Wall clock time and date at job start Tue Mar 31 2020 21:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42895 * 109.47503 * 239.99913 * 2 1 3 5 5 C 1.42905 * 114.00128 * 210.00358 * 4 2 1 6 6 C 1.50700 * 109.46954 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00353 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99877 * 180.02562 * 6 5 4 9 9 C 1.48139 * 127.83660 * 180.02562 * 8 6 5 10 10 C 1.54394 * 104.61894 * 140.41186 * 9 8 6 11 11 H 1.08998 * 110.33810 * 142.73408 * 10 9 8 12 12 C 1.52998 * 110.33904 * 264.88952 * 10 9 8 13 13 N 1.46503 * 109.47153 * 293.54275 * 12 10 9 14 14 C 1.36936 * 119.99779 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00472 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99730 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00082 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99838 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47260 * 89.99774 * 18 16 14 20 20 H 1.48508 * 109.47042 * 209.99864 * 18 16 14 21 21 H 1.48500 * 109.47393 * 329.99396 * 18 16 14 22 22 C 1.54284 * 104.95726 * 23.86196 * 10 9 8 23 23 H 1.08994 * 110.34188 * 241.13062 * 22 10 9 24 24 C 1.53000 * 110.33844 * 118.97587 * 22 10 9 25 25 F 1.39899 * 109.46999 * 60.00466 * 24 22 10 26 26 F 1.39907 * 109.47060 * 179.97438 * 24 22 10 27 27 F 1.39900 * 109.47349 * 299.99778 * 24 22 10 28 28 C 1.48145 * 127.83693 * 359.67512 * 8 6 5 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46516 * 299.99257 * 5 4 2 37 37 H 1.08996 * 109.47248 * 59.99618 * 5 4 2 38 38 H 1.09006 * 110.40923 * 259.19611 * 9 8 6 39 39 H 1.09000 * 110.40852 * 21.50862 * 9 8 6 40 40 H 1.09000 * 109.47397 * 53.54749 * 12 10 9 41 41 H 1.09000 * 109.46616 * 173.54624 * 12 10 9 42 42 H 0.96998 * 120.00034 * 0.02562 * 13 12 10 43 43 H 0.96997 * 120.00206 * 180.02562 * 17 16 14 44 44 H 1.09000 * 110.40936 * 338.37382 * 28 8 6 45 45 H 1.08994 * 110.40393 * 100.80091 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 3.2660 -1.3245 -0.9885 6 6 3.6694 -1.9989 -2.2744 7 8 2.9489 -1.9294 -3.2475 8 7 4.8304 -2.6801 -2.3427 9 6 5.3931 -3.4021 -3.5075 10 6 6.9064 -3.0998 -3.4593 11 1 7.4778 -3.9773 -3.7619 12 6 7.2403 -1.9111 -4.3628 13 7 7.0036 -2.2788 -5.7610 14 6 7.2358 -1.3683 -6.7571 15 1 7.5937 -0.3792 -6.5121 16 6 7.0121 -1.7169 -8.0820 17 7 7.2356 -0.8420 -9.0395 18 14 6.3937 -3.4278 -8.5059 19 1 4.9087 -3.4296 -8.5140 20 1 6.8964 -3.8175 -9.8479 21 1 6.8844 -4.3967 -7.4931 22 6 7.1965 -2.7533 -1.9841 23 1 7.5766 -1.7351 -1.9018 24 6 8.2007 -3.7445 -1.3926 25 9 9.3954 -3.6869 -2.1182 26 9 8.4508 -3.4136 -0.0564 27 9 7.6746 -5.0389 -1.4622 28 6 5.8365 -2.8708 -1.2722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5873 -0.7124 37 1 3.1809 -2.0706 -0.1985 38 1 5.2163 -4.4735 -3.4122 39 1 4.9581 -3.0268 -4.4337 40 1 6.6074 -1.0641 -4.0977 41 1 8.2872 -1.6376 -4.2312 42 1 6.6825 -3.1672 -5.9812 43 1 7.0790 -1.0854 -9.9653 44 1 5.7371 -2.0937 -0.5143 45 1 5.7300 -3.8577 -0.8221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677048456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:38 Heat of formation + Delta-G solvation = -240.052085 kcal Electronic energy + Delta-G solvation = -30891.619978 eV Core-core repulsion = 26107.869923 eV Total energy + Delta-G solvation = -4783.750054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.09353 -48.56633 -48.55131 -41.35525 -39.65928 -38.62280 -36.63801 -34.19368 -33.67212 -33.04184 -31.03108 -29.28148 -28.07499 -27.09008 -26.53381 -24.85471 -23.07108 -22.25531 -21.65171 -20.75303 -19.91442 -19.39585 -19.10436 -18.73655 -18.24586 -17.70711 -17.10577 -16.71865 -16.59127 -16.10696 -15.97131 -15.58557 -15.42374 -15.28766 -15.08165 -14.98123 -14.95623 -14.76227 -14.68308 -14.53884 -14.21867 -14.01459 -13.84385 -13.74940 -13.47102 -13.20246 -13.05966 -13.02490 -12.88616 -12.86045 -12.48496 -12.35456 -12.33521 -12.13999 -11.94348 -11.75607 -11.63253 -11.05257 -10.94675 -10.63973 -9.94195 -9.35826 -8.06602 -5.40740 1.33146 1.38875 1.40036 1.44351 1.51214 1.77764 2.44841 2.65290 2.72065 2.90729 2.94193 3.25357 3.36564 3.55470 3.60083 3.72718 3.82082 3.99490 4.02050 4.08995 4.14236 4.16242 4.27813 4.31446 4.33385 4.44857 4.62115 4.69455 4.75312 4.76888 4.82257 4.89231 4.92554 4.95615 4.97961 5.16119 5.30777 5.34808 5.70587 6.16566 6.17008 6.40494 7.03090 7.04730 7.77737 7.95453 9.14855 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.004151 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.141188 B = 6743.897124 C = 9373.773717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.176 4.176 4 O -0.398 6.398 5 C 0.054 3.946 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.617 5.617 9 C 0.106 3.894 10 C -0.097 4.097 11 H 0.104 0.896 12 C 0.167 3.833 13 N -0.757 5.757 14 C -0.236 4.236 15 H 0.057 0.943 16 C -0.062 4.062 17 N -0.982 5.982 18 Si 0.950 3.050 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.244 1.244 22 C -0.141 4.141 23 H 0.147 0.853 24 C 0.469 3.531 25 F -0.187 7.187 26 F -0.175 7.175 27 F -0.181 7.181 28 C 0.109 3.891 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.038 0.962 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.134 0.866 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -5.234 30.296 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.234 4.234 4 O -0.318 6.318 5 C -0.025 4.025 6 C 0.317 3.683 7 O -0.453 6.453 8 N -0.352 5.352 9 C -0.017 4.017 10 C -0.117 4.117 11 H 0.122 0.878 12 C 0.041 3.959 13 N -0.402 5.402 14 C -0.366 4.366 15 H 0.075 0.925 16 C -0.253 4.253 17 N -0.633 5.633 18 Si 0.777 3.223 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.168 1.168 22 C -0.162 4.162 23 H 0.164 0.836 24 C 0.415 3.585 25 F -0.169 7.169 26 F -0.156 7.156 27 F -0.162 7.162 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.152 0.848 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.434 -4.946 29.571 30.470 hybrid contribution 0.124 -0.715 -1.178 1.384 sum -5.309 -5.661 28.393 29.435 Atomic orbital electron populations 1.21903 0.93275 1.02689 1.02951 1.22431 0.95511 0.92824 0.87584 1.22330 1.01852 0.96355 1.02841 1.88061 1.35542 1.70417 1.37763 1.22345 0.88400 0.98294 0.93457 1.20774 0.79328 0.77606 0.90640 1.90766 1.52915 1.61332 1.40252 1.48824 1.19714 1.52173 1.14467 1.22434 0.91581 0.97497 0.90220 1.22237 0.96411 1.00071 0.92937 0.87814 1.20757 0.98181 0.94633 0.82313 1.42649 1.81631 1.13421 1.02543 1.18990 1.36107 0.94667 0.86883 0.92496 1.25496 1.02425 1.01938 0.95467 1.69873 1.56979 1.36609 0.99805 0.85486 0.78038 0.80964 0.77842 1.21191 1.21803 1.16836 1.23362 0.96096 1.01244 0.95472 0.83564 1.20172 0.81147 0.81042 0.76144 1.93220 1.49447 1.96380 1.77831 1.93210 1.94791 1.92270 1.35349 1.93189 1.86156 1.40809 1.96083 1.22576 0.82606 1.06253 0.89880 0.92329 0.93512 0.88598 0.89029 0.93718 0.89297 0.91991 0.87433 0.86364 0.88487 0.92145 0.96127 0.94369 0.80058 0.93278 0.84771 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.56 71.98 0.69 -1.45 16 2 C 0.07 1.08 3.34 30.60 0.10 1.18 16 3 C -0.18 -2.38 9.53 71.98 0.69 -1.69 16 4 O -0.40 -9.51 9.52 -129.94 -1.24 -10.75 16 5 C 0.05 0.94 5.21 71.24 0.37 1.31 16 6 C 0.53 14.69 7.99 87.66 0.70 15.39 16 7 O -0.57 -23.80 16.76 16.02 0.27 -23.53 16 8 N -0.62 -13.91 3.32 -808.81 -2.69 -16.60 16 9 C 0.11 2.86 6.40 86.54 0.55 3.42 16 10 C -0.10 -2.44 2.42 -9.89 -0.02 -2.47 16 11 H 0.10 2.56 7.40 -2.39 -0.02 2.54 16 12 C 0.17 6.00 5.42 86.38 0.47 6.47 16 13 N -0.76 -35.52 4.93 -343.45 -1.69 -37.21 16 14 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 15 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 16 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 17 N -0.98 -64.67 13.97 21.65 0.30 -64.37 16 18 Si 0.95 46.85 27.74 68.60 1.90 48.75 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.24 -10.59 6.52 99.48 0.65 -9.95 16 22 C -0.14 -2.29 2.70 -10.04 -0.03 -2.31 16 23 H 0.15 2.02 7.72 -2.39 -0.02 2.00 16 24 C 0.47 7.75 2.53 71.98 0.18 7.93 16 25 F -0.19 -4.05 16.93 44.97 0.76 -3.29 16 26 F -0.17 -2.52 17.17 44.97 0.77 -1.75 16 27 F -0.18 -3.12 16.06 44.97 0.72 -2.40 16 28 C 0.11 1.32 6.24 86.39 0.54 1.86 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.09 0.77 7.79 -2.39 -0.02 0.75 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 7.87 -2.39 -0.02 0.75 16 36 H 0.11 1.24 7.67 -2.39 -0.02 1.22 16 37 H 0.12 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.06 2.22 7.09 -2.39 -0.02 2.21 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.37 16.41 5.25 -92.71 -0.49 15.92 16 43 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 44 H 0.13 0.62 7.30 -2.39 -0.02 0.60 16 45 H 0.11 0.94 7.22 -2.39 -0.02 0.92 16 Total: -1.00 -84.63 379.34 5.16 -79.46 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.46 Total: 18.21 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.59 Total: 13.46 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.08 Total: -118.18 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.97 Total: -34.27 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 2.26 Total: -7.44 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.90 Total: 48.75 kcal Total: -84.63 5.16 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.588 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds