Wall clock time and date at job start Tue Mar 31 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49911 * 2 1 4 4 C 1.53045 * 109.52378 * 239.92633 * 2 1 3 5 5 C 1.53048 * 109.53712 * 301.39778 * 4 2 1 6 6 C 1.53199 * 109.30911 * 298.63679 * 5 4 2 7 7 N 1.46922 * 108.77713 * 54.63733 * 6 5 4 8 8 C 1.34777 * 120.63520 * 126.36607 * 7 6 5 9 9 O 1.21616 * 120.00166 * 191.16652 * 8 7 6 10 10 C 1.47169 * 119.99582 * 11.16897 * 8 7 6 11 11 C 1.38248 * 128.47493 * 188.08137 * 10 8 7 12 12 N 1.31241 * 111.88955 * 179.84637 * 11 10 8 13 13 N 1.27339 * 120.03655 * 0.49427 * 12 11 10 14 14 S 1.56631 * 109.74056 * 359.71400 * 13 12 11 15 15 C 1.46933 * 118.73494 * 306.38876 * 7 6 5 16 16 H 1.08998 * 109.70398 * 293.74745 * 15 7 6 17 17 C 1.53000 * 109.58177 * 173.39768 * 15 7 6 18 18 C 1.53002 * 109.46748 * 179.89954 * 17 15 7 19 19 C 1.53001 * 109.47054 * 175.70447 * 18 17 15 20 20 N 1.46502 * 109.47088 * 180.02562 * 19 18 17 21 21 C 1.36944 * 119.99886 * 179.97438 * 20 19 18 22 22 H 1.07996 * 119.99877 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99663 * 179.97438 * 21 20 19 24 24 N 1.31610 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99517 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47076 * 90.00546 * 25 23 21 27 27 H 1.48498 * 109.47246 * 210.00215 * 25 23 21 28 28 H 1.48497 * 109.47738 * 330.00717 * 25 23 21 29 29 H 1.08996 * 109.47381 * 299.93042 * 1 2 3 30 30 H 1.09004 * 109.47249 * 59.93224 * 1 2 3 31 31 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46220 * 61.41481 * 4 2 1 33 33 H 1.08999 * 109.46082 * 181.39454 * 4 2 1 34 34 H 1.08999 * 109.49342 * 58.58325 * 5 4 2 35 35 H 1.08995 * 109.50066 * 178.65286 * 5 4 2 36 36 H 1.08997 * 109.58132 * 174.42011 * 6 5 4 37 37 H 1.08996 * 109.58688 * 294.84403 * 6 5 4 38 38 H 1.07993 * 124.05632 * 0.02562 * 11 10 8 39 39 H 1.09002 * 109.47581 * 59.90352 * 17 15 7 40 40 H 1.08998 * 109.47658 * 299.89790 * 17 15 7 41 41 H 1.08994 * 109.47569 * 55.70560 * 18 17 15 42 42 H 1.09004 * 109.47324 * 295.70253 * 18 17 15 43 43 H 1.08997 * 109.47472 * 60.00346 * 19 18 17 44 44 H 1.09004 * 109.46897 * 300.00068 * 19 18 17 45 45 H 0.96999 * 119.99965 * 359.97438 * 20 19 18 46 46 H 0.97007 * 119.99803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7228 -1.2483 5 6 1.5043 -2.1558 -1.2661 6 6 2.0153 -2.9038 -0.0306 7 7 1.6521 -2.1382 1.1696 8 6 0.9745 -2.7221 2.1777 9 8 0.5033 -2.0411 3.0684 10 6 0.8050 -4.1838 2.2008 11 6 0.0258 -4.9460 3.0512 12 7 0.1137 -6.2269 2.7791 13 7 0.8630 -6.6270 1.8305 14 16 1.5562 -5.3985 1.1496 15 6 2.0413 -0.7236 1.2496 16 1 3.1271 -0.6434 1.2998 17 6 1.4222 -0.0913 2.4978 18 6 1.8310 1.3808 2.5799 19 6 1.1267 2.0403 3.7673 20 7 1.5177 3.4500 3.8456 21 6 1.0090 4.2476 4.8357 22 1 0.3200 3.8374 5.5591 23 6 1.3800 5.5832 4.9101 24 7 2.2201 6.0830 4.0289 25 14 0.6867 6.6711 6.2612 26 1 1.5775 6.6149 7.4480 27 1 0.5996 8.0710 5.7736 28 1 -0.6681 6.1923 6.6361 29 1 -0.3634 0.5127 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6994 -0.1958 -2.1389 33 1 3.1311 -0.7439 -1.2348 34 1 0.4145 -2.1359 -1.2544 35 1 1.8493 -2.6626 -2.1673 36 1 1.5571 -3.8918 0.0137 37 1 3.0993 -3.0036 -0.0863 38 1 -0.5845 -4.5363 3.8424 39 1 1.7760 -0.6166 3.3849 40 1 0.3361 -0.1641 2.4414 41 1 1.5446 1.8894 1.6594 42 1 2.9106 1.4512 2.7130 43 1 1.4132 1.5318 4.6879 44 1 0.0471 1.9699 3.6342 45 1 2.1369 3.8183 3.1961 46 1 2.4790 7.0164 4.0807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656607190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:21 Heat of formation + Delta-G solvation = 41.789042 kcal Electronic energy + Delta-G solvation = -27644.368029 eV Core-core repulsion = 23889.741885 eV Total energy + Delta-G solvation = -3754.626144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.11850 -41.60667 -38.88164 -37.32218 -35.58550 -34.46583 -33.32536 -32.82087 -31.06766 -29.19236 -28.01480 -27.25826 -25.87851 -24.79088 -24.20055 -22.78417 -22.11081 -21.14860 -20.37129 -19.37780 -19.13153 -18.01651 -17.36865 -17.19991 -16.75920 -16.60736 -16.29190 -16.03392 -15.61930 -15.27980 -15.21891 -15.08771 -14.84859 -14.64434 -14.28689 -13.80767 -13.66086 -13.42554 -13.25395 -13.05565 -12.92295 -12.85780 -12.75843 -12.49711 -12.30722 -12.12061 -12.04903 -11.93408 -11.73901 -11.62423 -11.33915 -11.24076 -11.12857 -11.00747 -10.91053 -10.60379 -10.35272 -9.63638 -9.01839 -7.96944 -5.25946 -1.35088 -0.26729 0.42558 0.89592 1.45675 1.47972 1.56674 1.68223 1.84712 2.54957 2.93568 3.25890 3.36043 3.61671 3.69289 3.76392 3.84632 3.99029 4.00567 4.15799 4.23534 4.26412 4.41651 4.53593 4.56071 4.60813 4.69551 4.72304 4.76152 4.83127 4.91097 4.95760 5.06029 5.10167 5.16683 5.26737 5.29172 5.33861 5.43346 5.47096 5.50462 5.52787 5.73228 6.17537 6.26256 6.60173 6.90727 7.31945 8.07472 8.33171 9.26711 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002546 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.960961 B =10996.182195 C =12204.113850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.099 3.901 7 N -0.596 5.596 8 C 0.594 3.406 9 O -0.536 6.536 10 C -0.308 4.308 11 C 0.069 3.931 12 N -0.278 5.278 13 N -0.315 5.315 14 S 0.525 5.475 15 C 0.161 3.839 16 H 0.094 0.906 17 C -0.093 4.093 18 C -0.116 4.116 19 C 0.156 3.844 20 N -0.746 5.746 21 C -0.250 4.250 22 H 0.070 0.930 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.975 3.025 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.272 1.272 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.222 0.778 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.375 0.625 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -25.856 -16.730 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.170 4.170 6 C -0.025 4.025 7 N -0.328 5.328 8 C 0.380 3.620 9 O -0.414 6.414 10 C -0.449 4.449 11 C -0.098 4.098 12 N -0.141 5.141 13 N -0.294 5.294 14 S 0.662 5.338 15 C 0.058 3.942 16 H 0.112 0.888 17 C -0.131 4.131 18 C -0.154 4.154 19 C 0.030 3.970 20 N -0.389 5.389 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.803 3.197 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.197 1.197 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.207 0.793 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.023 -27.217 -16.975 32.140 hybrid contribution -0.952 2.088 1.793 2.912 sum 1.071 -25.129 -15.182 29.378 Atomic orbital electron populations 1.21846 0.95585 1.01403 1.01311 1.21590 0.96139 1.00109 0.94678 0.89909 1.21566 1.01559 0.95127 0.96644 1.21982 1.01580 0.96016 0.97425 1.22419 1.03015 0.93112 0.84004 1.47992 1.55316 1.11809 1.17730 1.16822 0.78683 0.84053 0.82473 1.90970 1.48427 1.62476 1.39493 1.28162 1.09300 1.00779 1.06631 1.24679 0.98311 0.86656 1.00138 1.70896 1.15935 1.16083 1.11224 1.78426 1.12709 1.28821 1.09487 1.82342 1.35732 0.89268 1.26470 1.21388 0.99350 0.77990 0.95425 0.88784 1.21892 1.01646 0.92613 0.96919 1.21749 0.99925 0.96145 0.97617 1.20701 0.96068 0.83853 0.96422 1.42590 1.55034 1.06599 1.34636 1.19635 1.20706 0.91972 1.05914 0.91232 1.25584 1.00894 0.98453 1.01748 1.69808 1.39026 1.14017 1.39029 0.85121 0.78174 0.77847 0.78516 1.21210 1.21666 1.19672 0.94369 0.92033 0.92722 0.90482 0.89964 0.91678 0.87110 0.91040 0.86821 0.76217 0.92112 0.91166 0.91459 0.92166 0.97402 0.97277 0.79278 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.20 71.98 0.59 -2.27 16 2 C -0.11 -1.78 2.31 -10.72 -0.02 -1.81 16 3 H 0.08 1.59 6.68 -2.39 -0.02 1.57 16 4 C -0.11 -1.06 5.43 30.63 0.17 -0.90 16 5 C -0.13 -0.86 5.74 30.68 0.18 -0.69 16 6 C 0.10 0.75 5.67 86.37 0.49 1.24 16 7 N -0.60 -9.52 2.41 -799.18 -1.93 -11.45 16 8 C 0.59 12.48 7.54 86.59 0.65 13.14 16 9 O -0.54 -15.58 12.46 -4.08 -0.05 -15.64 16 10 C -0.31 -5.25 6.47 24.62 0.16 -5.09 16 11 C 0.07 1.29 11.56 84.78 0.98 2.27 16 12 N -0.28 -5.86 11.54 -57.87 -0.67 -6.53 16 13 N -0.31 -5.87 12.51 37.02 0.46 -5.41 16 14 S 0.53 5.80 19.43 -56.49 -1.10 4.70 16 15 C 0.16 3.07 2.71 44.97 0.12 3.19 16 16 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.09 -2.59 2.66 30.59 0.08 -2.51 16 18 C -0.12 -3.85 5.11 30.60 0.16 -3.69 16 19 C 0.16 6.89 6.26 86.38 0.54 7.43 16 20 N -0.75 -40.40 5.60 -343.44 -1.92 -42.33 16 21 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 22 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 24 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 25 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 29 H 0.04 0.98 6.34 -2.39 -0.02 0.96 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 1.03 5.97 -2.39 -0.01 1.02 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.59 6.34 -2.39 -0.02 0.58 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.07 0.44 3.33 -22.36 -0.07 0.36 16 37 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.22 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.06 1.92 6.63 -2.39 -0.02 1.90 16 40 H 0.07 2.22 5.03 -2.39 -0.01 2.21 16 41 H 0.07 2.17 6.37 -2.39 -0.02 2.15 16 42 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.38 21.04 7.67 -92.71 -0.71 20.33 16 46 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -75.79 364.85 2.74 -73.05 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.24 Total: 21.88 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.40 Total: -7.64 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -3.77 Total: -125.88 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.05 Total: -15.64 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.10 Total: 4.70 kcal Total: -75.79 2.74 -73.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656607190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.842 kcal (2) G-P(sol) polarization free energy of solvation -75.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds