Wall clock time and date at job start Tue Mar 31 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49911 * 2 1 4 4 C 1.53045 * 109.52378 * 239.92633 * 2 1 3 5 5 C 1.53048 * 109.53712 * 301.39778 * 4 2 1 6 6 C 1.53199 * 109.30911 * 298.63679 * 5 4 2 7 7 N 1.46922 * 108.77713 * 54.63733 * 6 5 4 8 8 C 1.34777 * 120.63520 * 126.36607 * 7 6 5 9 9 O 1.21616 * 120.00166 * 191.16652 * 8 7 6 10 10 C 1.47169 * 119.99582 * 11.16897 * 8 7 6 11 11 C 1.38248 * 128.47493 * 188.08137 * 10 8 7 12 12 N 1.31241 * 111.88955 * 179.84637 * 11 10 8 13 13 N 1.27339 * 120.03655 * 0.49427 * 12 11 10 14 14 S 1.56631 * 109.74056 * 359.71400 * 13 12 11 15 15 C 1.46933 * 118.73494 * 306.38876 * 7 6 5 16 16 H 1.08998 * 109.70398 * 293.74745 * 15 7 6 17 17 C 1.53000 * 109.58177 * 173.39768 * 15 7 6 18 18 C 1.53002 * 109.46748 * 179.89954 * 17 15 7 19 19 C 1.53001 * 109.47054 * 175.70447 * 18 17 15 20 20 N 1.46502 * 109.47088 * 180.02562 * 19 18 17 21 21 C 1.36944 * 119.99886 * 179.97438 * 20 19 18 22 22 H 1.07996 * 119.99877 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99663 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99517 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47076 * 90.00546 * 25 23 21 27 27 H 1.48498 * 109.47246 * 210.00215 * 25 23 21 28 28 H 1.48497 * 109.47738 * 330.00717 * 25 23 21 29 29 H 1.08996 * 109.47381 * 299.93042 * 1 2 3 30 30 H 1.09004 * 109.47249 * 59.93224 * 1 2 3 31 31 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46220 * 61.41481 * 4 2 1 33 33 H 1.08999 * 109.46082 * 181.39454 * 4 2 1 34 34 H 1.08999 * 109.49342 * 58.58325 * 5 4 2 35 35 H 1.08995 * 109.50066 * 178.65286 * 5 4 2 36 36 H 1.08997 * 109.58132 * 174.42011 * 6 5 4 37 37 H 1.08996 * 109.58688 * 294.84403 * 6 5 4 38 38 H 1.07993 * 124.05632 * 0.02562 * 11 10 8 39 39 H 1.09002 * 109.47581 * 59.90352 * 17 15 7 40 40 H 1.08998 * 109.47658 * 299.89790 * 17 15 7 41 41 H 1.08994 * 109.47569 * 55.70560 * 18 17 15 42 42 H 1.09004 * 109.47324 * 295.70253 * 18 17 15 43 43 H 1.08997 * 109.47472 * 60.00346 * 19 18 17 44 44 H 1.09004 * 109.46897 * 300.00068 * 19 18 17 45 45 H 0.96999 * 119.99965 * 359.97438 * 20 19 18 46 46 H 0.97007 * 119.99803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7228 -1.2483 5 6 1.5043 -2.1558 -1.2661 6 6 2.0153 -2.9038 -0.0306 7 7 1.6521 -2.1382 1.1696 8 6 0.9745 -2.7221 2.1777 9 8 0.5033 -2.0411 3.0684 10 6 0.8050 -4.1838 2.2008 11 6 0.0258 -4.9460 3.0512 12 7 0.1137 -6.2269 2.7791 13 7 0.8630 -6.6270 1.8305 14 16 1.5562 -5.3985 1.1496 15 6 2.0413 -0.7236 1.2496 16 1 3.1271 -0.6434 1.2998 17 6 1.4222 -0.0913 2.4978 18 6 1.8310 1.3808 2.5799 19 6 1.1267 2.0403 3.7673 20 7 1.5177 3.4500 3.8456 21 6 1.0090 4.2476 4.8357 22 1 0.3200 3.8374 5.5591 23 6 1.3800 5.5832 4.9101 24 7 2.2201 6.0830 4.0289 25 14 0.6867 6.6711 6.2612 26 1 1.5775 6.6149 7.4480 27 1 0.5996 8.0710 5.7736 28 1 -0.6681 6.1923 6.6361 29 1 -0.3634 0.5127 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6994 -0.1958 -2.1389 33 1 3.1311 -0.7439 -1.2348 34 1 0.4145 -2.1359 -1.2544 35 1 1.8493 -2.6626 -2.1673 36 1 1.5571 -3.8918 0.0137 37 1 3.0993 -3.0036 -0.0863 38 1 -0.5845 -4.5363 3.8424 39 1 1.7760 -0.6166 3.3849 40 1 0.3361 -0.1641 2.4414 41 1 1.5446 1.8894 1.6594 42 1 2.9106 1.4512 2.7130 43 1 1.4132 1.5318 4.6879 44 1 0.0471 1.9699 3.6342 45 1 2.1369 3.8183 3.1961 46 1 2.4790 7.0164 4.0807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656607190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:21 Heat of formation + Delta-G solvation = 64.310208 kcal Electronic energy + Delta-G solvation = -27643.391438 eV Core-core repulsion = 23889.741885 eV Total energy + Delta-G solvation = -3753.649553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35970 -40.87814 -38.08338 -35.81791 -34.29449 -33.43221 -32.30083 -31.49636 -29.67987 -28.26455 -27.19780 -26.15189 -24.68937 -23.81198 -22.92893 -21.60773 -20.98236 -20.22377 -19.72709 -18.65438 -17.36281 -16.90607 -16.56974 -16.47401 -15.80652 -15.59592 -15.25903 -14.77468 -14.57201 -14.22010 -14.16386 -13.86182 -13.55458 -13.41001 -13.18527 -13.02481 -12.70666 -12.48662 -12.25913 -12.09245 -11.89398 -11.63166 -11.43688 -11.13804 -10.92669 -10.87695 -10.80251 -10.74048 -10.48979 -10.40122 -10.38901 -10.05286 -9.98407 -9.92953 -9.62358 -9.37777 -8.88158 -8.79566 -6.83624 -5.70370 -2.97834 -0.65739 0.37714 1.06979 1.62532 2.41342 2.62704 3.47866 3.52739 3.54707 3.62380 3.93165 4.19978 4.33746 4.41774 4.51277 4.63321 4.65445 4.82486 4.83881 5.02709 5.21907 5.23099 5.28907 5.42479 5.46660 5.49797 5.57197 5.61594 5.66427 5.76654 5.86318 5.88058 5.95952 6.12774 6.18612 6.26127 6.41553 6.44441 6.48086 6.73319 6.91102 7.03946 7.04535 7.28150 7.69955 7.77160 8.49560 9.60176 10.20207 10.54951 11.52979 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002546 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.960961 B =10996.182195 C =12204.113850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.116 4.116 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.600 5.600 8 C 0.596 3.404 9 O -0.491 6.491 10 C -0.286 4.286 11 C 0.072 3.928 12 N -0.251 5.251 13 N -0.279 5.279 14 S 0.425 5.575 15 C 0.156 3.844 16 H 0.079 0.921 17 C -0.108 4.108 18 C -0.132 4.132 19 C 0.157 3.843 20 N -0.735 5.735 21 C -0.234 4.234 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.216 0.784 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.382 0.618 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -24.645 -14.854 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.173 4.173 6 C -0.021 4.021 7 N -0.334 5.334 8 C 0.381 3.619 9 O -0.366 6.366 10 C -0.427 4.427 11 C -0.094 4.094 12 N -0.115 5.115 13 N -0.259 5.259 14 S 0.562 5.438 15 C 0.055 3.945 16 H 0.097 0.903 17 C -0.146 4.146 18 C -0.170 4.170 19 C 0.029 3.971 20 N -0.379 5.379 21 C -0.366 4.366 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.586 5.586 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.233 0.767 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.018 -25.941 -15.074 30.020 hybrid contribution -0.671 1.740 1.297 2.272 sum 0.347 -24.201 -13.776 27.850 Atomic orbital electron populations 1.21894 0.94571 1.01581 1.02458 1.21607 0.97071 1.00306 0.93619 0.88836 1.21581 1.00678 0.94750 0.98342 1.21959 1.02124 0.96658 0.96581 1.22095 1.01156 0.93509 0.85379 1.47942 1.56158 1.12215 1.17119 1.16606 0.79114 0.83498 0.82684 1.90990 1.46461 1.61328 1.37839 1.28309 1.08171 1.01126 1.05139 1.24524 0.98225 0.86794 0.99875 1.70836 1.14797 1.15554 1.10328 1.78708 1.11745 1.26594 1.08860 1.82814 1.38987 0.92306 1.29734 1.21525 0.98912 0.77210 0.96875 0.90311 1.22130 1.02475 0.94543 0.95410 1.21903 1.00555 0.94709 0.99862 1.20572 0.96052 0.85892 0.94550 1.42397 1.55247 1.04928 1.35312 1.19271 1.20752 0.91176 1.05376 0.91239 1.24729 1.00237 0.97112 0.99210 1.69661 1.37767 1.13828 1.37309 0.86188 0.78498 0.80075 0.81472 1.21785 1.21821 1.20780 0.91370 0.92803 0.93017 0.91140 0.91481 0.90715 0.90240 0.91508 0.89750 0.76737 0.90417 0.89565 0.91938 0.92412 0.96522 0.96513 0.78442 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.20 37.16 0.30 -1.19 16 2 C -0.11 -0.98 2.31 -90.50 -0.21 -1.19 16 3 H 0.09 0.95 6.68 -51.93 -0.35 0.60 16 4 C -0.12 -0.75 5.43 -26.68 -0.14 -0.90 16 5 C -0.13 -0.71 5.74 -26.60 -0.15 -0.86 16 6 C 0.10 0.59 5.67 -3.71 -0.02 0.57 16 7 N -0.60 -5.34 2.41 -166.58 -0.40 -5.74 16 8 C 0.60 6.40 7.54 -12.63 -0.10 6.30 16 9 O -0.49 -6.87 12.46 5.26 0.07 -6.80 16 10 C -0.29 -2.58 6.47 -35.95 -0.23 -2.81 16 11 C 0.07 0.67 11.56 -17.80 -0.21 0.46 16 12 N -0.25 -2.68 11.54 30.36 0.35 -2.33 16 13 N -0.28 -2.80 12.51 60.35 0.75 -2.04 16 14 S 0.43 2.90 19.43 -107.50 -2.09 0.81 16 15 C 0.16 1.59 2.71 -67.60 -0.18 1.41 16 16 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 17 C -0.11 -1.47 2.66 -26.73 -0.07 -1.54 16 18 C -0.13 -2.14 5.11 -26.73 -0.14 -2.28 16 19 C 0.16 3.34 6.26 -4.04 -0.03 3.32 16 20 N -0.73 -19.41 5.60 -59.90 -0.34 -19.75 16 21 C -0.23 -6.83 9.99 -15.05 -0.15 -6.98 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 24 N -0.94 -28.92 13.06 55.49 0.72 -28.19 16 25 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.50 5.97 -51.93 -0.31 0.19 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.46 6.34 -51.93 -0.33 0.13 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.33 3.33 -20.51 -0.07 0.26 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.22 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.08 1.18 6.63 -51.93 -0.34 0.84 16 40 H 0.09 1.29 5.03 -51.93 -0.26 1.03 16 41 H 0.06 0.99 6.37 -51.93 -0.33 0.66 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -34.17 364.85 -8.28 -42.45 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.41 Total: 4.43 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.42 Total: -6.30 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 1.09 Total: -58.05 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.80 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.09 Total: 0.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.17 -8.28 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656607190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.759 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds