Wall clock time and date at job start Tue Mar 31 2020 21:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.42896 * 114.00446 * 209.99746 * 4 2 1 6 6 C 1.50700 * 109.47766 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99519 * 0.02562 * 6 5 4 8 8 N 1.34766 * 120.00402 * 179.97438 * 6 5 4 9 9 C 1.48146 * 127.83677 * 359.68831 * 8 6 5 10 10 C 1.54796 * 104.41870 * 140.36715 * 9 8 6 11 11 H 1.09001 * 110.60989 * 265.17644 * 10 9 8 12 12 C 1.53003 * 110.20217 * 142.94187 * 10 9 8 13 13 F 1.39899 * 109.46804 * 304.59097 * 12 10 9 14 14 F 1.39900 * 109.47071 * 64.59087 * 12 10 9 15 15 F 1.39895 * 109.47117 * 184.59161 * 12 10 9 16 16 C 1.54279 * 104.92028 * 24.15848 * 10 9 8 17 17 H 1.09000 * 110.42908 * 118.72718 * 16 10 9 18 18 C 1.52998 * 110.34497 * 240.94009 * 16 10 9 19 19 N 1.46510 * 109.47079 * 181.99492 * 18 16 10 20 20 C 1.36933 * 119.99828 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00283 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47447 * 89.99891 * 24 22 20 26 26 H 1.48505 * 109.46888 * 209.99822 * 24 22 20 27 27 H 1.48497 * 109.47385 * 329.99515 * 24 22 20 28 28 C 1.48149 * 127.83888 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47115 * 300.00419 * 5 4 2 37 37 H 1.09000 * 109.46923 * 59.99773 * 5 4 2 38 38 H 1.09005 * 110.40945 * 259.19178 * 9 8 6 39 39 H 1.09003 * 110.41104 * 21.62569 * 9 8 6 40 40 H 1.08998 * 109.47438 * 301.99022 * 18 16 10 41 41 H 1.09002 * 109.47342 * 61.99323 * 18 16 10 42 42 H 0.96997 * 119.99697 * 359.97438 * 19 18 16 43 43 H 0.97002 * 120.00023 * 180.02562 * 23 22 20 44 44 H 1.08996 * 110.40960 * 338.37188 * 28 8 6 45 45 H 1.09000 * 110.40644 * 100.69310 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2660 -1.3244 -0.9887 6 6 3.6694 -1.9987 -2.2747 7 8 2.9492 -1.9284 -3.2480 8 7 4.8307 -2.6789 -2.3434 9 6 5.8374 -2.8688 -1.2733 10 6 6.3004 -4.3369 -1.4357 11 1 5.7355 -4.9929 -0.7733 12 6 7.7985 -4.4535 -1.1471 13 9 8.5023 -3.5691 -1.9715 14 9 8.0413 -4.1349 0.1933 15 9 8.2214 -5.7629 -1.3992 16 6 6.0095 -4.6844 -2.9104 17 1 6.9329 -4.9391 -3.4305 18 6 5.0141 -5.8429 -2.9976 19 7 4.7883 -6.1881 -4.4034 20 6 3.9294 -7.2034 -4.7297 21 1 3.4181 -7.7496 -3.9507 22 6 3.7150 -7.5300 -6.0617 23 7 4.3369 -6.8634 -7.0110 24 14 2.5428 -8.9146 -6.5068 25 1 1.1730 -8.3677 -6.6784 26 1 2.9849 -9.5491 -7.7747 27 1 2.5388 -9.9281 -5.4214 28 6 5.3931 -3.4016 -3.5080 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 4.0199 -0.5873 -0.7125 37 1 3.1809 -2.0706 -0.1988 38 1 6.6753 -2.1858 -1.4140 39 1 5.3838 -2.7183 -0.2936 40 1 5.4167 -6.7083 -2.4712 41 1 4.0702 -5.5463 -2.5401 42 1 5.2472 -5.6973 -5.1030 43 1 4.1868 -7.0914 -7.9418 44 1 4.6038 -3.6537 -4.2162 45 1 6.1610 -2.7999 -3.9941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677048458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:43 Heat of formation + Delta-G solvation = -242.820851 kcal Electronic energy + Delta-G solvation = -30774.846560 eV Core-core repulsion = 25990.976442 eV Total energy + Delta-G solvation = -4783.870117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.08734 -48.56230 -48.54501 -41.31848 -39.62264 -38.59453 -36.47110 -34.14490 -33.64483 -32.76044 -30.79748 -29.13888 -28.05935 -26.98983 -26.50471 -25.12391 -23.13332 -22.24662 -21.53967 -20.73853 -19.55514 -19.27681 -19.09374 -18.66402 -18.17739 -17.71246 -17.17871 -16.67090 -16.57548 -16.12644 -15.67929 -15.49566 -15.38313 -15.33636 -15.18024 -15.05744 -14.96075 -14.70432 -14.67437 -14.41190 -14.35608 -13.92216 -13.71785 -13.47348 -13.27815 -13.15762 -13.04438 -12.97056 -12.84983 -12.79492 -12.52662 -12.34777 -12.31162 -12.12626 -11.92060 -11.70781 -11.62492 -11.00192 -10.92394 -10.63361 -9.92962 -9.03835 -7.97570 -5.26719 1.42290 1.44782 1.47577 1.51360 1.55166 1.79046 2.52188 2.67598 2.76114 2.92092 2.96265 3.35773 3.40426 3.59902 3.64511 3.78339 3.93504 4.02475 4.09213 4.10295 4.16455 4.25519 4.28465 4.32173 4.39459 4.44742 4.65659 4.70761 4.77103 4.79280 4.86366 4.92374 4.94045 4.95839 5.03391 5.19875 5.30905 5.35770 5.46261 6.17984 6.24174 6.42928 7.06262 7.30920 8.04613 8.26881 9.25897 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.003961 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.618148 B = 7067.641816 C =10062.293252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.398 6.398 5 C 0.056 3.944 6 C 0.525 3.475 7 O -0.576 6.576 8 N -0.616 5.616 9 C 0.109 3.891 10 C -0.139 4.139 11 H 0.149 0.851 12 C 0.468 3.532 13 F -0.183 7.183 14 F -0.174 7.174 15 F -0.188 7.188 16 C -0.091 4.091 17 H 0.095 0.905 18 C 0.165 3.835 19 N -0.744 5.744 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.973 3.027 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.266 1.266 28 C 0.112 3.888 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.034 0.966 41 H 0.017 0.983 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 14.982 23.561 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.318 6.318 5 C -0.023 4.023 6 C 0.315 3.685 7 O -0.454 6.454 8 N -0.351 5.351 9 C -0.013 4.013 10 C -0.160 4.160 11 H 0.166 0.834 12 C 0.414 3.586 13 F -0.164 7.164 14 F -0.155 7.155 15 F -0.169 7.169 16 C -0.111 4.111 17 H 0.113 0.887 18 C 0.039 3.961 19 N -0.387 5.387 20 C -0.378 4.378 21 H 0.093 0.907 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.191 1.191 28 C -0.011 4.011 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.155 0.845 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.011 14.955 22.945 27.681 hybrid contribution -0.086 -0.838 -1.189 1.458 sum 3.925 14.117 21.756 26.230 Atomic orbital electron populations 1.21910 0.93502 1.02496 1.03032 1.22443 0.95396 0.93131 0.87529 1.22302 1.01935 0.95882 1.02933 1.88061 1.35641 1.70406 1.37691 1.22330 0.88518 0.98277 0.93208 1.20818 0.78830 0.78072 0.90755 1.90771 1.52512 1.61606 1.40534 1.48842 1.19556 1.52200 1.14522 1.22759 0.92822 0.92420 0.93290 1.23539 0.90198 1.02592 0.99685 0.83365 1.20211 0.90815 0.73377 0.74201 1.93187 1.81578 1.68995 1.72642 1.93204 1.95588 1.92556 1.34182 1.93214 1.91804 1.37942 1.93983 1.22136 0.99987 0.94995 0.93979 0.88696 1.20773 0.95202 0.94182 0.85968 1.42505 1.53140 1.40428 1.02581 1.19587 1.17570 1.08886 0.91794 0.90661 1.25574 1.02632 1.02668 0.95810 1.69809 1.47878 1.44856 0.99259 0.85153 0.78210 0.79088 0.77401 1.21864 1.21948 1.19052 1.22306 0.97893 0.91569 0.89313 0.92824 0.88512 0.93316 0.89297 0.93435 0.89358 0.91720 0.86754 0.86955 0.87565 0.84499 0.94844 0.96551 0.79322 0.93987 0.92578 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.56 71.98 0.69 -1.64 16 2 C 0.07 1.09 3.34 30.59 0.10 1.19 16 3 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 4 O -0.40 -9.85 9.52 -129.94 -1.24 -11.08 16 5 C 0.06 1.03 5.20 71.24 0.37 1.40 16 6 C 0.53 15.69 7.99 87.66 0.70 16.39 16 7 O -0.58 -25.20 16.77 16.00 0.27 -24.93 16 8 N -0.62 -15.46 3.31 -807.22 -2.67 -18.13 16 9 C 0.11 1.54 6.27 86.68 0.54 2.08 16 10 C -0.14 -2.55 2.75 -9.75 -0.03 -2.58 16 11 H 0.15 2.25 7.71 -2.39 -0.02 2.23 16 12 C 0.47 8.71 2.53 71.98 0.18 8.89 16 13 F -0.18 -3.65 16.04 44.97 0.72 -2.93 16 14 F -0.17 -2.74 17.17 44.97 0.77 -1.97 16 15 F -0.19 -4.45 16.93 44.97 0.76 -3.69 16 16 C -0.09 -2.62 2.42 -9.90 -0.02 -2.64 16 17 H 0.09 2.83 7.41 -2.39 -0.02 2.81 16 18 C 0.17 6.32 5.41 86.38 0.47 6.79 16 19 N -0.74 -38.15 5.12 -343.44 -1.76 -39.91 16 20 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 24 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.11 3.52 6.39 86.52 0.55 4.07 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.85 7.79 -2.39 -0.02 0.83 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 36 H 0.11 1.25 7.87 -2.39 -0.02 1.23 16 37 H 0.11 1.31 7.90 -2.39 -0.02 1.30 16 38 H 0.11 1.18 7.21 -2.38 -0.02 1.16 16 39 H 0.14 0.80 7.31 -2.39 -0.02 0.78 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.37 20.45 7.39 -92.71 -0.68 19.77 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.06 2.39 7.07 -2.39 -0.02 2.37 16 45 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -81.70 382.47 5.04 -76.67 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.32 Total: 21.63 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.55 Total: 15.32 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -4.15 Total: -118.60 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.97 Total: -36.01 kcal Atomic # 9 Polarization: -10.85 SS G_CDS: 2.25 Total: -8.59 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -81.70 5.04 -76.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.155 kcal (2) G-P(sol) polarization free energy of solvation -81.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds