Wall clock time and date at job start Tue Mar 31 2020 21:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42896 * 114.00446 * 209.99746 * 4 2 1 6 6 C 1.50700 * 109.47766 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99519 * 0.02562 * 6 5 4 8 8 N 1.34766 * 120.00402 * 179.97438 * 6 5 4 9 9 C 1.48146 * 127.83677 * 359.68831 * 8 6 5 10 10 C 1.54796 * 104.41870 * 140.36715 * 9 8 6 11 11 H 1.09001 * 110.60989 * 265.17644 * 10 9 8 12 12 C 1.53003 * 110.20217 * 142.94187 * 10 9 8 13 13 F 1.39899 * 109.46804 * 304.59097 * 12 10 9 14 14 F 1.39900 * 109.47071 * 64.59087 * 12 10 9 15 15 F 1.39895 * 109.47117 * 184.59161 * 12 10 9 16 16 C 1.54279 * 104.92028 * 24.15848 * 10 9 8 17 17 H 1.09000 * 110.42908 * 118.72718 * 16 10 9 18 18 C 1.52998 * 110.34497 * 240.94009 * 16 10 9 19 19 N 1.46510 * 109.47079 * 181.99492 * 18 16 10 20 20 C 1.36933 * 119.99828 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00283 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47447 * 89.99891 * 24 22 20 26 26 H 1.48505 * 109.46888 * 209.99822 * 24 22 20 27 27 H 1.48497 * 109.47385 * 329.99515 * 24 22 20 28 28 C 1.48149 * 127.83888 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47115 * 300.00419 * 5 4 2 37 37 H 1.09000 * 109.46923 * 59.99773 * 5 4 2 38 38 H 1.09005 * 110.40945 * 259.19178 * 9 8 6 39 39 H 1.09003 * 110.41104 * 21.62569 * 9 8 6 40 40 H 1.08998 * 109.47438 * 301.99022 * 18 16 10 41 41 H 1.09002 * 109.47342 * 61.99323 * 18 16 10 42 42 H 0.96997 * 119.99697 * 359.97438 * 19 18 16 43 43 H 0.97002 * 120.00023 * 180.02562 * 23 22 20 44 44 H 1.08996 * 110.40960 * 338.37188 * 28 8 6 45 45 H 1.09000 * 110.40644 * 100.69310 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2660 -1.3244 -0.9887 6 6 3.6694 -1.9987 -2.2747 7 8 2.9492 -1.9284 -3.2480 8 7 4.8307 -2.6789 -2.3434 9 6 5.8374 -2.8688 -1.2733 10 6 6.3004 -4.3369 -1.4357 11 1 5.7355 -4.9929 -0.7733 12 6 7.7985 -4.4535 -1.1471 13 9 8.5023 -3.5691 -1.9715 14 9 8.0413 -4.1349 0.1933 15 9 8.2214 -5.7629 -1.3992 16 6 6.0095 -4.6844 -2.9104 17 1 6.9329 -4.9391 -3.4305 18 6 5.0141 -5.8429 -2.9976 19 7 4.7883 -6.1881 -4.4034 20 6 3.9294 -7.2034 -4.7297 21 1 3.4181 -7.7496 -3.9507 22 6 3.7150 -7.5300 -6.0617 23 7 4.3369 -6.8634 -7.0110 24 14 2.5428 -8.9146 -6.5068 25 1 1.1730 -8.3677 -6.6784 26 1 2.9849 -9.5491 -7.7747 27 1 2.5388 -9.9281 -5.4214 28 6 5.3931 -3.4016 -3.5080 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 4.0199 -0.5873 -0.7125 37 1 3.1809 -2.0706 -0.1988 38 1 6.6753 -2.1858 -1.4140 39 1 5.3838 -2.7183 -0.2936 40 1 5.4167 -6.7083 -2.4712 41 1 4.0702 -5.5463 -2.5401 42 1 5.2472 -5.6973 -5.1030 43 1 4.1868 -7.0914 -7.9418 44 1 4.6038 -3.6537 -4.2162 45 1 6.1610 -2.7999 -3.9941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677048458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:44 Heat of formation + Delta-G solvation = -219.524925 kcal Electronic energy + Delta-G solvation = -30773.836372 eV Core-core repulsion = 25990.976442 eV Total energy + Delta-G solvation = -4782.859930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.21095 -47.71067 -47.63892 -40.22046 -38.69961 -37.48712 -34.68954 -33.04976 -32.56456 -31.18548 -29.47391 -28.02141 -27.42569 -25.87884 -25.20756 -23.45666 -21.82228 -21.60575 -20.37562 -19.68047 -18.58246 -18.23025 -17.84326 -17.30257 -17.17197 -16.69066 -16.24111 -15.61341 -15.09609 -14.75393 -14.70235 -14.52219 -14.48966 -14.10860 -14.07635 -13.87827 -13.77886 -13.76546 -13.38278 -13.36437 -13.27581 -12.94380 -12.65968 -12.49778 -12.43249 -12.26317 -11.93988 -11.82584 -11.68502 -11.65602 -11.11383 -11.00571 -10.89920 -10.76245 -10.57915 -10.05844 -9.91661 -9.75158 -9.70587 -8.90045 -8.79333 -6.95233 -5.76133 -3.05926 2.39879 2.59477 2.70235 3.46155 3.50699 3.51304 3.52334 3.68265 3.74954 3.85234 4.31177 4.46422 4.52647 4.62979 4.67163 4.72632 4.81616 4.82001 4.88006 4.97835 5.04430 5.12889 5.19058 5.29649 5.40487 5.49758 5.54574 5.56661 5.58919 5.65797 5.88492 5.93167 5.95184 6.00451 6.18809 6.30615 6.56439 6.67318 6.89400 7.44525 7.70128 8.16859 8.41451 9.53266 10.06956 10.41604 11.46526 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.003961 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.618148 B = 7067.641816 C =10062.293252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.356 6.356 5 C 0.050 3.950 6 C 0.535 3.465 7 O -0.502 6.502 8 N -0.620 5.620 9 C 0.109 3.891 10 C -0.149 4.149 11 H 0.130 0.870 12 C 0.461 3.539 13 F -0.180 7.180 14 F -0.186 7.186 15 F -0.174 7.174 16 C -0.101 4.101 17 H 0.099 0.901 18 C 0.164 3.836 19 N -0.729 5.729 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.112 3.888 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.109 0.891 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 14.437 19.833 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.274 6.274 5 C -0.030 4.030 6 C 0.322 3.678 7 O -0.375 6.375 8 N -0.357 5.357 9 C -0.015 4.015 10 C -0.170 4.170 11 H 0.148 0.852 12 C 0.407 3.593 13 F -0.161 7.161 14 F -0.167 7.167 15 F -0.156 7.156 16 C -0.121 4.121 17 H 0.117 0.883 18 C 0.037 3.963 19 N -0.374 5.374 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.010 4.010 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.127 0.873 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.194 14.415 19.124 24.160 hybrid contribution 0.129 -0.699 -0.101 0.718 sum 3.324 13.716 19.022 23.686 Atomic orbital electron populations 1.21856 0.93211 1.03087 1.02589 1.22174 0.95456 0.92411 0.87836 1.22317 1.01451 0.96786 1.02805 1.88091 1.34528 1.69635 1.35170 1.22188 0.88181 0.96914 0.95728 1.19773 0.79437 0.78715 0.89861 1.90807 1.50170 1.58781 1.37697 1.48796 1.19282 1.53439 1.14170 1.22388 0.93006 0.93489 0.92646 1.23587 0.89776 1.00929 1.02699 0.85209 1.20342 0.91169 0.73987 0.73843 1.93183 1.81485 1.69027 1.72439 1.93177 1.95680 1.92726 1.35136 1.93233 1.91665 1.36839 1.93830 1.22397 1.01729 0.97244 0.90722 0.88288 1.20657 0.94290 0.92254 0.89137 1.42288 1.53703 1.41122 1.00297 1.19161 1.17874 1.08745 0.91539 0.91187 1.24737 1.00430 0.99841 0.95664 1.69650 1.45963 1.42988 0.99300 0.86180 0.80705 0.81653 0.77576 1.21635 1.21744 1.20763 1.22521 0.99188 0.90405 0.88889 0.91729 0.91197 0.91518 0.92064 0.91510 0.91543 0.92536 0.90494 0.90304 0.89618 0.89044 0.95677 0.95882 0.78129 0.93429 0.87291 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.56 37.16 0.36 -0.88 16 2 C 0.08 0.69 3.34 -26.73 -0.09 0.61 16 3 C -0.18 -1.30 9.53 37.16 0.35 -0.94 16 4 O -0.36 -4.60 9.52 -55.14 -0.52 -5.13 16 5 C 0.05 0.54 5.20 36.01 0.19 0.72 16 6 C 0.53 8.13 7.99 -10.99 -0.09 8.04 16 7 O -0.50 -10.42 16.77 -14.35 -0.24 -10.66 16 8 N -0.62 -8.21 3.31 -169.07 -0.56 -8.77 16 9 C 0.11 0.99 6.27 -2.19 -0.01 0.98 16 10 C -0.15 -1.59 2.75 -89.00 -0.24 -1.84 16 11 H 0.13 1.24 7.71 -51.93 -0.40 0.84 16 12 C 0.46 5.00 2.53 37.16 0.09 5.10 16 13 F -0.18 -2.04 16.04 2.25 0.04 -2.01 16 14 F -0.19 -1.85 17.17 2.25 0.04 -1.81 16 15 F -0.17 -2.25 16.93 2.25 0.04 -2.21 16 16 C -0.10 -1.48 2.42 -89.24 -0.22 -1.70 16 17 H 0.10 1.49 7.41 -51.93 -0.38 1.10 16 18 C 0.16 3.14 5.41 -4.04 -0.02 3.12 16 19 N -0.73 -18.16 5.12 -59.90 -0.31 -18.47 16 20 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 24 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.11 1.72 6.39 -2.42 -0.02 1.70 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.08 0.60 7.87 -51.93 -0.41 0.20 16 37 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 38 H 0.09 0.69 7.21 -51.93 -0.37 0.31 16 39 H 0.09 0.56 7.31 -51.93 -0.38 0.18 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 10.01 7.39 -40.82 -0.30 9.71 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.11 2.16 7.07 -51.93 -0.37 1.79 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -34.88 382.47 -6.77 -41.65 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.77 Total: 3.96 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 0.06 Total: 7.55 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.14 Total: -54.83 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.77 Total: -15.78 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.11 Total: -6.03 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.88 -6.77 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.876 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds