Wall clock time and date at job start Tue Mar 31 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52646 * 2 1 4 4 C 1.53043 * 109.49835 * 120.08337 * 2 1 3 5 5 C 1.53040 * 109.54251 * 181.31398 * 4 2 1 6 6 C 1.53194 * 109.31006 * 298.63802 * 5 4 2 7 7 N 1.46926 * 108.77776 * 54.63409 * 6 5 4 8 8 C 1.34768 * 120.63360 * 126.37073 * 7 6 5 9 9 O 1.21571 * 120.00691 * 185.94285 * 8 7 6 10 10 C 1.47707 * 119.99878 * 5.94287 * 8 7 6 11 11 C 1.39680 * 120.15304 * 39.37047 * 10 8 7 12 12 C 1.37848 * 119.92153 * 179.77018 * 11 10 8 13 13 C 1.38439 * 120.24219 * 0.48221 * 12 11 10 14 14 C 1.38380 * 120.31608 * 359.79225 * 13 12 11 15 15 F 1.35104 * 119.96868 * 179.97438 * 14 13 12 16 16 C 1.38551 * 120.06943 * 359.95203 * 14 13 12 17 17 F 1.35095 * 120.11940 * 180.02562 * 16 14 13 18 18 C 1.46931 * 118.73481 * 306.38883 * 7 6 5 19 19 H 1.08997 * 109.58424 * 293.67550 * 18 7 6 20 20 C 1.53001 * 109.58243 * 173.39825 * 18 7 6 21 21 N 1.46503 * 109.47381 * 69.51957 * 20 18 7 22 22 C 1.36934 * 120.00318 * 175.30089 * 21 20 18 23 23 H 1.08004 * 119.99573 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00038 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00316 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99985 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46977 * 59.99727 * 26 24 22 28 28 H 1.48501 * 109.47095 * 299.99983 * 26 24 22 29 29 H 1.48499 * 109.47441 * 180.02562 * 26 24 22 30 30 H 1.09002 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47070 * 300.07780 * 1 2 3 32 32 H 1.09003 * 109.47010 * 60.07580 * 1 2 3 33 33 H 1.09009 * 109.45902 * 61.29435 * 4 2 1 34 34 H 1.09001 * 109.44479 * 301.33191 * 4 2 1 35 35 H 1.08992 * 109.50012 * 178.68709 * 5 4 2 36 36 H 1.08999 * 109.49522 * 58.58072 * 5 4 2 37 37 H 1.08997 * 109.58521 * 294.84392 * 6 5 4 38 38 H 1.09000 * 109.70236 * 174.49112 * 6 5 4 39 39 H 1.08004 * 120.03824 * 359.97438 * 11 10 8 40 40 H 1.08000 * 119.88051 * 180.23160 * 12 11 10 41 41 H 1.08001 * 119.84267 * 179.76921 * 13 12 11 42 42 H 1.09001 * 109.47118 * 309.52000 * 20 18 7 43 43 H 1.08997 * 109.46867 * 189.51585 * 20 18 7 44 44 H 0.97006 * 119.99588 * 355.29972 * 21 20 18 45 45 H 0.96999 * 119.99864 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6952 1.2660 6 6 4.1052 -1.4268 0.0307 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3857 -2.1779 9 8 3.7811 0.2038 -3.1163 10 6 5.7397 -0.6157 -2.1429 11 6 6.2475 -1.8294 -1.6737 12 6 7.6094 -2.0409 -1.6476 13 6 8.4771 -1.0506 -2.0755 14 6 7.9851 0.1577 -2.5368 15 9 8.8382 1.1194 -2.9522 16 6 6.6183 0.3821 -2.5737 17 9 6.1369 1.5612 -3.0244 18 6 2.0412 -0.7238 -1.2496 19 1 1.6054 -1.7215 -1.3007 20 6 1.6517 0.0706 -2.4978 21 7 1.9530 -0.7203 -3.6937 22 6 1.5997 -0.2522 -4.9311 23 1 1.0985 0.6999 -5.0254 24 6 1.8846 -1.0018 -6.0641 25 7 2.4949 -2.1623 -5.9492 26 14 1.4020 -0.3635 -7.7521 27 1 2.0774 0.9353 -8.0019 28 1 -0.0699 -0.1747 -7.8077 29 1 1.8142 -1.3438 -8.7886 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6967 -1.7574 1.2352 34 1 1.6581 -0.2243 2.1387 35 1 3.9334 -1.1899 2.1670 36 1 3.9159 0.3387 1.2541 37 1 3.8374 -2.4819 0.0867 38 1 5.1897 -1.3270 -0.0150 39 1 5.5737 -2.6026 -1.3350 40 1 8.0012 -2.9810 -1.2882 41 1 9.5431 -1.2217 -2.0487 42 1 2.2168 1.0023 -2.5266 43 1 0.5851 0.2931 -2.4687 44 1 2.4028 -1.5756 -3.6090 45 1 2.7451 -2.4939 -5.0727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568430001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:11 Heat of formation + Delta-G solvation = -64.666573 kcal Electronic energy + Delta-G solvation = -31267.408414 eV Core-core repulsion = 26922.032871 eV Total energy + Delta-G solvation = -4345.375543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.63004 -49.71554 -41.92941 -39.76252 -38.49154 -36.70148 -35.05151 -33.78856 -32.28856 -31.74317 -31.48565 -28.43029 -27.18309 -26.01206 -24.99683 -24.00199 -23.93780 -22.39612 -21.58230 -20.69251 -19.40231 -18.89886 -18.57567 -18.16118 -17.56905 -17.26575 -16.91164 -16.53311 -16.24728 -16.12471 -15.98993 -15.73538 -15.59338 -15.47333 -15.25065 -15.15481 -14.60212 -14.29183 -14.02829 -13.86880 -13.83116 -13.48289 -13.21731 -13.07176 -12.98874 -12.68413 -12.61914 -12.59132 -12.53682 -11.98623 -11.93885 -11.78241 -11.58291 -11.40609 -11.08380 -10.91111 -10.31406 -9.98672 -9.85800 -9.58279 -8.77474 -8.33926 -5.15591 -0.43187 -0.20886 1.49760 1.61819 1.72312 1.77964 1.87366 2.36803 2.68820 2.71451 3.18579 3.32912 3.46438 3.59177 3.63059 3.71676 3.80595 3.86357 4.00980 4.09181 4.20622 4.22487 4.24304 4.45619 4.48328 4.57734 4.67944 4.70753 4.74905 4.81488 4.84024 4.90027 4.94084 4.97834 5.06616 5.07427 5.17794 5.21648 5.24155 5.34392 5.48266 5.58225 5.60152 5.71647 6.43784 6.54954 7.19062 7.30696 8.09748 8.21716 9.19225 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007959 B = 0.005907 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.363334 B = 4739.093471 C = 7257.917040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.056 0.944 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.089 3.911 7 N -0.603 5.603 8 C 0.509 3.491 9 O -0.500 6.500 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.082 4.082 13 C -0.091 4.091 14 C 0.045 3.955 15 F -0.138 7.138 16 C 0.069 3.931 17 F -0.145 7.145 18 C 0.155 3.845 19 H 0.070 0.930 20 C 0.167 3.833 21 N -0.714 5.714 22 C -0.302 4.302 23 H 0.047 0.953 24 C -0.114 4.114 25 N -0.976 5.976 26 Si 1.124 2.876 27 H -0.294 1.294 28 H -0.274 1.274 29 H -0.287 1.287 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.168 0.832 40 H 0.200 0.800 41 H 0.190 0.810 42 H 0.010 0.990 43 H 0.018 0.982 44 H 0.353 0.647 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -3.152 22.560 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.032 4.032 7 N -0.339 5.339 8 C 0.295 3.705 9 O -0.373 6.373 10 C -0.151 4.151 11 C -0.088 4.088 12 C -0.099 4.099 13 C -0.110 4.110 14 C 0.025 3.975 15 F -0.116 7.116 16 C 0.048 3.952 17 F -0.124 7.124 18 C 0.052 3.948 19 H 0.088 0.912 20 C 0.041 3.959 21 N -0.356 5.356 22 C -0.434 4.434 23 H 0.065 0.935 24 C -0.304 4.304 25 N -0.626 5.626 26 Si 0.950 3.050 27 H -0.221 1.221 28 H -0.200 1.200 29 H -0.213 1.213 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.185 0.815 40 H 0.217 0.783 41 H 0.207 0.793 42 H 0.028 0.972 43 H 0.035 0.965 44 H 0.185 0.815 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.808 -2.815 20.377 22.789 hybrid contribution -0.003 1.269 0.707 1.453 sum 9.805 -1.545 21.084 23.304 Atomic orbital electron populations 1.21820 0.93585 1.02589 1.02077 1.21436 0.96716 0.99057 0.94034 0.92531 1.21575 0.95418 1.01237 0.96169 1.21935 0.95901 1.00862 0.98047 1.22442 0.99577 0.98161 0.83007 1.47866 1.05674 1.61858 1.18467 1.18607 0.86564 0.82124 0.83238 1.91238 1.72835 1.38643 1.34557 1.20158 0.93085 0.96621 1.05188 1.21789 0.97867 0.93910 0.95277 1.21618 0.90754 1.00521 0.97000 1.21739 1.04075 0.89052 0.96115 1.17892 0.84194 0.90009 1.05399 1.91503 1.69007 1.62730 1.88394 1.18224 0.91788 0.83137 1.02031 1.91498 1.89005 1.45085 1.86817 1.21438 0.79351 0.98926 0.95124 0.91235 1.20900 0.95195 0.94447 0.85357 1.42258 1.70237 1.21006 1.02121 1.20219 1.32287 1.03343 0.87544 0.93482 1.26988 1.01140 0.96747 1.05489 1.70973 1.46308 1.21201 1.24155 0.82665 0.76296 0.74192 0.71844 1.22094 1.19980 1.21289 0.91806 0.90162 0.94199 0.90483 0.89623 0.87107 0.92952 0.89022 0.87936 0.81461 0.78273 0.79322 0.97233 0.96493 0.81491 0.95274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.98 71.98 0.65 -2.67 16 2 C -0.09 -2.33 2.34 -10.72 -0.03 -2.36 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -1.75 5.17 30.62 0.16 -1.60 16 5 C -0.13 -1.94 6.08 30.67 0.19 -1.76 16 6 C 0.09 1.67 4.87 86.36 0.42 2.09 16 7 N -0.60 -19.05 2.97 -798.57 -2.37 -21.43 16 8 C 0.51 20.79 6.59 86.75 0.57 21.36 16 9 O -0.50 -27.16 10.05 -3.94 -0.04 -27.20 16 10 C -0.15 -4.84 5.16 -20.06 -0.10 -4.94 16 11 C -0.07 -1.45 7.37 22.53 0.17 -1.29 16 12 C -0.08 -1.07 10.02 22.23 0.22 -0.85 16 13 C -0.09 -1.50 10.01 22.35 0.22 -1.28 16 14 C 0.05 1.25 7.30 22.38 0.16 1.41 16 15 F -0.14 -4.08 17.18 44.97 0.77 -3.30 16 16 C 0.07 2.48 7.25 22.71 0.16 2.65 16 17 F -0.15 -6.51 16.15 44.97 0.73 -5.78 16 18 C 0.15 5.27 2.39 44.97 0.11 5.38 16 19 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 20 C 0.17 7.90 4.80 86.38 0.41 8.32 16 21 N -0.71 -40.89 3.24 -343.45 -1.11 -42.01 16 22 C -0.30 -19.39 9.70 84.03 0.82 -18.58 16 23 H 0.05 3.05 7.83 -2.91 -0.02 3.03 16 24 C -0.11 -7.35 5.50 84.86 0.47 -6.88 16 25 N -0.98 -66.22 13.70 21.65 0.30 -65.92 16 26 Si 1.12 58.53 29.92 68.60 2.05 60.58 16 27 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 28 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 29 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.12 6.43 -2.39 -0.02 1.10 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.10 1.64 4.69 -2.39 -0.01 1.63 16 39 H 0.17 2.69 6.49 -2.91 -0.02 2.67 16 40 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.01 0.54 6.29 -2.39 -0.02 0.52 16 43 H 0.02 0.82 6.25 -2.39 -0.01 0.80 16 44 H 0.35 20.85 5.92 -92.70 -0.55 20.30 16 45 H 0.24 16.09 6.77 -92.71 -0.63 15.46 16 Total: -1.00 -92.54 358.08 5.55 -87.00 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.62 Total: 19.06 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.60 Total: -1.00 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -3.19 Total: -129.35 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 1.50 Total: -9.09 kcal Atomic # 14 Polarization: 58.53 SS G_CDS: 2.05 Total: 60.58 kcal Total: -92.54 5.55 -87.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568430001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.328 kcal (2) G-P(sol) polarization free energy of solvation -92.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds