Wall clock time and date at job start Tue Mar 31 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 6 6 H 1.08998 * 111.00676 * 277.23890 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 C 1.39865 * 126.04103 * 90.02388 * 9 8 7 11 11 N 1.30839 * 108.20504 * 179.97438 * 10 9 8 12 12 N 1.40085 * 108.20166 * 359.97438 * 11 10 9 13 13 C 1.46496 * 126.03681 * 179.97438 * 12 11 10 14 14 C 1.34946 * 107.92478 * 359.75959 * 12 11 10 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 17 17 C 1.34780 * 125.64445 * 298.39549 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47361 * 89.99587 * 25 23 21 27 27 H 1.48497 * 109.47059 * 210.00081 * 25 23 21 28 28 H 1.48507 * 109.47001 * 329.99878 * 25 23 21 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 1.09000 * 110.85610 * 100.20042 * 4 2 1 33 33 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 34 34 H 1.00909 * 110.99970 * 285.30619 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08004 * 125.89845 * 359.95786 * 10 9 8 38 38 H 1.09004 * 109.47216 * 89.97797 * 13 12 11 39 39 H 1.09001 * 109.47480 * 209.97819 * 13 12 11 40 40 H 1.09005 * 109.47279 * 329.97978 * 13 12 11 41 41 H 1.08006 * 126.12791 * 180.23856 * 14 12 11 42 42 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 43 43 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 44 44 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 45 45 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 46 46 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1669 -0.8769 -0.6578 7 7 3.5482 -2.7276 -1.4833 8 6 4.9186 -3.2113 -1.2682 9 6 5.1499 -4.4496 -2.0954 10 6 5.6377 -4.4846 -3.4057 11 7 5.7013 -5.7352 -3.7850 12 7 5.2557 -6.5367 -2.7260 13 6 5.1656 -7.9989 -2.7306 14 6 4.9287 -5.7244 -1.6993 15 6 2.8098 -1.8825 0.7370 16 7 2.0300 -0.7141 1.1839 17 6 1.8073 -0.3619 2.4657 18 8 1.1474 0.6239 2.7180 19 6 2.3783 -1.1932 3.5856 20 16 1.9086 -0.4674 5.1758 21 6 2.6864 -1.6055 6.2732 22 1 3.2437 -2.4419 5.8778 23 6 2.5820 -1.4277 7.6458 24 7 1.9024 -0.4086 8.1276 25 14 3.4060 -2.6346 8.8093 26 1 4.7864 -2.1736 9.1047 27 1 2.6293 -2.7132 10.0725 28 1 3.4574 -3.9766 8.1754 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0452 -2.0192 33 1 1.3066 -1.4406 -1.6225 34 1 2.8735 -3.4488 -1.2760 35 1 5.6274 -2.4385 -1.5655 36 1 5.0592 -3.4470 -0.2133 37 1 5.9140 -3.6273 -4.0018 38 1 6.1046 -8.4220 -2.3734 39 1 4.3527 -8.3149 -2.0768 40 1 4.9725 -8.3479 -3.7451 41 1 4.5546 -6.0357 -0.7351 42 1 3.6655 -2.0412 1.3934 43 1 2.1805 -2.7722 0.7135 44 1 1.9877 -2.2087 3.5198 45 1 3.4650 -1.2158 3.5037 46 1 1.8298 -0.2841 9.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507298779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:22 Heat of formation + Delta-G solvation = 49.644449 kcal Electronic energy + Delta-G solvation = -26165.109975 eV Core-core repulsion = 22410.824468 eV Total energy + Delta-G solvation = -3754.285508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50518 -40.08967 -37.74081 -35.54547 -33.50882 -32.44807 -32.12582 -31.35142 -29.27323 -28.66953 -27.31165 -25.82129 -25.49663 -24.50863 -22.11482 -21.44229 -21.09677 -20.49133 -18.93724 -17.67109 -17.39842 -16.82681 -16.28624 -15.76210 -15.55571 -14.83615 -14.80963 -14.75141 -14.57745 -14.40049 -14.20530 -13.75249 -13.34683 -13.28031 -13.07632 -13.03776 -12.90369 -12.76871 -12.62509 -12.42539 -12.11312 -11.83539 -11.80998 -11.58899 -11.08384 -11.05777 -10.99606 -10.92216 -10.77996 -10.71864 -9.83329 -9.75027 -9.38591 -9.08448 -8.90376 -8.62011 -8.45265 -8.24598 -6.51719 -6.23301 -3.93879 1.54305 2.18118 2.44030 2.90176 3.07727 3.20343 3.23895 3.28234 3.57960 3.97522 4.16603 4.18447 4.39540 4.47983 4.49714 4.70705 4.74381 4.79527 4.89549 4.97266 5.03155 5.08431 5.11738 5.11861 5.15852 5.37248 5.45326 5.46692 5.48349 5.57045 5.62034 5.67749 5.76498 5.81256 5.84039 5.88361 6.10922 6.12704 6.31530 6.32146 6.56911 6.62909 6.73615 7.05586 7.37349 7.57312 7.70266 8.33151 8.58574 9.21789 10.84109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.002532 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.407058 B =11056.364941 C =13510.875410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.114 4.114 5 C 0.076 3.924 6 H 0.097 0.903 7 N -0.670 5.670 8 C 0.135 3.865 9 C -0.234 4.234 10 C 0.068 3.932 11 N -0.303 5.303 12 N -0.378 5.378 13 C 0.101 3.899 14 C 0.061 3.939 15 C 0.073 3.927 16 N -0.619 5.619 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.343 0.657 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.183 0.817 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.172 0.828 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -11.279 -24.073 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.035 4.035 6 H 0.115 0.885 7 N -0.300 5.300 8 C 0.005 3.995 9 C -0.246 4.246 10 C -0.119 4.119 11 N -0.124 5.124 12 N -0.159 5.159 13 C -0.040 4.040 14 C -0.086 4.086 15 C -0.052 4.052 16 N -0.357 5.357 17 C 0.337 3.663 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.200 0.800 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.189 0.811 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.064 -10.329 -24.970 27.493 hybrid contribution 1.002 -1.951 2.112 3.045 sum 6.067 -12.280 -22.858 26.647 Atomic orbital electron populations 1.22131 0.94802 1.02151 1.02933 1.21534 0.94741 0.96485 0.84160 0.90740 1.22708 0.97034 0.99199 0.96315 1.22800 0.98695 0.92641 0.89407 0.88529 1.60625 1.04022 1.07607 1.57762 1.20187 0.90313 0.92995 0.95963 1.19939 1.13757 0.93911 0.97008 1.23786 0.98372 0.94788 0.94925 1.77384 1.21997 1.02594 1.10394 1.48463 1.50423 1.06844 1.10212 1.21863 1.03100 0.74357 1.04701 1.22402 1.01072 0.90775 0.94393 1.23043 0.95672 0.89472 0.97058 1.48495 1.53989 1.28289 1.04950 1.19997 0.79760 0.85105 0.81439 1.90694 1.38635 1.26804 1.82529 1.23510 1.03546 1.02531 1.00121 1.85405 1.69936 1.37398 0.90566 1.22846 1.38565 1.13816 0.93102 0.91028 1.24992 0.95224 0.96023 0.97351 1.70018 1.38486 1.28052 1.13653 0.86171 0.79199 0.80519 0.79619 1.20255 1.20731 1.19736 0.90892 0.91980 0.92730 0.89821 0.90168 0.83830 0.89985 0.94237 0.80008 0.90760 0.89413 0.89291 0.81061 0.90602 0.91719 0.89556 0.89505 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.11 37.16 0.34 -1.65 16 2 C 0.13 1.61 3.46 -66.95 -0.23 1.38 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -0.98 6.18 -24.90 -0.15 -1.14 16 5 C 0.08 0.63 3.32 -65.56 -0.22 0.41 16 6 H 0.10 0.81 7.92 -51.93 -0.41 0.40 16 7 N -0.67 -4.91 6.36 -105.72 -0.67 -5.58 16 8 C 0.13 0.95 6.04 -4.97 -0.03 0.92 16 9 C -0.23 -1.86 5.61 -105.06 -0.59 -2.45 16 10 C 0.07 0.60 11.96 -17.37 -0.21 0.39 16 11 N -0.30 -3.12 12.58 30.62 0.39 -2.73 16 12 N -0.38 -3.06 4.01 -68.16 -0.27 -3.34 16 13 C 0.10 0.43 11.47 59.84 0.69 1.12 16 14 C 0.06 0.44 11.40 -17.23 -0.20 0.25 16 15 C 0.07 0.77 6.27 -2.53 -0.02 0.75 16 16 N -0.62 -8.83 3.06 -163.01 -0.50 -9.33 16 17 C 0.55 10.56 7.66 -10.98 -0.08 10.48 16 18 O -0.51 -11.80 14.91 5.56 0.08 -11.71 16 19 C -0.15 -3.01 5.16 36.01 0.19 -2.82 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 22 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 25 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.07 1.13 6.89 -51.93 -0.36 0.78 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 34 H 0.34 2.42 8.30 -39.29 -0.33 2.10 16 35 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 43 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.66 7.85 -51.91 -0.41 1.25 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -36.22 395.92 -9.15 -45.37 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.32 Total: -0.44 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.32 Total: -5.25 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.33 Total: -46.34 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.22 -9.15 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507298779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.018 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds