Wall clock time and date at job start Tue Mar 31 2020 21:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47517 * 2 1 4 4 O 1.42902 * 109.46922 * 120.00057 * 2 1 3 5 5 C 1.42898 * 114.00186 * 149.99499 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.47480 * 127.03464 * 180.02562 * 8 6 5 10 10 C 1.54004 * 107.08278 * 154.51345 * 9 8 6 11 11 H 1.09001 * 110.33097 * 242.41053 * 10 9 8 12 12 C 1.53003 * 110.32936 * 120.29803 * 10 9 8 13 13 N 1.46500 * 109.46708 * 66.45195 * 12 10 9 14 14 C 1.36937 * 120.00148 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99660 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00731 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00476 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99611 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47134 * 90.00211 * 18 16 14 20 20 H 1.48498 * 109.47305 * 210.00167 * 18 16 14 21 21 H 1.48503 * 109.47320 * 330.00542 * 18 16 14 22 22 C 1.54622 * 105.04514 * 1.30646 * 10 9 8 23 23 H 1.08998 * 110.73329 * 263.51044 * 22 10 9 24 24 C 1.52998 * 110.73765 * 140.36994 * 22 10 9 25 25 F 1.39901 * 109.47682 * 59.99837 * 24 22 10 26 26 F 1.39899 * 109.46969 * 180.02562 * 24 22 10 27 27 F 1.39906 * 109.47175 * 299.99342 * 24 22 10 28 28 C 1.48122 * 127.03173 * 359.67709 * 8 6 5 29 29 H 1.09002 * 109.46774 * 300.00670 * 1 2 3 30 30 H 1.09005 * 109.47009 * 59.99463 * 1 2 3 31 31 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46984 * 239.99465 * 2 1 3 33 33 H 1.08997 * 109.46833 * 60.00170 * 3 2 1 34 34 H 1.09001 * 109.46890 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46986 * 299.99733 * 3 2 1 36 36 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 37 37 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 38 38 H 1.09000 * 109.91353 * 273.87178 * 9 8 6 39 39 H 1.08993 * 109.91301 * 35.15588 * 9 8 6 40 40 H 1.08991 * 109.47542 * 186.45421 * 12 10 9 41 41 H 1.08998 * 109.47241 * 306.45980 * 12 10 9 42 42 H 0.96998 * 120.00400 * 0.02562 * 13 12 10 43 43 H 0.97000 * 120.00055 * 179.97438 * 17 16 14 44 44 H 1.09004 * 110.66318 * 337.77936 * 28 8 6 45 45 H 1.09006 * 110.65815 * 100.88999 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 6 3.6691 -1.9990 2.2747 7 8 2.9490 -1.9287 3.2480 8 7 4.8305 -2.6794 2.3434 9 6 5.3736 -3.3935 3.5140 10 6 6.3071 -4.4953 2.9787 11 1 5.9332 -5.4791 3.2623 12 6 7.7272 -4.2938 3.5111 13 7 7.7392 -4.5019 4.9611 14 6 8.9088 -4.3735 5.6617 15 1 9.8225 -4.1191 5.1451 16 6 8.9203 -4.5712 7.0356 17 7 10.0446 -4.4482 7.7088 18 14 7.3401 -5.0118 7.9290 19 1 7.1887 -6.4886 7.9678 20 1 7.3914 -4.4829 9.3157 21 1 6.1839 -4.4144 7.2138 22 6 6.2794 -4.3328 1.4413 23 1 5.5610 -5.0195 0.9936 24 6 7.6734 -4.5480 0.8486 25 9 8.1180 -5.8378 1.1585 26 9 7.6181 -4.3946 -0.5409 27 9 8.5590 -3.6077 1.3862 28 6 5.8190 -2.8691 1.2567 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1807 -2.0708 0.1987 37 1 4.0199 -0.5876 0.7126 38 1 5.9365 -2.7028 4.1419 39 1 4.5609 -3.8411 4.0858 40 1 8.3984 -5.0090 3.0358 41 1 8.0589 -3.2799 3.2869 42 1 6.9187 -4.7307 5.4251 43 1 10.0525 -4.5860 8.6689 44 1 5.3498 -2.7343 0.2821 45 1 6.6595 -2.1856 1.3779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677048459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:47 Heat of formation + Delta-G solvation = -204.824150 kcal Electronic energy + Delta-G solvation = -30964.206037 eV Core-core repulsion = 26181.983580 eV Total energy + Delta-G solvation = -4782.222457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.24223 -47.71837 -47.57779 -40.41480 -38.84386 -37.69154 -34.91327 -33.17121 -32.70813 -31.33318 -29.86316 -28.23903 -27.53909 -25.94303 -25.43080 -23.27672 -21.95883 -21.71978 -20.49491 -19.85277 -18.56953 -18.26750 -17.97725 -17.50924 -17.10222 -16.88019 -16.38510 -15.91634 -15.30101 -14.98585 -14.72925 -14.66541 -14.44121 -14.25402 -14.02783 -14.00211 -13.84545 -13.71259 -13.54554 -13.40390 -13.13798 -12.79526 -12.75120 -12.63269 -12.54315 -12.29894 -12.25896 -12.00265 -11.93653 -11.80061 -11.26335 -11.11716 -10.96775 -10.82089 -10.60840 -10.11440 -10.04470 -9.94975 -9.60277 -8.96483 -8.91848 -7.27884 -5.78042 -3.15104 2.27028 2.38688 2.68498 3.37897 3.40301 3.42209 3.46204 3.58091 3.69697 3.87596 4.20802 4.42732 4.46103 4.54134 4.58230 4.61504 4.64256 4.70430 4.77279 4.85333 4.89959 5.01914 5.08725 5.21608 5.29828 5.39147 5.41260 5.45489 5.48076 5.53827 5.62190 5.79929 5.83706 5.86744 5.91889 6.05413 6.42476 6.54189 6.75906 7.23273 7.95073 7.96328 8.39664 9.17470 9.89502 10.07619 11.40034 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.003418 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.388838 B = 8190.715699 C =10091.477080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.049 3.951 6 C 0.534 3.466 7 O -0.511 6.511 8 N -0.619 5.619 9 C 0.114 3.886 10 C -0.106 4.106 11 H 0.101 0.899 12 C 0.145 3.855 13 N -0.753 5.753 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.148 4.148 23 H 0.127 0.873 24 C 0.465 3.535 25 F -0.172 7.172 26 F -0.187 7.187 27 F -0.168 7.168 28 C 0.106 3.894 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 5.761 -22.959 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.235 4.235 4 O -0.276 6.276 5 C -0.031 4.031 6 C 0.321 3.679 7 O -0.385 6.385 8 N -0.356 5.356 9 C -0.008 4.008 10 C -0.126 4.126 11 H 0.119 0.881 12 C 0.018 3.982 13 N -0.399 5.399 14 C -0.375 4.375 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.169 4.169 23 H 0.145 0.855 24 C 0.410 3.590 25 F -0.153 7.153 26 F -0.169 7.169 27 F -0.149 7.149 28 C -0.017 4.017 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.012 5.922 -22.193 27.440 hybrid contribution -0.510 -0.465 0.365 0.781 sum -15.522 5.456 -21.828 27.334 Atomic orbital electron populations 1.21855 0.93210 1.02931 1.02694 1.22186 0.95397 0.92544 0.87734 1.22322 1.01613 0.96649 1.02876 1.88074 1.34471 1.69683 1.35361 1.22197 0.88365 0.97075 0.95456 1.19835 0.79424 0.78677 0.89916 1.90769 1.50779 1.59197 1.37766 1.48655 1.19577 1.53330 1.14016 1.22235 0.96850 0.93826 0.87887 1.22459 0.99222 1.00669 0.90200 0.88057 1.21424 0.90652 0.99973 0.86197 1.42669 1.08625 1.86407 1.02192 1.19003 0.87566 1.40613 0.90288 0.89105 1.24661 0.96457 1.01594 0.96192 1.69695 1.24864 1.55966 1.07443 0.86587 0.84128 0.78393 0.79658 1.21031 1.21644 1.20202 1.23519 0.92906 1.01048 0.99382 0.85487 1.20117 0.88652 0.74661 0.75546 1.93210 1.90859 1.38844 1.92428 1.93175 1.96818 1.95445 1.31440 1.93238 1.71463 1.65107 1.85126 1.22449 0.93542 0.93924 0.91819 0.91522 0.91103 0.91869 0.92016 0.91480 0.92401 0.91461 0.90269 0.90164 0.89197 0.89910 0.94144 0.93612 0.80659 0.92994 0.88905 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.56 37.16 0.36 -0.66 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 3 C -0.18 -1.18 9.53 37.16 0.35 -0.83 16 4 O -0.36 -4.07 9.52 -55.14 -0.52 -4.59 16 5 C 0.05 0.46 5.16 36.01 0.19 0.64 16 6 C 0.53 7.12 7.97 -10.98 -0.09 7.03 16 7 O -0.51 -9.31 16.84 -14.35 -0.24 -9.55 16 8 N -0.62 -7.39 3.29 -170.00 -0.56 -7.95 16 9 C 0.11 1.62 6.30 -2.98 -0.02 1.60 16 10 C -0.11 -1.42 2.85 -89.24 -0.25 -1.67 16 11 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 12 C 0.14 2.59 3.86 -4.04 -0.02 2.58 16 13 N -0.75 -17.25 5.17 -59.91 -0.31 -17.56 16 14 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 18 Si 0.88 22.08 27.74 -169.99 -4.71 17.36 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 22 C -0.15 -1.45 3.03 -88.95 -0.27 -1.72 16 23 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 24 C 0.46 5.29 2.40 37.16 0.09 5.38 16 25 F -0.17 -2.30 15.48 2.25 0.03 -2.26 16 26 F -0.19 -1.90 17.23 2.25 0.04 -1.86 16 27 F -0.17 -2.25 12.77 2.25 0.03 -2.22 16 28 C 0.11 0.93 6.26 -2.33 -0.01 0.92 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.37 7.87 -51.93 -0.41 -0.03 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.51 7.84 -51.93 -0.41 0.10 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.09 1.49 7.61 -51.93 -0.40 1.09 16 39 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.04 0.76 5.40 -51.93 -0.28 0.48 16 41 H 0.05 0.84 6.68 -51.93 -0.35 0.50 16 42 H 0.36 8.05 5.37 -40.82 -0.22 7.83 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.09 0.50 7.23 -51.93 -0.38 0.13 16 45 H 0.09 0.84 7.32 -51.93 -0.38 0.46 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -35.26 371.36 -6.49 -41.75 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.59 Total: 2.91 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.02 Total: 6.87 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.09 Total: -53.99 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.77 Total: -14.14 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.10 Total: -6.35 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.26 -6.49 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677048459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.079 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds