Wall clock time and date at job start Tue Mar 31 2020 21:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47256 * 2 1 4 4 O 1.42900 * 109.47145 * 120.00457 * 2 1 3 5 5 C 1.42897 * 114.00280 * 90.00039 * 4 2 1 6 6 C 1.50703 * 109.47005 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99858 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99839 * 179.71975 * 6 5 4 9 9 C 1.47419 * 125.64704 * 179.97438 * 8 6 5 10 10 C 1.55137 * 104.72280 * 155.82165 * 9 8 6 11 11 H 1.08998 * 110.90951 * 155.27458 * 10 9 8 12 12 C 1.52997 * 111.18881 * 279.19249 * 10 9 8 13 13 N 1.46508 * 109.47211 * 291.21330 * 12 10 9 14 14 C 1.36928 * 120.00241 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00104 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00282 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99651 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47079 * 90.00616 * 18 16 14 20 20 H 1.48506 * 109.46973 * 210.00332 * 18 16 14 21 21 H 1.48500 * 109.47413 * 330.00371 * 18 16 14 22 22 C 1.55155 * 101.48609 * 37.29266 * 10 9 8 23 23 H 1.09006 * 110.87070 * 82.76788 * 22 10 9 24 24 C 1.52997 * 110.72050 * 205.97183 * 22 10 9 25 25 F 1.39906 * 109.46804 * 180.26030 * 24 22 10 26 26 F 1.39896 * 109.46841 * 300.25689 * 24 22 10 27 27 F 1.39900 * 109.47365 * 60.26183 * 24 22 10 28 28 C 1.47029 * 125.64924 * 0.30174 * 8 6 5 29 29 H 1.09000 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46489 * 299.99459 * 1 2 3 31 31 H 1.08996 * 109.46954 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.47047 * 240.00064 * 2 1 3 33 33 H 1.08998 * 109.46778 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46848 * 300.00383 * 3 2 1 35 35 H 1.09000 * 109.47040 * 60.00060 * 3 2 1 36 36 H 1.08996 * 109.47402 * 59.99744 * 5 4 2 37 37 H 1.09001 * 109.46539 * 299.99623 * 5 4 2 38 38 H 1.09001 * 110.36651 * 274.74966 * 9 8 6 39 39 H 1.09001 * 110.37165 * 37.07303 * 9 8 6 40 40 H 1.08999 * 109.47799 * 51.21819 * 12 10 9 41 41 H 1.09002 * 109.46874 * 171.21641 * 12 10 9 42 42 H 0.97002 * 119.99361 * 0.02562 * 13 12 10 43 43 H 0.96991 * 119.99739 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.88162 * 300.44102 * 28 8 6 45 45 H 1.09004 * 109.87872 * 61.60384 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7016 -2.6833 2.2745 7 8 2.8762 -1.9808 3.2475 8 7 2.9509 -4.0059 2.3446 9 6 3.4427 -4.7256 3.5335 10 6 2.9791 -6.1916 3.3267 11 1 3.6187 -6.8829 3.8754 12 6 1.5130 -6.3696 3.7263 13 7 1.3818 -6.2266 5.1784 14 6 0.1528 -6.3476 5.7700 15 1 -0.7199 -6.5480 5.1661 16 6 0.0284 -6.2116 7.1459 17 7 -1.1529 -6.3283 7.7146 18 14 1.5377 -5.8643 8.1903 19 1 1.7282 -4.3966 8.3123 20 1 1.3512 -6.4531 9.5408 21 1 2.7334 -6.4670 7.5482 22 6 3.1626 -6.3605 1.7953 23 1 4.1974 -6.6023 1.5525 24 6 2.2163 -7.4328 1.2518 25 9 2.4074 -7.5676 -0.1276 26 9 2.4839 -8.6532 1.8811 27 9 0.8923 -7.0581 1.5046 28 6 2.7841 -4.9688 1.2461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.9320 -2.2467 0.1985 37 1 1.2538 -2.5433 0.7124 38 1 4.5301 -4.6730 3.5860 39 1 2.9979 -4.3117 4.4385 40 1 0.9065 -5.6118 3.2303 41 1 1.1725 -7.3607 3.4265 42 1 2.1655 -6.0463 5.7207 43 1 -1.2396 -6.2337 8.6760 44 1 1.7471 -4.9723 0.9105 45 1 3.4428 -4.7050 0.4187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677048457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:41 Heat of formation + Delta-G solvation = -207.692242 kcal Electronic energy + Delta-G solvation = -31327.329609 eV Core-core repulsion = 26544.982782 eV Total energy + Delta-G solvation = -4782.346826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.23443 -47.71799 -47.60509 -40.38281 -38.74619 -37.56284 -34.78866 -33.05412 -32.65643 -31.32667 -29.84498 -28.08111 -27.40885 -25.98417 -25.52986 -23.07074 -21.90490 -21.59078 -20.51433 -19.72999 -18.59294 -18.34368 -17.95618 -17.42443 -17.01558 -16.86631 -16.48500 -15.77582 -15.24663 -14.90455 -14.65094 -14.56578 -14.36050 -14.09753 -14.05405 -13.89275 -13.80950 -13.61291 -13.56463 -13.32687 -13.08333 -12.90334 -12.72684 -12.61471 -12.44455 -12.29622 -12.16379 -12.08790 -11.82392 -11.67495 -11.26178 -11.03458 -10.97866 -10.79626 -10.64438 -10.11598 -9.90715 -9.81456 -9.57618 -8.89896 -8.79200 -7.24809 -5.75201 -3.11912 2.37342 2.53536 2.71215 3.38319 3.42683 3.45497 3.48449 3.57548 3.72518 3.84062 4.27128 4.45081 4.48963 4.60965 4.63680 4.65144 4.75771 4.82059 4.88923 4.92446 4.97309 5.01742 5.09971 5.33884 5.39110 5.42770 5.49452 5.55368 5.56969 5.58322 5.65164 5.77124 5.91663 5.97742 5.99300 6.06508 6.45625 6.58604 6.88564 7.31745 7.98530 8.09916 8.42557 9.20237 9.92375 10.10506 11.43072 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.004276 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.405501 B = 6546.838016 C = 8679.887713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.357 6.357 5 C 0.050 3.950 6 C 0.532 3.468 7 O -0.507 6.507 8 N -0.614 5.614 9 C 0.115 3.885 10 C -0.107 4.107 11 H 0.108 0.892 12 C 0.156 3.844 13 N -0.752 5.752 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.145 4.145 23 H 0.131 0.869 24 C 0.463 3.537 25 F -0.187 7.187 26 F -0.174 7.174 27 F -0.167 7.167 28 C 0.107 3.893 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.083 0.917 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 5.482 -22.358 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.275 6.275 5 C -0.030 4.030 6 C 0.320 3.680 7 O -0.381 6.381 8 N -0.351 5.351 9 C -0.007 4.007 10 C -0.127 4.127 11 H 0.127 0.873 12 C 0.029 3.971 13 N -0.398 5.398 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.165 4.165 23 H 0.149 0.851 24 C 0.409 3.591 25 F -0.168 7.168 26 F -0.156 7.156 27 F -0.149 7.149 28 C -0.016 4.016 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.999 6.034 -21.631 25.006 hybrid contribution 0.727 -0.291 0.430 0.893 sum 11.726 5.743 -21.201 24.899 Atomic orbital electron populations 1.22327 0.95670 1.02682 1.02863 1.22176 0.93967 0.93966 0.87707 1.21852 1.01819 0.94286 1.02691 1.88078 1.86558 1.17569 1.35310 1.22196 1.01206 0.84241 0.95399 1.19825 0.78030 0.80243 0.89920 1.90774 1.50475 1.59217 1.37602 1.48229 1.67326 1.06232 1.13301 1.22398 0.98683 0.89770 0.89869 1.22858 1.01490 0.97267 0.91046 0.87349 1.21064 0.89979 0.99574 0.86476 1.42645 1.07340 1.88303 1.01511 1.18992 0.85633 1.41582 0.91185 0.89204 1.24652 0.96209 1.01658 0.96343 1.69697 1.21567 1.56566 1.10200 0.86583 0.83375 0.78353 0.80438 1.20867 1.21659 1.20333 1.23547 1.00500 0.93249 0.99243 0.85064 1.20154 0.81061 0.82665 0.75256 1.93182 1.95128 1.96315 1.32218 1.93217 1.93704 1.46642 1.81999 1.93244 1.37340 1.90941 1.93344 1.21944 1.02803 0.86551 0.90327 0.92307 0.91388 0.91538 0.92128 0.91959 0.91164 0.91484 0.90431 0.90141 0.90897 0.88348 0.94537 0.94197 0.80709 0.93020 0.89913 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.53 37.16 0.35 -1.17 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 4 O -0.36 -4.66 9.52 -55.14 -0.52 -5.19 16 5 C 0.05 0.54 5.42 36.01 0.20 0.74 16 6 C 0.53 7.94 7.93 -10.98 -0.09 7.85 16 7 O -0.51 -10.11 16.75 -14.35 -0.24 -10.35 16 8 N -0.61 -7.86 3.30 -170.38 -0.56 -8.43 16 9 C 0.11 1.58 6.31 -2.41 -0.02 1.57 16 10 C -0.11 -1.43 2.76 -88.35 -0.24 -1.67 16 11 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.16 2.90 4.11 -4.04 -0.02 2.88 16 13 N -0.75 -17.74 5.05 -59.90 -0.30 -18.05 16 14 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 15 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 18 Si 0.88 22.45 27.73 -169.99 -4.71 17.73 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 22 C -0.14 -1.39 2.90 -88.79 -0.26 -1.65 16 23 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 24 C 0.46 5.25 2.35 37.16 0.09 5.34 16 25 F -0.19 -1.89 17.23 2.25 0.04 -1.86 16 26 F -0.17 -2.25 16.49 2.25 0.04 -2.21 16 27 F -0.17 -2.32 12.65 2.25 0.03 -2.29 16 28 C 0.11 0.98 5.60 -3.06 -0.02 0.97 16 29 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.73 7.42 -51.93 -0.39 1.35 16 40 H 0.04 0.72 7.37 -51.93 -0.38 0.34 16 41 H 0.04 0.77 5.63 -51.93 -0.29 0.48 16 42 H 0.36 8.22 5.25 -40.82 -0.21 8.01 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.08 0.76 7.11 -51.93 -0.37 0.39 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -36.50 373.26 -6.51 -43.01 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.68 Total: 3.40 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.01 Total: 7.61 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.09 Total: -55.48 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.77 Total: -15.54 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.10 Total: -6.36 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.50 -6.51 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.686 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds