Wall clock time and date at job start Tue Mar 31 2020 21:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.50098 * 2 1 4 4 C 1.53044 * 109.49742 * 239.93518 * 2 1 3 5 5 C 1.53040 * 109.53647 * 178.65446 * 4 2 1 6 6 C 1.53185 * 109.31768 * 61.36222 * 5 4 2 7 7 N 1.46931 * 108.77710 * 305.36582 * 6 5 4 8 8 C 1.34774 * 120.63392 * 233.60772 * 7 6 5 9 9 O 1.21569 * 120.00065 * 174.08581 * 8 7 6 10 10 C 1.47708 * 119.99779 * 354.08948 * 8 7 6 11 11 C 1.39685 * 120.15293 * 320.43338 * 10 8 7 12 12 C 1.37837 * 119.92106 * 179.97438 * 11 10 8 13 13 C 1.38452 * 120.24570 * 0.02562 * 12 11 10 14 14 C 1.38386 * 120.31097 * 0.02562 * 13 12 11 15 15 F 1.35097 * 119.96315 * 179.97438 * 14 13 12 16 16 C 1.38549 * 120.06997 * 359.70139 * 14 13 12 17 17 F 1.35093 * 120.11984 * 180.27458 * 16 14 13 18 18 C 1.46930 * 118.73545 * 53.60617 * 7 6 5 19 19 H 1.09002 * 109.58831 * 66.18247 * 18 7 6 20 20 C 1.53003 * 109.58289 * 186.60408 * 18 7 6 21 21 N 1.46500 * 109.47354 * 290.74827 * 20 18 7 22 22 C 1.36934 * 119.99816 * 185.25962 * 21 20 18 23 23 H 1.08000 * 119.99899 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99975 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99876 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99993 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47032 * 60.00351 * 26 24 22 28 28 H 1.48505 * 109.46841 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47364 * 299.99805 * 26 24 22 30 30 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47449 * 300.00292 * 1 2 3 32 32 H 1.08995 * 109.47403 * 60.00257 * 1 2 3 33 33 H 1.09000 * 109.46071 * 298.66934 * 4 2 1 34 34 H 1.08998 * 109.46025 * 58.62809 * 4 2 1 35 35 H 1.09003 * 109.49600 * 181.31587 * 5 4 2 36 36 H 1.09005 * 109.49495 * 301.37642 * 5 4 2 37 37 H 1.08998 * 109.58827 * 65.15397 * 6 5 4 38 38 H 1.09002 * 109.59237 * 185.43951 * 6 5 4 39 39 H 1.07994 * 120.03882 * 359.95657 * 11 10 8 40 40 H 1.08004 * 119.87968 * 179.97438 * 12 11 10 41 41 H 1.07997 * 119.84849 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46989 * 50.75432 * 20 18 7 43 43 H 1.09008 * 109.46765 * 170.74692 * 20 18 7 44 44 H 0.96995 * 119.99476 * 5.25716 * 21 20 18 45 45 H 0.96998 * 120.00286 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7228 -1.2486 5 6 3.5708 -0.6940 -1.2666 6 6 4.1059 -1.4255 -0.0316 7 7 3.5053 -0.8283 1.1690 8 6 4.2818 -0.3849 2.1774 9 8 3.7817 0.2036 3.1162 10 6 5.7406 -0.6140 2.1417 11 6 6.2489 -1.8286 1.6755 12 6 7.6111 -2.0371 1.6438 13 6 8.4783 -1.0469 2.0731 14 6 7.9854 0.1598 2.5379 15 9 8.8380 1.1210 2.9555 16 6 6.6188 0.3853 2.5701 17 9 6.1367 1.5650 3.0184 18 6 2.0419 -0.7237 1.2494 19 1 1.6063 -1.7217 1.2979 20 6 1.6523 0.0703 2.4979 21 7 1.9602 -0.7179 3.6938 22 6 1.5979 -0.2553 4.9306 23 1 1.0856 0.6908 5.0246 24 6 1.8891 -1.0024 6.0637 25 7 2.5138 -2.1552 5.9493 26 14 1.3955 -0.3711 7.7511 27 1 -0.0786 -0.1994 7.8036 28 1 1.8170 -1.3475 8.7876 29 1 2.0553 0.9351 8.0034 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6972 -1.7571 -1.2355 34 1 1.6576 -0.2243 -2.1390 35 1 3.9333 -1.1885 -2.1678 36 1 3.9154 0.3401 -1.2553 37 1 3.8387 -2.4807 -0.0875 38 1 5.1904 -1.3250 0.0114 39 1 5.5755 -2.6036 1.3405 40 1 8.0034 -2.9767 1.2836 41 1 9.5444 -1.2169 2.0451 42 1 2.2133 1.0045 2.5241 43 1 0.5846 0.2884 2.4713 44 1 2.4206 -1.5675 3.6093 45 1 2.7170 -2.6775 6.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568430000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:09 Heat of formation + Delta-G solvation = -40.357737 kcal Electronic energy + Delta-G solvation = -31206.459982 eV Core-core repulsion = 26862.138549 eV Total energy + Delta-G solvation = -4344.321433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.34817 -48.38677 -40.52415 -38.61641 -37.09349 -34.67965 -33.52302 -32.12984 -31.13275 -30.38505 -30.13274 -27.06867 -26.07634 -24.51467 -23.46525 -22.84142 -22.32293 -21.03293 -20.36251 -19.39766 -17.77039 -17.45469 -16.96544 -16.77350 -16.26434 -15.90695 -15.45743 -15.03794 -14.87637 -14.76084 -14.67990 -14.45043 -14.23250 -13.89829 -13.75771 -13.41067 -13.09731 -12.94045 -12.74836 -12.52548 -12.35896 -12.10120 -12.06430 -11.99199 -11.72715 -11.51173 -11.37123 -10.97239 -10.87121 -10.67666 -10.60694 -10.57098 -10.17794 -9.82848 -9.51804 -9.06407 -8.76575 -8.73406 -8.38212 -8.10263 -6.53342 -5.57668 -2.74957 0.69278 0.90381 2.99800 3.19967 3.55036 3.59394 3.61522 3.66810 3.82921 4.36015 4.49354 4.66081 4.71730 4.73025 4.81911 4.87170 4.94053 4.97830 5.05939 5.30976 5.42603 5.52271 5.59282 5.66830 5.70633 5.73653 5.77619 5.79534 5.83521 5.87936 5.90943 5.94922 5.99948 6.07986 6.11053 6.16206 6.31767 6.43602 6.58077 6.62992 6.69071 6.93718 7.27891 7.85401 7.86787 8.60670 8.82423 9.71869 10.30699 10.64900 11.65966 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.005893 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.332410 B = 4750.462394 C = 7275.989142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.100 3.900 7 N -0.609 5.609 8 C 0.509 3.491 9 O -0.420 6.420 10 C -0.115 4.115 11 C -0.077 4.077 12 C -0.110 4.110 13 C -0.118 4.118 14 C 0.058 3.942 15 F -0.130 7.130 16 C 0.113 3.887 17 F -0.111 7.111 18 C 0.150 3.850 19 H 0.070 0.930 20 C 0.155 3.845 21 N -0.693 5.693 22 C -0.207 4.207 23 H 0.066 0.934 24 C -0.021 4.021 25 N -0.936 5.936 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.042 0.958 43 H 0.022 0.978 44 H 0.379 0.621 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.421 -0.988 -19.139 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.023 4.023 7 N -0.347 5.347 8 C 0.293 3.707 9 O -0.287 6.287 10 C -0.120 4.120 11 C -0.096 4.096 12 C -0.128 4.128 13 C -0.137 4.137 14 C 0.038 3.962 15 F -0.108 7.108 16 C 0.092 3.908 17 F -0.089 7.089 18 C 0.047 3.953 19 H 0.088 0.912 20 C 0.028 3.972 21 N -0.335 5.335 22 C -0.339 4.339 23 H 0.084 0.916 24 C -0.216 4.216 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.054 -0.438 -18.369 20.061 hybrid contribution 0.202 0.302 1.138 1.194 sum 8.255 -0.136 -17.231 19.107 Atomic orbital electron populations 1.21838 0.94424 1.02094 1.02009 1.21479 0.96036 1.00062 0.94376 0.90875 1.21573 0.95008 1.00832 0.97594 1.21929 0.96435 1.01346 0.97578 1.21959 0.98694 0.96916 0.84717 1.47638 1.06162 1.63225 1.17695 1.17838 0.84799 0.84330 0.83691 1.91249 1.71007 1.34800 1.31612 1.20235 0.95210 0.94396 1.02155 1.21430 0.95813 0.95692 0.96663 1.20974 0.92547 0.99161 1.00131 1.21126 1.01580 0.91401 0.99609 1.17559 0.85552 0.88636 1.04489 1.91523 1.69223 1.62024 1.88062 1.17641 0.89913 0.83449 0.99826 1.91597 1.88317 1.43005 1.85993 1.21540 0.78328 0.99593 0.95790 0.91164 1.21030 0.96185 0.95309 0.84664 1.42293 1.68073 1.22159 1.00956 1.19134 1.28349 1.02222 0.84209 0.91633 1.24621 1.02114 0.97406 0.97417 1.69638 1.47116 1.13871 1.27997 0.86304 0.77840 0.77648 0.84705 1.21575 1.21935 1.21556 0.92577 0.91581 0.92892 0.91809 0.91977 0.91091 0.91650 0.91656 0.89460 0.83671 0.83976 0.83732 0.94056 0.96068 0.78755 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.98 37.15 0.33 -1.39 16 2 C -0.10 -1.27 2.34 -90.50 -0.21 -1.49 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.11 -1.12 5.17 -26.69 -0.14 -1.26 16 5 C -0.13 -1.27 6.08 -26.62 -0.16 -1.43 16 6 C 0.10 1.10 4.86 -3.71 -0.02 1.08 16 7 N -0.61 -9.60 2.97 -166.37 -0.49 -10.10 16 8 C 0.51 9.88 6.57 -12.39 -0.08 9.80 16 9 O -0.42 -10.40 10.06 5.30 0.05 -10.34 16 10 C -0.12 -1.89 5.15 -104.92 -0.54 -2.43 16 11 C -0.08 -0.94 7.37 -39.19 -0.29 -1.23 16 12 C -0.11 -1.05 10.02 -39.65 -0.40 -1.45 16 13 C -0.12 -1.25 10.01 -39.45 -0.40 -1.64 16 14 C 0.06 0.83 7.30 -39.41 -0.29 0.54 16 15 F -0.13 -1.93 17.18 2.25 0.04 -1.89 16 16 C 0.11 1.94 7.25 -38.90 -0.28 1.66 16 17 F -0.11 -2.23 16.16 2.25 0.04 -2.20 16 18 C 0.15 2.48 2.39 -67.60 -0.16 2.32 16 19 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 20 C 0.16 3.34 4.79 -4.04 -0.02 3.32 16 21 N -0.69 -18.44 3.23 -59.90 -0.19 -18.64 16 22 C -0.21 -6.17 9.72 -15.06 -0.15 -6.32 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 24 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 25 N -0.94 -29.63 13.06 55.49 0.72 -28.91 16 26 Si 0.90 23.98 29.55 -169.99 -5.02 18.95 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 29 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.09 0.86 4.72 -51.93 -0.24 0.62 16 39 H 0.15 1.52 6.51 -52.49 -0.34 1.18 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.04 0.99 6.32 -51.93 -0.33 0.66 16 43 H 0.02 0.46 6.26 -51.92 -0.33 0.13 16 44 H 0.38 10.68 7.04 -40.82 -0.29 10.39 16 45 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -35.60 359.80 -8.38 -43.98 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.06 Total: 4.36 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.89 Total: -0.64 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.04 Total: -57.64 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.05 Total: -10.34 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.09 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.60 -8.38 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568430000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds