102.93850 * 141.61247 * 4 2 1 6 6 H 1.09004 * 111.03812 * 82.59183 * 5 4 2 7 7 N 1.46901 * 111.00117 * 206.42252 * 5 4 2 8 8 C 1.46905 * 110.99870 * 198.64991 * 7 5 4 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 C 1.39865 * 126.04031 * 269.69142 * 9 8 7 11 11 N 1.30839 * 108.20081 * 179.81620 * 10 9 8 12 12 N 1.40084 * 108.20952 * 0.44153 * 11 10 9 13 13 C 1.46492 * 126.04158 * 179.69490 * 12 11 10 14 14 C 1.34952 * 107.91705 * 359.71694 * 12 11 10 15 15 C 1.54909 * 101.58450 * 324.49925 * 5 4 2 16 16 N 1.47017 * 109.88466 * 238.98516 * 2 1 3 17 17 C 1.34775 * 125.65117 * 61.67762 * 16 2 1 18 18 O 1.21280 * 120.00127 * 359.97438 * 17 16 2 19 19 C 1.50695 * 120.00181 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.47286 * 180.02562 * 19 17 16 21 21 C 1.76203 * 100.00314 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99539 * 359.97438 * 21 20 19 23 23 C 1.38793 * 120.00075 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00479 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47477 * 59.99507 * 25 23 21 27 27 H 1.48502 * 109.47294 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46944 * 299.99338 * 25 23 21 29 29 H 1.09000 * 109.47031 * 179.56151 * 1 2 3 30 30 H 1.08994 * 109.47294 * 299.56720 * 1 2 3 31 31 H 1.09008 * 109.46526 * 59.56159 * 1 2 3 32 32 H 1.08998 * 110.72208 * 23.25090 * 4 2 1 33 33 H 1.09000 * 110.72129 * 259.97615 * 4 2 1 34 34 H 1.00901 * 111.00067 * 322.60166 * 7 5 4 35 35 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 36 36 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 37 37 H 1.07995 * 125.90143 * 0.02562 * 10 9 8 38 38 H 1.09001 * 109.47614 * 270.02341 * 13 12 11 39 39 H 1.08998 * 109.47524 * 30.02382 * 13 12 11 40 40 H 1.08998 * 109.47024 * 150.02520 * 13 12 11 41 41 H 1.08005 * 126.12242 * 180.02562 * 14 12 11 42 42 H 1.08992 * 110.36779 * 155.85360 * 15 5 4 43 43 H 1.09005 * 110.36313 * 278.06312 * 15 5 4 44 44 H 1.09005 * 109.47215 * 300.00010 * 19 17 16 45 45 H 1.09004 * 109.47559 * 59.99597 * 19 17 16 46 46 H 0.96994 * 120.00334 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2876 -1.5151 0.6903 6 1 4.1658 -0.8702 0.6593 7 7 3.5538 -2.7248 1.4801 8 6 4.9266 -3.2019 1.2657 9 6 5.1620 -4.4415 2.0897 10 6 5.6533 -4.4785 3.3987 11 7 5.7156 -5.7296 3.7767 12 7 5.2748 -6.5301 2.7150 13 6 5.1915 -7.9926 2.7150 14 6 4.9410 -5.7158 1.6918 15 6 2.8146 -1.8783 -0.7394 16 7 2.0301 -0.7124 -1.1849 17 6 1.8087 -0.3578 -2.4662 18 8 1.1453 0.6259 -2.7172 19 6 2.3854 -1.1837 -3.5870 20 16 1.9161 -0.4556 -5.1762 21 6 2.6996 -1.5884 -6.2751 22 1 3.2596 -2.4235 -5.8808 23 6 2.5979 -1.4070 -7.6474 24 7 1.9158 -0.3890 -8.1280 25 14 3.4279 -2.6084 -8.8123 26 1 2.8824 -3.9714 -8.5892 27 1 3.1698 -2.1959 -10.2154 28 1 4.8912 -2.6131 -8.5586 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 1.3051 -1.4482 1.6162 33 1 2.3528 -0.0487 2.0201 34 1 3.3761 -2.5633 2.4601 35 1 5.0697 -3.4348 0.2106 36 1 5.6317 -2.4266 1.5655 37 1 5.9299 -3.6221 3.9958 38 1 6.1327 -8.4103 2.3575 39 1 4.9990 -8.3456 3.7282 40 1 4.3808 -8.3104 2.0594 41 1 4.5645 -6.0258 0.7282 42 1 3.6717 -2.0319 -1.3949 43 1 2.1903 -2.7716 -0.7169 44 1 3.4720 -1.2020 -3.5028 45 1 1.9990 -2.2011 -3.5247 46 1 1.8445 -0.2624 -9.0870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507298778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:19 Heat of formation + Delta-G solvation = 50.372910 kcal Electronic energy + Delta-G solvation = -26147.828180 eV Core-core repulsion = 22393.574261 eV Total energy + Delta-G solvation = -3754.253919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49963 -40.02310 -37.68279 -35.55434 -33.49248 -32.41400 -32.11018 -31.32120 -29.32068 -28.63723 -27.27930 -25.87077 -25.46199 -24.56398 -21.96029 -21.42554 -20.98617 -20.49752 -18.87305 -17.63679 -17.19893 -16.86953 -16.37969 -15.81783 -15.36876 -15.01632 -14.80842 -14.78655 -14.69054 -14.27219 -14.05425 -13.73868 -13.49526 -13.28667 -13.17505 -12.90295 -12.89020 -12.64866 -12.48889 -12.35172 -12.31928 -11.88235 -11.74414 -11.28878 -11.06551 -11.02809 -11.00234 -10.86401 -10.75657 -10.74334 -9.80447 -9.74988 -9.30628 -9.04426 -8.90153 -8.64541 -8.41875 -8.21012 -6.47921 -6.19804 -3.90220 1.57234 2.18494 2.41420 2.94487 3.12592 3.24144 3.26547 3.29886 3.61592 4.01587 4.14696 4.21958 4.29730 4.49703 4.54258 4.72463 4.75509 4.83504 4.96689 4.98945 5.04432 5.09144 5.13553 5.15082 5.27068 5.39845 5.40622 5.47132 5.51858 5.62577 5.66127 5.68715 5.75180 5.83325 5.87370 5.95084 6.12795 6.17556 6.29504 6.33410 6.59639 6.65594 6.76663 7.07114 7.35968 7.60697 7.76111 8.36670 8.63172 9.25182 10.87582 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.002530 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.952512 B =11062.723457 C =13523.263231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.071 3.929 6 H 0.062 0.938 7 N -0.674 5.674 8 C 0.137 3.863 9 C -0.238 4.238 10 C 0.053 3.947 11 N -0.302 5.302 12 N -0.378 5.378 13 C 0.101 3.899 14 C 0.079 3.921 15 C 0.113 3.887 16 N -0.622 5.622 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.146 4.146 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.180 0.820 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.176 0.824 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -10.550 25.260 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.039 4.039 6 H 0.080 0.920 7 N -0.306 5.306 8 C 0.007 3.993 9 C -0.250 4.250 10 C -0.133 4.133 11 N -0.123 5.123 12 N -0.160 5.160 13 C -0.040 4.040 14 C -0.068 4.068 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.338 3.662 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.197 0.803 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.193 0.807 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.973 -10.367 25.104 27.612 hybrid contribution 1.638 -0.870 -0.630 1.959 sum 6.611 -11.237 24.474 27.730 Atomic orbital electron populations 1.22139 0.94734 1.02315 1.02876 1.21416 0.94832 0.96194 0.84059 0.90873 1.22879 0.97529 0.99218 0.96882 1.22668 0.97151 0.90235 0.93872 0.92011 1.60418 1.25255 1.31785 1.13147 1.20180 0.88255 0.91988 0.98880 1.19913 1.13825 0.94542 0.96732 1.23788 0.99342 0.95022 0.95198 1.77352 1.22047 1.02509 1.10363 1.48488 1.50398 1.06847 1.10273 1.21868 1.03189 0.74292 1.04683 1.22409 0.99510 0.90507 0.94403 1.22207 0.95581 0.89226 0.94065 1.48544 1.53825 1.28778 1.04863 1.19974 0.79815 0.84980 0.81403 1.90689 1.38695 1.26932 1.82591 1.23510 1.03550 1.02677 0.99942 1.85386 1.69746 1.37622 0.90659 1.22814 1.38307 1.14060 0.93096 0.91024 1.24985 0.95270 0.95975 0.97343 1.70006 1.38525 1.28034 1.13739 0.86235 0.79632 0.80561 0.79123 1.19948 1.20829 1.19950 0.92522 0.92126 0.90816 0.89465 0.90335 0.83580 0.90192 0.94221 0.80327 0.90735 0.89346 0.89302 0.80731 0.90839 0.90485 0.89459 0.89361 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.10 37.16 0.34 -1.67 16 2 C 0.14 1.69 3.46 -66.95 -0.23 1.45 16 3 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 4 C -0.13 -1.06 5.95 -24.90 -0.15 -1.20 16 5 C 0.07 0.61 3.32 -65.56 -0.22 0.39 16 6 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 7 N -0.67 -5.01 6.36 -105.72 -0.67 -5.68 16 8 C 0.14 0.99 6.04 -4.97 -0.03 0.96 16 9 C -0.24 -1.91 5.61 -105.06 -0.59 -2.50 16 10 C 0.05 0.45 11.96 -17.37 -0.21 0.24 16 11 N -0.30 -3.05 12.58 30.62 0.39 -2.67 16 12 N -0.38 -3.12 4.01 -68.17 -0.27 -3.40 16 13 C 0.10 0.45 11.47 59.84 0.69 1.13 16 14 C 0.08 0.61 11.40 -17.22 -0.20 0.42 16 15 C 0.11 1.29 6.34 -2.53 -0.02 1.27 16 16 N -0.62 -9.12 3.06 -163.02 -0.50 -9.62 16 17 C 0.55 10.73 7.66 -10.99 -0.08 10.65 16 18 O -0.51 -11.93 14.90 5.56 0.08 -11.85 16 19 C -0.15 -3.04 5.16 36.00 0.19 -2.85 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 25 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.15 6.88 -51.92 -0.36 0.80 16 32 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.35 2.26 8.52 -39.29 -0.33 1.93 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 37 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.18 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.07 0.83 7.47 -51.93 -0.39 0.44 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.69 7.85 -51.91 -0.41 1.28 16 45 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -36.32 396.29 -9.16 -45.48 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.34 Total: -0.52 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.31 Total: -4.68 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.33 Total: -46.88 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.32 -9.16 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507298778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.852 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds