Wall clock time and date at job start Tue Mar 31 2020 21:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.50098 * 2 1 4 4 C 1.53044 * 109.49742 * 239.93518 * 2 1 3 5 5 C 1.53040 * 109.53647 * 178.65446 * 4 2 1 6 6 C 1.53185 * 109.31768 * 61.36222 * 5 4 2 7 7 N 1.46931 * 108.77710 * 305.36582 * 6 5 4 8 8 C 1.34774 * 120.63392 * 233.60772 * 7 6 5 9 9 O 1.21569 * 120.00065 * 174.08581 * 8 7 6 10 10 C 1.47708 * 119.99779 * 354.08948 * 8 7 6 11 11 C 1.39685 * 120.15293 * 320.43338 * 10 8 7 12 12 C 1.37837 * 119.92106 * 179.97438 * 11 10 8 13 13 C 1.38452 * 120.24570 * 0.02562 * 12 11 10 14 14 C 1.38386 * 120.31097 * 0.02562 * 13 12 11 15 15 F 1.35097 * 119.96315 * 179.97438 * 14 13 12 16 16 C 1.38549 * 120.06997 * 359.70139 * 14 13 12 17 17 F 1.35093 * 120.11984 * 180.27458 * 16 14 13 18 18 C 1.46930 * 118.73545 * 53.60617 * 7 6 5 19 19 H 1.09002 * 109.58831 * 66.18247 * 18 7 6 20 20 C 1.53003 * 109.58289 * 186.60408 * 18 7 6 21 21 N 1.46500 * 109.47354 * 290.74827 * 20 18 7 22 22 C 1.36934 * 119.99816 * 185.25962 * 21 20 18 23 23 H 1.08000 * 119.99899 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99975 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99876 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99993 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47032 * 60.00351 * 26 24 22 28 28 H 1.48505 * 109.46841 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47364 * 299.99805 * 26 24 22 30 30 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47449 * 300.00292 * 1 2 3 32 32 H 1.08995 * 109.47403 * 60.00257 * 1 2 3 33 33 H 1.09000 * 109.46071 * 298.66934 * 4 2 1 34 34 H 1.08998 * 109.46025 * 58.62809 * 4 2 1 35 35 H 1.09003 * 109.49600 * 181.31587 * 5 4 2 36 36 H 1.09005 * 109.49495 * 301.37642 * 5 4 2 37 37 H 1.08998 * 109.58827 * 65.15397 * 6 5 4 38 38 H 1.09002 * 109.59237 * 185.43951 * 6 5 4 39 39 H 1.07994 * 120.03882 * 359.95657 * 11 10 8 40 40 H 1.08004 * 119.87968 * 179.97438 * 12 11 10 41 41 H 1.07997 * 119.84849 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46989 * 50.75432 * 20 18 7 43 43 H 1.09008 * 109.46765 * 170.74692 * 20 18 7 44 44 H 0.96995 * 119.99476 * 5.25716 * 21 20 18 45 45 H 0.96998 * 120.00286 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7228 -1.2486 5 6 3.5708 -0.6940 -1.2666 6 6 4.1059 -1.4255 -0.0316 7 7 3.5053 -0.8283 1.1690 8 6 4.2818 -0.3849 2.1774 9 8 3.7817 0.2036 3.1162 10 6 5.7406 -0.6140 2.1417 11 6 6.2489 -1.8286 1.6755 12 6 7.6111 -2.0371 1.6438 13 6 8.4783 -1.0469 2.0731 14 6 7.9854 0.1598 2.5379 15 9 8.8380 1.1210 2.9555 16 6 6.6188 0.3853 2.5701 17 9 6.1367 1.5650 3.0184 18 6 2.0419 -0.7237 1.2494 19 1 1.6063 -1.7217 1.2979 20 6 1.6523 0.0703 2.4979 21 7 1.9602 -0.7179 3.6938 22 6 1.5979 -0.2553 4.9306 23 1 1.0856 0.6908 5.0246 24 6 1.8891 -1.0024 6.0637 25 7 2.5138 -2.1552 5.9493 26 14 1.3955 -0.3711 7.7511 27 1 -0.0786 -0.1994 7.8036 28 1 1.8170 -1.3475 8.7876 29 1 2.0553 0.9351 8.0034 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6972 -1.7571 -1.2355 34 1 1.6576 -0.2243 -2.1390 35 1 3.9333 -1.1885 -2.1678 36 1 3.9154 0.3401 -1.2553 37 1 3.8387 -2.4807 -0.0875 38 1 5.1904 -1.3250 0.0114 39 1 5.5755 -2.6036 1.3405 40 1 8.0034 -2.9767 1.2836 41 1 9.5444 -1.2169 2.0451 42 1 2.2133 1.0045 2.5241 43 1 0.5846 0.2884 2.4713 44 1 2.4206 -1.5675 3.6093 45 1 2.7170 -2.6775 6.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568430000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:09 Heat of formation + Delta-G solvation = -63.643989 kcal Electronic energy + Delta-G solvation = -31207.469749 eV Core-core repulsion = 26862.138549 eV Total energy + Delta-G solvation = -4345.331201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.58072 -49.66675 -41.82608 -39.69321 -38.39530 -36.40585 -34.91221 -33.68588 -32.24078 -31.84794 -31.43090 -28.53278 -27.14982 -26.10296 -24.90024 -23.87931 -23.82285 -22.29657 -21.48717 -20.62126 -19.29319 -18.80064 -18.43845 -18.08599 -17.50572 -17.14449 -16.83580 -16.60320 -16.13391 -16.05683 -15.89485 -15.55782 -15.50630 -15.42460 -15.09864 -15.01802 -14.56946 -14.16957 -13.97793 -13.78133 -13.67602 -13.40990 -13.14071 -13.04011 -12.96493 -12.87604 -12.79244 -12.55898 -12.46255 -12.16420 -11.92618 -11.85021 -11.62571 -11.50218 -11.11679 -10.90492 -10.24214 -9.90498 -9.80162 -9.48861 -8.65161 -7.87298 -5.05385 -0.36610 -0.15477 1.39025 1.44338 1.49293 1.81516 1.96475 2.43755 2.58655 2.74601 3.24675 3.39549 3.46371 3.66217 3.74397 3.77898 3.87783 3.93987 4.07087 4.16244 4.29292 4.32960 4.40707 4.52453 4.56220 4.64810 4.73376 4.80216 4.83035 4.88342 4.89987 4.96380 5.01383 5.04520 5.12732 5.13248 5.24591 5.29189 5.31587 5.41539 5.48670 5.55514 5.65514 5.81170 6.34587 6.53761 7.38618 7.43210 8.19925 8.43582 9.37097 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.005893 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.332410 B = 4750.462394 C = 7275.989142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.057 0.943 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.090 3.910 7 N -0.604 5.604 8 C 0.509 3.491 9 O -0.496 6.496 10 C -0.143 4.143 11 C -0.069 4.069 12 C -0.082 4.082 13 C -0.093 4.093 14 C 0.044 3.956 15 F -0.139 7.139 16 C 0.069 3.931 17 F -0.145 7.145 18 C 0.156 3.844 19 H 0.070 0.930 20 C 0.161 3.839 21 N -0.701 5.701 22 C -0.214 4.214 23 H 0.057 0.943 24 C -0.082 4.082 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.275 1.275 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.167 0.833 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.011 0.989 43 H 0.020 0.980 44 H 0.368 0.632 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -3.547 -22.560 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.031 4.031 7 N -0.339 5.339 8 C 0.295 3.705 9 O -0.368 6.368 10 C -0.147 4.147 11 C -0.088 4.088 12 C -0.100 4.100 13 C -0.112 4.112 14 C 0.024 3.976 15 F -0.117 7.117 16 C 0.048 3.952 17 F -0.124 7.124 18 C 0.052 3.948 19 H 0.088 0.912 20 C 0.035 3.965 21 N -0.342 5.342 22 C -0.346 4.346 23 H 0.075 0.925 24 C -0.273 4.273 25 N -0.622 5.622 26 Si 0.794 3.206 27 H -0.201 1.201 28 H -0.217 1.217 29 H -0.221 1.221 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.185 0.815 40 H 0.216 0.784 41 H 0.205 0.795 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.199 0.801 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.885 -2.994 -21.888 24.203 hybrid contribution -0.182 1.109 1.997 2.292 sum 9.703 -1.885 -19.891 22.211 Atomic orbital electron populations 1.21817 0.93610 1.02575 1.02073 1.21438 0.96690 0.99083 0.94068 0.92480 1.21571 0.95398 1.01228 0.96230 1.21933 0.95938 1.00850 0.98028 1.22399 0.99512 0.98121 0.83071 1.47834 1.05718 1.61976 1.18401 1.18536 0.86442 0.82270 0.83204 1.91223 1.72727 1.38555 1.34334 1.20177 0.93260 0.96423 1.04865 1.21777 0.97782 0.93971 0.95250 1.21602 0.90808 1.00467 0.97110 1.21717 1.03980 0.89181 0.96284 1.17891 0.84264 0.90003 1.05466 1.91496 1.69085 1.62790 1.88355 1.18205 0.91719 0.83127 1.02104 1.91496 1.88976 1.45002 1.86896 1.21425 0.79276 0.98986 0.95083 0.91211 1.20982 0.95339 0.94569 0.85642 1.42260 1.68429 1.22092 1.01371 1.19408 1.27516 1.01665 0.86057 0.92491 1.25333 1.03236 0.98058 1.00682 1.69784 1.49194 1.15028 1.28239 0.85333 0.78054 0.76592 0.80597 1.20105 1.21704 1.22090 0.91838 0.94006 0.90337 0.90549 0.89759 0.87288 0.92936 0.89157 0.88052 0.81534 0.78402 0.79465 0.97120 0.96229 0.80067 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.98 71.98 0.65 -2.62 16 2 C -0.09 -2.32 2.34 -10.72 -0.03 -2.34 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -1.76 5.17 30.62 0.16 -1.61 16 5 C -0.13 -1.96 6.08 30.67 0.19 -1.78 16 6 C 0.09 1.71 4.86 86.36 0.42 2.13 16 7 N -0.60 -19.12 2.97 -798.55 -2.37 -21.49 16 8 C 0.51 20.83 6.57 86.75 0.57 21.39 16 9 O -0.50 -26.75 10.06 -3.93 -0.04 -26.79 16 10 C -0.14 -4.75 5.15 -20.06 -0.10 -4.86 16 11 C -0.07 -1.47 7.37 22.52 0.17 -1.30 16 12 C -0.08 -1.11 10.02 22.23 0.22 -0.89 16 13 C -0.09 -1.56 10.01 22.36 0.22 -1.33 16 14 C 0.04 1.22 7.30 22.38 0.16 1.38 16 15 F -0.14 -4.12 17.18 44.97 0.77 -3.35 16 16 C 0.07 2.49 7.25 22.71 0.16 2.66 16 17 F -0.15 -6.46 16.16 44.97 0.73 -5.73 16 18 C 0.16 5.26 2.39 44.97 0.11 5.37 16 19 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 20 C 0.16 7.46 4.79 86.38 0.41 7.88 16 21 N -0.70 -39.84 3.23 -343.44 -1.11 -40.94 16 22 C -0.21 -13.50 9.72 84.03 0.82 -12.68 16 23 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 24 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 25 N -0.97 -63.94 13.06 21.65 0.28 -63.66 16 26 Si 0.96 51.45 29.55 68.60 2.03 53.48 16 27 H -0.27 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 29 H -0.29 -15.71 7.11 99.48 0.71 -15.01 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.14 6.44 -2.39 -0.02 1.13 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.10 1.65 4.72 -2.39 -0.01 1.64 16 39 H 0.17 2.79 6.51 -2.91 -0.02 2.77 16 40 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 41 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.01 0.58 6.32 -2.39 -0.02 0.57 16 43 H 0.02 0.91 6.26 -2.38 -0.01 0.90 16 44 H 0.37 21.97 7.04 -92.71 -0.65 21.32 16 45 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -88.75 359.80 5.26 -83.49 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.38 Total: 18.34 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.60 Total: 6.65 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -3.20 Total: -126.10 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.04 Total: -26.79 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 1.50 Total: -9.08 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -88.75 5.26 -83.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568430000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.846 kcal (2) G-P(sol) polarization free energy of solvation -88.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds