Wall clock time and date at job start Tue Mar 31 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52646 * 2 1 4 4 C 1.53043 * 109.49835 * 120.08337 * 2 1 3 5 5 C 1.53040 * 109.54251 * 181.31398 * 4 2 1 6 6 C 1.53194 * 109.31006 * 298.63802 * 5 4 2 7 7 N 1.46926 * 108.77776 * 54.63409 * 6 5 4 8 8 C 1.34768 * 120.63360 * 126.37073 * 7 6 5 9 9 O 1.21571 * 120.00691 * 185.94285 * 8 7 6 10 10 C 1.47707 * 119.99878 * 5.94287 * 8 7 6 11 11 C 1.39680 * 120.15304 * 39.37047 * 10 8 7 12 12 C 1.37848 * 119.92153 * 179.77018 * 11 10 8 13 13 C 1.38439 * 120.24219 * 0.48221 * 12 11 10 14 14 C 1.38380 * 120.31608 * 359.79225 * 13 12 11 15 15 F 1.35104 * 119.96868 * 179.97438 * 14 13 12 16 16 C 1.38551 * 120.06943 * 359.95203 * 14 13 12 17 17 F 1.35095 * 120.11940 * 180.02562 * 16 14 13 18 18 C 1.46931 * 118.73481 * 306.38883 * 7 6 5 19 19 H 1.08997 * 109.58424 * 293.67550 * 18 7 6 20 20 C 1.53001 * 109.58243 * 173.39825 * 18 7 6 21 21 N 1.46503 * 109.47381 * 69.51957 * 20 18 7 22 22 C 1.36934 * 120.00318 * 175.30089 * 21 20 18 23 23 H 1.08004 * 119.99573 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00038 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00316 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99985 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46977 * 59.99727 * 26 24 22 28 28 H 1.48501 * 109.47095 * 299.99983 * 26 24 22 29 29 H 1.48499 * 109.47441 * 180.02562 * 26 24 22 30 30 H 1.09002 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47070 * 300.07780 * 1 2 3 32 32 H 1.09003 * 109.47010 * 60.07580 * 1 2 3 33 33 H 1.09009 * 109.45902 * 61.29435 * 4 2 1 34 34 H 1.09001 * 109.44479 * 301.33191 * 4 2 1 35 35 H 1.08992 * 109.50012 * 178.68709 * 5 4 2 36 36 H 1.08999 * 109.49522 * 58.58072 * 5 4 2 37 37 H 1.08997 * 109.58521 * 294.84392 * 6 5 4 38 38 H 1.09000 * 109.70236 * 174.49112 * 6 5 4 39 39 H 1.08004 * 120.03824 * 359.97438 * 11 10 8 40 40 H 1.08000 * 119.88051 * 180.23160 * 12 11 10 41 41 H 1.08001 * 119.84267 * 179.76921 * 13 12 11 42 42 H 1.09001 * 109.47118 * 309.52000 * 20 18 7 43 43 H 1.08997 * 109.46867 * 189.51585 * 20 18 7 44 44 H 0.97006 * 119.99588 * 355.29972 * 21 20 18 45 45 H 0.96999 * 119.99864 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6952 1.2660 6 6 4.1052 -1.4268 0.0307 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3857 -2.1779 9 8 3.7811 0.2038 -3.1163 10 6 5.7397 -0.6157 -2.1429 11 6 6.2475 -1.8294 -1.6737 12 6 7.6094 -2.0409 -1.6476 13 6 8.4771 -1.0506 -2.0755 14 6 7.9851 0.1577 -2.5368 15 9 8.8382 1.1194 -2.9522 16 6 6.6183 0.3821 -2.5737 17 9 6.1369 1.5612 -3.0244 18 6 2.0412 -0.7238 -1.2496 19 1 1.6054 -1.7215 -1.3007 20 6 1.6517 0.0706 -2.4978 21 7 1.9530 -0.7203 -3.6937 22 6 1.5997 -0.2522 -4.9311 23 1 1.0985 0.6999 -5.0254 24 6 1.8846 -1.0018 -6.0641 25 7 2.4949 -2.1623 -5.9492 26 14 1.4020 -0.3635 -7.7521 27 1 2.0774 0.9353 -8.0019 28 1 -0.0699 -0.1747 -7.8077 29 1 1.8142 -1.3438 -8.7886 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6967 -1.7574 1.2352 34 1 1.6581 -0.2243 2.1387 35 1 3.9334 -1.1899 2.1670 36 1 3.9159 0.3387 1.2541 37 1 3.8374 -2.4819 0.0867 38 1 5.1897 -1.3270 -0.0150 39 1 5.5737 -2.6026 -1.3350 40 1 8.0012 -2.9810 -1.2882 41 1 9.5431 -1.2217 -2.0487 42 1 2.2168 1.0023 -2.5266 43 1 0.5851 0.2931 -2.4687 44 1 2.4028 -1.5756 -3.6090 45 1 2.7451 -2.4939 -5.0727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568430001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:12 Heat of formation + Delta-G solvation = -40.151459 kcal Electronic energy + Delta-G solvation = -31266.345359 eV Core-core repulsion = 26922.032871 eV Total energy + Delta-G solvation = -4344.312488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.39723 -48.43874 -40.61847 -38.68534 -37.18388 -34.87990 -33.68040 -32.28113 -31.19854 -30.44583 -30.01294 -26.99735 -26.09406 -24.42577 -23.43185 -22.90531 -22.44555 -21.16801 -20.45810 -19.46706 -17.81464 -17.50688 -17.06022 -16.93810 -16.32498 -16.00972 -15.55129 -15.14096 -14.94736 -14.79154 -14.71226 -14.54720 -14.30367 -13.95664 -13.77745 -13.50172 -13.31143 -13.08116 -12.78789 -12.64556 -12.41175 -12.24399 -12.13874 -12.06017 -11.82576 -11.57442 -11.45025 -11.05704 -10.74198 -10.67180 -10.59512 -10.37762 -10.14405 -9.85545 -9.15564 -8.99941 -8.80105 -8.78505 -8.44975 -8.17658 -6.61447 -5.91120 -2.78704 0.62310 0.84353 2.91989 3.10877 3.56229 3.62090 3.68576 3.76622 3.83380 4.30741 4.42072 4.59269 4.65205 4.74246 4.75320 4.84599 4.87301 4.92477 4.99576 5.24083 5.35525 5.45264 5.52550 5.60843 5.64629 5.67420 5.70524 5.77085 5.80041 5.84247 5.84740 5.87188 5.90602 6.01398 6.04355 6.09032 6.23681 6.32641 6.46274 6.55508 6.61996 6.86053 7.19812 7.75796 7.98973 8.71548 8.94076 9.43737 10.29691 10.45158 11.58041 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007959 B = 0.005907 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.363334 B = 4739.093471 C = 7257.917040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.100 3.900 7 N -0.610 5.610 8 C 0.508 3.492 9 O -0.422 6.422 10 C -0.119 4.119 11 C -0.079 4.079 12 C -0.109 4.109 13 C -0.117 4.117 14 C 0.059 3.941 15 F -0.129 7.129 16 C 0.114 3.886 17 F -0.111 7.111 18 C 0.149 3.851 19 H 0.069 0.931 20 C 0.161 3.839 21 N -0.705 5.705 22 C -0.296 4.296 23 H 0.060 0.940 24 C -0.053 4.053 25 N -0.948 5.948 26 Si 1.077 2.923 27 H -0.298 1.298 28 H -0.298 1.298 29 H -0.287 1.287 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.043 0.957 43 H 0.022 0.978 44 H 0.361 0.639 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -0.546 19.148 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.024 4.024 7 N -0.347 5.347 8 C 0.292 3.708 9 O -0.289 6.289 10 C -0.123 4.123 11 C -0.097 4.097 12 C -0.127 4.127 13 C -0.136 4.136 14 C 0.039 3.961 15 F -0.107 7.107 16 C 0.092 3.908 17 F -0.089 7.089 18 C 0.046 3.954 19 H 0.087 0.913 20 C 0.034 3.966 21 N -0.348 5.348 22 C -0.428 4.428 23 H 0.078 0.922 24 C -0.250 4.250 25 N -0.595 5.595 26 Si 0.909 3.091 27 H -0.225 1.225 28 H -0.225 1.225 29 H -0.212 1.212 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.194 0.806 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.932 -0.207 16.850 18.625 hybrid contribution 0.379 0.450 1.556 1.663 sum 8.311 0.243 18.406 20.197 Atomic orbital electron populations 1.21841 0.94362 1.02096 1.02077 1.21469 0.96086 1.00058 0.94277 0.90833 1.21576 0.95003 1.00826 0.97607 1.21926 0.96428 1.01369 0.97552 1.21988 0.98754 0.96899 0.84709 1.47670 1.06174 1.63133 1.17747 1.17898 0.84893 0.84234 0.83768 1.91265 1.71087 1.34809 1.31768 1.20217 0.95105 0.94563 1.02451 1.21429 0.95882 0.95665 0.96769 1.20978 0.92498 0.99202 1.00056 1.21139 1.01651 0.91296 0.99498 1.17558 0.85515 0.88626 1.04420 1.91530 1.69151 1.61953 1.88100 1.17643 0.89943 0.83460 0.99713 1.91602 1.88333 1.43038 1.85890 1.21563 0.78328 0.99544 0.95977 0.91300 1.20962 0.96265 0.95181 0.84183 1.42298 1.69749 1.20935 1.01853 1.19978 1.33193 1.04062 0.85588 0.92202 1.25615 1.00753 0.96711 1.01895 1.70868 1.43744 1.19891 1.24996 0.83262 0.75225 0.74781 0.75792 1.22544 1.22535 1.21247 0.92590 0.92781 0.91596 0.91808 0.91873 0.90990 0.91614 0.91645 0.89369 0.83715 0.83900 0.83626 0.93935 0.96027 0.80563 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.98 37.16 0.33 -1.41 16 2 C -0.10 -1.27 2.34 -90.50 -0.21 -1.49 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -1.12 5.17 -26.69 -0.14 -1.26 16 5 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 6 C 0.10 1.08 4.87 -3.71 -0.02 1.07 16 7 N -0.61 -9.56 2.97 -166.38 -0.49 -10.05 16 8 C 0.51 9.83 6.59 -12.40 -0.08 9.74 16 9 O -0.42 -10.50 10.05 5.30 0.05 -10.44 16 10 C -0.12 -1.94 5.16 -104.92 -0.54 -2.48 16 11 C -0.08 -0.94 7.37 -39.19 -0.29 -1.23 16 12 C -0.11 -1.03 10.02 -39.65 -0.40 -1.43 16 13 C -0.12 -1.22 10.01 -39.45 -0.40 -1.61 16 14 C 0.06 0.84 7.30 -39.41 -0.29 0.55 16 15 F -0.13 -1.90 17.18 2.25 0.04 -1.87 16 16 C 0.11 1.95 7.25 -38.90 -0.28 1.67 16 17 F -0.11 -2.23 16.15 2.25 0.04 -2.19 16 18 C 0.15 2.46 2.39 -67.60 -0.16 2.30 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.16 3.52 4.80 -4.04 -0.02 3.50 16 21 N -0.70 -18.84 3.24 -59.91 -0.19 -19.04 16 22 C -0.30 -8.96 9.70 -15.06 -0.15 -9.11 16 23 H 0.06 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.05 -1.65 5.50 -17.43 -0.10 -1.75 16 25 N -0.95 -30.85 13.70 55.49 0.76 -30.09 16 26 Si 1.08 27.93 29.92 -169.99 -5.09 22.84 16 27 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.09 0.86 4.69 -51.93 -0.24 0.62 16 39 H 0.15 1.48 6.49 -52.48 -0.34 1.14 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.04 1.04 6.29 -51.93 -0.33 0.71 16 43 H 0.02 0.48 6.25 -51.93 -0.32 0.15 16 44 H 0.36 9.99 5.92 -40.82 -0.24 9.75 16 45 H 0.25 8.06 6.77 -40.82 -0.28 7.79 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -36.85 358.08 -8.32 -45.17 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.94 Total: 4.62 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.89 Total: -4.36 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.07 Total: -59.18 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.44 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.06 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: -5.09 Total: 22.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.85 -8.32 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568430001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.019 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds