Wall clock time and date at job start Tue Mar 31 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 6 6 H 1.08998 * 111.00676 * 277.23890 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 C 1.39865 * 126.04103 * 90.02388 * 9 8 7 11 11 N 1.30839 * 108.20504 * 179.97438 * 10 9 8 12 12 N 1.40085 * 108.20166 * 359.97438 * 11 10 9 13 13 C 1.46496 * 126.03681 * 179.97438 * 12 11 10 14 14 C 1.34946 * 107.92478 * 359.75959 * 12 11 10 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 17 17 C 1.34780 * 125.64445 * 298.39549 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47361 * 89.99587 * 25 23 21 27 27 H 1.48497 * 109.47059 * 210.00081 * 25 23 21 28 28 H 1.48507 * 109.47001 * 329.99878 * 25 23 21 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 1.09000 * 110.85610 * 100.20042 * 4 2 1 33 33 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 34 34 H 1.00909 * 110.99970 * 285.30619 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08004 * 125.89845 * 359.95786 * 10 9 8 38 38 H 1.09004 * 109.47216 * 89.97797 * 13 12 11 39 39 H 1.09001 * 109.47480 * 209.97819 * 13 12 11 40 40 H 1.09005 * 109.47279 * 329.97978 * 13 12 11 41 41 H 1.08006 * 126.12791 * 180.23856 * 14 12 11 42 42 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 43 43 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 44 44 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 45 45 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 46 46 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1669 -0.8769 -0.6578 7 7 3.5482 -2.7276 -1.4833 8 6 4.9186 -3.2113 -1.2682 9 6 5.1499 -4.4496 -2.0954 10 6 5.6377 -4.4846 -3.4057 11 7 5.7013 -5.7352 -3.7850 12 7 5.2557 -6.5367 -2.7260 13 6 5.1656 -7.9989 -2.7306 14 6 4.9287 -5.7244 -1.6993 15 6 2.8098 -1.8825 0.7370 16 7 2.0300 -0.7141 1.1839 17 6 1.8073 -0.3619 2.4657 18 8 1.1474 0.6239 2.7180 19 6 2.3783 -1.1932 3.5856 20 16 1.9086 -0.4674 5.1758 21 6 2.6864 -1.6055 6.2732 22 1 3.2437 -2.4419 5.8778 23 6 2.5820 -1.4277 7.6458 24 7 1.9024 -0.4086 8.1276 25 14 3.4060 -2.6346 8.8093 26 1 4.7864 -2.1736 9.1047 27 1 2.6293 -2.7132 10.0725 28 1 3.4574 -3.9766 8.1754 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0452 -2.0192 33 1 1.3066 -1.4406 -1.6225 34 1 2.8735 -3.4488 -1.2760 35 1 5.6274 -2.4385 -1.5655 36 1 5.0592 -3.4470 -0.2133 37 1 5.9140 -3.6273 -4.0018 38 1 6.1046 -8.4220 -2.3734 39 1 4.3527 -8.3149 -2.0768 40 1 4.9725 -8.3479 -3.7451 41 1 4.5546 -6.0357 -0.7351 42 1 3.6655 -2.0412 1.3934 43 1 2.1805 -2.7722 0.7135 44 1 1.9877 -2.2087 3.5198 45 1 3.4650 -1.2158 3.5037 46 1 1.8298 -0.2841 9.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507298779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:21 Heat of formation + Delta-G solvation = 24.159481 kcal Electronic energy + Delta-G solvation = -26166.215086 eV Core-core repulsion = 22410.824468 eV Total energy + Delta-G solvation = -3755.390619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05809 -41.23938 -38.92943 -36.34626 -34.59577 -34.04195 -33.32417 -32.04363 -30.30648 -29.81388 -27.82352 -27.66639 -26.73404 -25.11495 -23.18421 -22.03943 -21.80555 -21.07078 -20.33694 -19.48400 -18.26173 -17.74863 -17.37340 -16.89063 -16.56964 -16.36138 -16.12194 -15.82418 -15.53108 -15.18463 -15.08703 -14.81188 -14.51154 -14.31835 -14.07867 -13.90799 -13.70232 -13.54293 -13.42959 -13.34548 -13.18553 -13.12095 -12.99328 -12.89232 -12.59697 -12.47723 -12.32961 -11.89144 -11.73814 -11.62735 -11.44004 -11.15089 -10.89539 -10.32803 -10.29010 -9.72853 -9.46617 -9.15608 -8.68944 -8.35345 -6.14112 1.00319 1.23502 1.42170 1.44662 1.55423 1.58329 1.74353 1.84909 2.09373 2.26575 2.98790 3.17339 3.34092 3.59060 3.65759 3.79785 3.94298 4.02998 4.06460 4.17395 4.23193 4.31573 4.34281 4.38159 4.41950 4.45136 4.45999 4.58874 4.66919 4.71244 4.73689 4.80044 4.95151 4.96315 5.02951 5.09948 5.19514 5.26847 5.34044 5.40366 5.51902 5.75764 6.09824 6.18692 6.19181 6.41129 6.51564 6.80169 7.05571 7.14991 8.73930 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.002532 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.407058 B =11056.364941 C =13510.875410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.065 0.935 4 C -0.100 4.100 5 C 0.090 3.910 6 H 0.100 0.900 7 N -0.664 5.664 8 C 0.140 3.860 9 C -0.245 4.245 10 C 0.057 3.943 11 N -0.343 5.343 12 N -0.384 5.384 13 C 0.093 3.907 14 C 0.062 3.938 15 C 0.066 3.934 16 N -0.610 5.610 17 C 0.545 3.455 18 O -0.562 6.562 19 C -0.119 4.119 20 S -0.151 6.151 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.347 0.653 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.194 0.806 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.199 0.801 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -13.720 -25.289 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.138 4.138 5 C -0.021 4.021 6 H 0.118 0.882 7 N -0.295 5.295 8 C 0.011 3.989 9 C -0.257 4.257 10 C -0.129 4.129 11 N -0.165 5.165 12 N -0.166 5.166 13 C -0.047 4.047 14 C -0.086 4.086 15 C -0.059 4.059 16 N -0.345 5.345 17 C 0.333 3.667 18 O -0.441 6.441 19 C -0.270 4.270 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.180 1.180 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.211 0.789 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.216 0.784 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.285 -12.813 -26.258 29.886 hybrid contribution 0.626 -1.233 2.339 2.717 sum 6.912 -14.047 -23.919 28.587 Atomic orbital electron populations 1.22080 0.95017 1.02185 1.02258 1.21776 0.94663 0.96520 0.84567 0.91729 1.22648 0.97181 0.99327 0.94663 1.22670 0.98554 0.93101 0.87823 0.88213 1.60620 1.04389 1.07449 1.57034 1.20151 0.90001 0.92735 0.96039 1.20069 1.14299 0.94568 0.96797 1.24101 0.98247 0.94862 0.95668 1.77319 1.23606 1.03499 1.12082 1.48784 1.49894 1.08005 1.09897 1.22140 1.04552 0.72628 1.05401 1.22879 1.00067 0.90596 0.95046 1.23399 0.95582 0.88427 0.98492 1.48435 1.53037 1.29173 1.03854 1.19755 0.79604 0.84465 0.82858 1.90678 1.40997 1.28820 1.83577 1.23301 1.04524 1.02701 0.96463 1.85607 1.71163 1.39803 0.95797 1.23172 1.38564 1.13894 0.93626 0.89940 1.26151 0.95700 0.98019 0.99339 1.70188 1.40139 1.30284 1.14162 0.84939 0.78010 0.78154 0.76784 1.19283 1.20333 1.18039 0.94880 0.89366 0.92230 0.88070 0.89128 0.83321 0.89826 0.93735 0.78936 0.89908 0.86994 0.89383 0.78448 0.90288 0.90191 0.87908 0.87780 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.11 71.98 0.66 -3.07 16 2 C 0.13 2.88 3.46 45.34 0.16 3.03 16 3 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.10 -1.39 6.18 31.78 0.20 -1.19 16 5 C 0.09 1.20 3.32 46.31 0.15 1.35 16 6 H 0.10 1.35 7.92 -2.39 -0.02 1.33 16 7 N -0.66 -7.46 6.36 -488.39 -3.11 -10.57 16 8 C 0.14 1.56 6.04 85.56 0.52 2.08 16 9 C -0.25 -3.34 5.61 -20.15 -0.11 -3.46 16 10 C 0.06 0.93 11.96 85.23 1.02 1.95 16 11 N -0.34 -6.75 12.58 -57.02 -0.72 -7.47 16 12 N -0.38 -5.55 4.01 -369.56 -1.48 -7.03 16 13 C 0.09 0.62 11.47 127.77 1.47 2.08 16 14 C 0.06 0.74 11.40 83.54 0.95 1.70 16 15 C 0.07 1.18 6.27 86.86 0.54 1.73 16 16 N -0.61 -16.60 3.06 -788.04 -2.41 -19.02 16 17 C 0.55 21.10 7.66 87.66 0.67 21.77 16 18 O -0.56 -26.95 14.91 -3.03 -0.05 -26.99 16 19 C -0.12 -4.83 5.16 71.24 0.37 -4.47 16 20 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 21 C -0.54 -31.04 9.50 67.96 0.65 -30.40 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 25 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 29 H 0.03 1.05 6.89 -2.39 -0.02 1.03 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.14 7.85 -2.39 -0.02 1.13 16 34 H 0.35 3.61 8.30 -89.69 -0.74 2.86 16 35 H 0.08 0.92 8.09 -2.39 -0.02 0.91 16 36 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 42 H 0.08 1.42 7.48 -2.39 -0.02 1.40 16 43 H 0.08 1.26 7.81 -2.39 -0.02 1.25 16 44 H 0.10 3.81 8.14 -2.39 -0.02 3.80 16 45 H 0.10 3.85 7.85 -2.40 -0.02 3.83 16 46 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -82.16 395.92 1.31 -80.84 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.23 Total: 16.11 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 7.70 Total: -5.71 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -7.44 Total: -99.83 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -82.16 1.31 -80.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507298779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.002 kcal (2) G-P(sol) polarization free energy of solvation -82.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds