Wall clock time and date at job start Tue Mar 31 2020 21:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47256 * 2 1 4 4 O 1.42900 * 109.47145 * 120.00457 * 2 1 3 5 5 C 1.42897 * 114.00280 * 90.00039 * 4 2 1 6 6 C 1.50703 * 109.47005 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99858 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99839 * 179.71975 * 6 5 4 9 9 C 1.47419 * 125.64704 * 179.97438 * 8 6 5 10 10 C 1.55137 * 104.72280 * 155.82165 * 9 8 6 11 11 H 1.08998 * 110.90951 * 155.27458 * 10 9 8 12 12 C 1.52997 * 111.18881 * 279.19249 * 10 9 8 13 13 N 1.46508 * 109.47211 * 291.21330 * 12 10 9 14 14 C 1.36928 * 120.00241 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00104 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00282 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99651 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47079 * 90.00616 * 18 16 14 20 20 H 1.48506 * 109.46973 * 210.00332 * 18 16 14 21 21 H 1.48500 * 109.47413 * 330.00371 * 18 16 14 22 22 C 1.55155 * 101.48609 * 37.29266 * 10 9 8 23 23 H 1.09006 * 110.87070 * 82.76788 * 22 10 9 24 24 C 1.52997 * 110.72050 * 205.97183 * 22 10 9 25 25 F 1.39906 * 109.46804 * 180.26030 * 24 22 10 26 26 F 1.39896 * 109.46841 * 300.25689 * 24 22 10 27 27 F 1.39900 * 109.47365 * 60.26183 * 24 22 10 28 28 C 1.47029 * 125.64924 * 0.30174 * 8 6 5 29 29 H 1.09000 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46489 * 299.99459 * 1 2 3 31 31 H 1.08996 * 109.46954 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.47047 * 240.00064 * 2 1 3 33 33 H 1.08998 * 109.46778 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46848 * 300.00383 * 3 2 1 35 35 H 1.09000 * 109.47040 * 60.00060 * 3 2 1 36 36 H 1.08996 * 109.47402 * 59.99744 * 5 4 2 37 37 H 1.09001 * 109.46539 * 299.99623 * 5 4 2 38 38 H 1.09001 * 110.36651 * 274.74966 * 9 8 6 39 39 H 1.09001 * 110.37165 * 37.07303 * 9 8 6 40 40 H 1.08999 * 109.47799 * 51.21819 * 12 10 9 41 41 H 1.09002 * 109.46874 * 171.21641 * 12 10 9 42 42 H 0.97002 * 119.99361 * 0.02562 * 13 12 10 43 43 H 0.96991 * 119.99739 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.88162 * 300.44102 * 28 8 6 45 45 H 1.09004 * 109.87872 * 61.60384 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7016 -2.6833 2.2745 7 8 2.8762 -1.9808 3.2475 8 7 2.9509 -4.0059 2.3446 9 6 3.4427 -4.7256 3.5335 10 6 2.9791 -6.1916 3.3267 11 1 3.6187 -6.8829 3.8754 12 6 1.5130 -6.3696 3.7263 13 7 1.3818 -6.2266 5.1784 14 6 0.1528 -6.3476 5.7700 15 1 -0.7199 -6.5480 5.1661 16 6 0.0284 -6.2116 7.1459 17 7 -1.1529 -6.3283 7.7146 18 14 1.5377 -5.8643 8.1903 19 1 1.7282 -4.3966 8.3123 20 1 1.3512 -6.4531 9.5408 21 1 2.7334 -6.4670 7.5482 22 6 3.1626 -6.3605 1.7953 23 1 4.1974 -6.6023 1.5525 24 6 2.2163 -7.4328 1.2518 25 9 2.4074 -7.5676 -0.1276 26 9 2.4839 -8.6532 1.8811 27 9 0.8923 -7.0581 1.5046 28 6 2.7841 -4.9688 1.2461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.9320 -2.2467 0.1985 37 1 1.2538 -2.5433 0.7124 38 1 4.5301 -4.6730 3.5860 39 1 2.9979 -4.3117 4.4385 40 1 0.9065 -5.6118 3.2303 41 1 1.1725 -7.3607 3.4265 42 1 2.1655 -6.0463 5.7207 43 1 -1.2396 -6.2337 8.6760 44 1 1.7471 -4.9723 0.9105 45 1 3.4428 -4.7050 0.4187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677048457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:41 Heat of formation + Delta-G solvation = -233.403322 kcal Electronic energy + Delta-G solvation = -31328.444525 eV Core-core repulsion = 26544.982782 eV Total energy + Delta-G solvation = -4783.461743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.15742 -48.63203 -48.54714 -41.40990 -39.65579 -38.62072 -36.56736 -34.19494 -33.68304 -33.04804 -31.03331 -29.17572 -28.08882 -27.19520 -26.63966 -24.62786 -23.28567 -22.27065 -21.65950 -20.73710 -19.85065 -19.50515 -19.22206 -18.54835 -18.00813 -17.74884 -17.45378 -16.82604 -16.53755 -16.26009 -15.89206 -15.53340 -15.43063 -15.28834 -15.12766 -14.95535 -14.90705 -14.70745 -14.60786 -14.52363 -14.22180 -14.10642 -13.68825 -13.58827 -13.52362 -13.34720 -13.18966 -13.06008 -12.91361 -12.88111 -12.43445 -12.36356 -12.31001 -12.12706 -11.87880 -11.70564 -11.65015 -11.04210 -10.95214 -10.65785 -9.80416 -9.34738 -8.06637 -5.40664 1.32690 1.39415 1.43804 1.44588 1.50910 1.82703 2.44793 2.57101 2.72948 2.91070 2.97317 3.24751 3.34929 3.50113 3.62244 3.69770 3.89055 3.99363 4.01057 4.06023 4.10753 4.12953 4.26220 4.30078 4.41713 4.47474 4.67461 4.70568 4.73449 4.76611 4.82003 4.89577 4.91317 4.94612 5.00138 5.19027 5.29202 5.32910 5.70606 6.13519 6.16457 6.36447 7.03257 7.04509 7.77713 7.96805 9.15047 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.004276 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.405501 B = 6546.838016 C = 8679.887713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.396 6.396 5 C 0.053 3.947 6 C 0.522 3.478 7 O -0.574 6.574 8 N -0.612 5.612 9 C 0.112 3.888 10 C -0.102 4.102 11 H 0.127 0.873 12 C 0.155 3.845 13 N -0.755 5.755 14 C -0.235 4.235 15 H 0.052 0.948 16 C -0.062 4.062 17 N -0.983 5.983 18 Si 0.952 3.048 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.242 1.242 22 C -0.127 4.127 23 H 0.180 0.820 24 C 0.460 3.540 25 F -0.176 7.176 26 F -0.185 7.185 27 F -0.189 7.189 28 C 0.100 3.900 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.081 0.919 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 5.133 -25.311 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.206 4.206 4 O -0.316 6.316 5 C -0.026 4.026 6 C 0.311 3.689 7 O -0.453 6.453 8 N -0.347 5.347 9 C -0.010 4.010 10 C -0.122 4.122 11 H 0.145 0.855 12 C 0.029 3.971 13 N -0.401 5.401 14 C -0.366 4.366 15 H 0.070 0.930 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.779 3.221 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.166 1.166 22 C -0.147 4.147 23 H 0.198 0.802 24 C 0.406 3.594 25 F -0.157 7.157 26 F -0.166 7.166 27 F -0.170 7.170 28 C -0.022 4.022 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.140 0.860 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.213 5.637 -24.671 29.025 hybrid contribution -0.383 -0.221 1.222 1.300 sum 13.830 5.416 -23.449 27.757 Atomic orbital electron populations 1.22342 0.95748 1.02516 1.02912 1.22439 0.93980 0.94351 0.87619 1.21888 1.01766 0.93979 1.02979 1.88049 1.87035 1.18726 1.37770 1.22335 1.02888 0.83402 0.94010 1.20670 0.77082 0.80526 0.90593 1.90736 1.53546 1.60937 1.40041 1.48306 1.66154 1.06221 1.14006 1.22378 1.00251 0.89568 0.88804 1.22698 0.97533 0.97542 0.94392 0.85503 1.21153 0.94077 0.98499 0.83340 1.42644 1.05605 1.88020 1.03810 1.18962 0.86632 1.39855 0.91140 0.92977 1.25509 0.99578 1.02394 0.97853 1.69884 1.24322 1.58747 1.10418 0.85454 0.80552 0.77818 0.78292 1.21338 1.21804 1.16551 1.23641 1.02500 0.92874 0.95677 0.80226 1.20437 0.80448 0.82750 0.75773 1.93204 1.94957 1.96270 1.31267 1.93200 1.93655 1.47461 1.82296 1.93211 1.39182 1.91095 1.93539 1.22306 1.04262 0.85314 0.90278 0.92568 0.93663 0.89155 0.89084 0.92046 0.88604 0.93456 0.86039 0.88694 0.87625 0.92872 0.96111 0.94744 0.80042 0.93283 0.90038 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 9.53 71.98 0.69 -2.15 16 2 C 0.07 1.18 3.34 30.60 0.10 1.29 16 3 C -0.15 -2.18 9.56 71.98 0.69 -1.50 16 4 O -0.40 -10.04 9.52 -129.94 -1.24 -11.27 16 5 C 0.05 1.04 5.42 71.24 0.39 1.42 16 6 C 0.52 15.09 7.93 87.66 0.69 15.79 16 7 O -0.57 -23.56 16.75 16.01 0.27 -23.29 16 8 N -0.61 -14.27 3.30 -811.34 -2.68 -16.95 16 9 C 0.11 2.88 6.31 86.94 0.55 3.43 16 10 C -0.10 -2.45 2.76 -9.32 -0.03 -2.48 16 11 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 12 C 0.16 5.73 4.11 86.38 0.36 6.08 16 13 N -0.75 -35.80 5.05 -343.44 -1.74 -37.54 16 14 C -0.23 -13.94 10.47 84.04 0.88 -13.06 16 15 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 16 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 17 N -0.98 -65.17 13.97 21.65 0.30 -64.87 16 18 Si 0.95 46.98 27.73 68.60 1.90 48.88 16 19 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.24 -10.37 6.52 99.48 0.65 -9.73 16 22 C -0.13 -1.88 2.90 -9.61 -0.03 -1.91 16 23 H 0.18 1.08 8.14 -2.38 -0.02 1.06 16 24 C 0.46 9.07 2.35 71.98 0.17 9.24 16 25 F -0.18 -2.90 17.23 44.97 0.77 -2.12 16 26 F -0.18 -4.31 16.49 44.97 0.74 -3.57 16 27 F -0.19 -5.04 12.65 44.97 0.57 -4.47 16 28 C 0.10 1.41 5.60 86.73 0.49 1.90 16 29 H 0.06 0.90 7.87 -2.39 -0.02 0.89 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.91 7.79 -2.39 -0.02 0.90 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.12 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.10 1.56 7.87 -2.39 -0.02 1.54 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.88 7.42 -2.39 -0.02 1.86 16 40 H 0.02 0.84 7.37 -2.39 -0.02 0.82 16 41 H 0.03 1.34 5.63 -2.39 -0.01 1.32 16 42 H 0.37 16.37 5.25 -92.71 -0.49 15.89 16 43 H 0.26 16.28 8.31 -92.72 -0.77 15.50 16 44 H 0.08 1.22 7.11 -2.39 -0.02 1.21 16 45 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -86.91 373.26 4.79 -82.12 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.47 Total: 18.34 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.41 Total: 14.74 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.11 Total: -119.35 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.97 Total: -34.56 kcal Atomic # 9 Polarization: -12.25 SS G_CDS: 2.09 Total: -10.16 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.88 kcal Total: -86.91 4.79 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.279 kcal (2) G-P(sol) polarization free energy of solvation -86.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds