Wall clock time and date at job start Tue Mar 31 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52454 * 2 1 4 4 C 1.53042 * 109.50032 * 239.91976 * 2 1 3 5 5 C 1.53038 * 109.53609 * 301.41253 * 4 2 1 6 6 C 1.53183 * 109.31408 * 298.63556 * 5 4 2 7 7 N 1.46923 * 108.78097 * 54.63260 * 6 5 4 8 8 C 1.34775 * 120.63345 * 126.36876 * 7 6 5 9 9 O 1.21565 * 120.00040 * 188.19636 * 8 7 6 10 10 C 1.47750 * 119.99952 * 8.19685 * 8 7 6 11 11 C 1.39355 * 124.11777 * 187.41979 * 10 8 7 12 12 N 1.30095 * 112.14534 * 179.97438 * 11 10 8 13 13 S 1.55925 * 108.75437 * 0.02562 * 12 11 10 14 14 N 1.31500 * 124.11464 * 7.12500 * 10 8 7 15 15 C 1.46922 * 118.73833 * 306.39733 * 7 6 5 16 16 H 1.09005 * 109.58933 * 293.67719 * 15 7 6 17 17 C 1.52999 * 109.58805 * 173.39053 * 15 7 6 18 18 C 1.53004 * 109.46981 * 178.52510 * 17 15 7 19 19 C 1.53007 * 109.46922 * 176.48063 * 18 17 15 20 20 N 1.46498 * 109.46943 * 180.02562 * 19 18 17 21 21 C 1.36942 * 119.99839 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99944 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99787 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47327 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47211 * 119.99877 * 25 23 21 28 28 H 1.48498 * 109.47412 * 239.99842 * 25 23 21 29 29 H 1.09003 * 109.46855 * 299.91657 * 1 2 3 30 30 H 1.08992 * 109.46952 * 59.91951 * 1 2 3 31 31 H 1.08999 * 109.46941 * 179.91863 * 1 2 3 32 32 H 1.08997 * 109.46252 * 181.38757 * 4 2 1 33 33 H 1.09001 * 109.45889 * 61.43234 * 4 2 1 34 34 H 1.08999 * 109.50018 * 178.68068 * 5 4 2 35 35 H 1.09003 * 109.52231 * 58.59998 * 5 4 2 36 36 H 1.09007 * 109.58499 * 294.84827 * 6 5 4 37 37 H 1.09005 * 109.70464 * 174.49398 * 6 5 4 38 38 H 1.07998 * 123.92668 * 359.94575 * 11 10 8 39 39 H 1.08998 * 109.47153 * 58.52947 * 17 15 7 40 40 H 1.08995 * 109.47210 * 298.52374 * 17 15 7 41 41 H 1.09000 * 109.47335 * 56.48156 * 18 17 15 42 42 H 1.08999 * 109.47369 * 296.47751 * 18 17 15 43 43 H 1.09000 * 109.47040 * 59.99912 * 19 18 17 44 44 H 1.08999 * 109.46844 * 300.00010 * 19 18 17 45 45 H 0.96997 * 120.00088 * 359.97438 * 20 19 18 46 46 H 0.97002 * 119.99330 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 1.5031 -2.1557 -1.2660 6 6 2.0141 -2.9039 -0.0308 7 7 1.6517 -2.1382 1.1696 8 6 0.9741 -2.7218 2.1779 9 8 0.5503 -2.0471 3.0961 10 6 0.7465 -4.1816 2.1674 11 6 -0.0640 -4.8529 3.0809 12 7 -0.0991 -6.1339 2.8565 13 16 0.7987 -6.4514 1.6218 14 7 1.2796 -5.0049 1.2914 15 6 2.0414 -0.7238 1.2496 16 1 3.1275 -0.6463 1.3005 17 6 1.4229 -0.0912 2.4979 18 6 1.8602 1.3716 2.5983 19 6 1.1725 2.0283 3.7969 20 7 1.5908 3.4291 3.8927 21 6 1.1015 4.2226 4.8958 22 1 0.4070 3.8159 5.6160 23 6 1.4982 5.5497 4.9870 24 7 2.3450 6.0452 4.1095 25 14 0.8304 6.6324 6.3548 26 1 -0.0982 5.8424 7.2027 27 1 1.9558 7.1320 7.1849 28 1 0.1020 7.7837 5.7639 29 1 -0.3633 0.5126 0.8908 30 1 -0.3633 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1306 -0.7443 -1.2353 33 1 1.6988 -0.1958 -2.1389 34 1 1.8482 -2.6628 -2.1670 35 1 0.4134 -2.1359 -1.2543 36 1 3.0981 -3.0042 -0.0868 37 1 1.5576 -3.8927 0.0149 38 1 -0.6002 -4.3664 3.8822 39 1 1.7575 -0.6320 3.3831 40 1 0.3362 -0.1417 2.4304 41 1 1.5806 1.8979 1.6857 42 1 2.9414 1.4195 2.7286 43 1 1.4521 1.5020 4.7096 44 1 0.0914 1.9804 3.6666 45 1 2.2148 3.7942 3.2461 46 1 2.6225 6.9724 4.1734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707168514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:24 Heat of formation + Delta-G solvation = 55.644208 kcal Electronic energy + Delta-G solvation = -27750.268143 eV Core-core repulsion = 23996.242805 eV Total energy + Delta-G solvation = -3754.025339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75985 -40.32195 -37.85412 -35.69038 -34.55976 -33.39128 -33.18461 -31.40795 -29.59143 -28.13557 -27.07085 -25.98184 -24.60848 -23.53348 -22.89148 -21.57576 -20.75693 -20.31858 -19.70081 -18.74838 -17.20210 -16.89035 -16.55618 -16.25627 -15.69636 -15.59457 -15.05033 -14.60979 -14.47214 -14.24131 -13.99667 -13.68460 -13.37917 -13.27454 -13.13030 -12.70260 -12.55853 -12.28411 -12.14076 -11.83988 -11.70489 -11.53795 -11.45644 -11.36621 -11.02941 -10.93609 -10.79354 -10.74913 -10.68880 -10.34950 -10.22323 -10.00529 -9.87337 -9.58878 -9.57364 -9.21705 -8.76945 -8.65499 -6.80052 -5.67497 -2.94756 -0.01617 0.97184 1.20155 1.20964 2.68572 2.85617 3.49348 3.54813 3.57434 3.98074 4.25577 4.59304 4.66895 4.69013 4.69784 4.70756 4.85670 5.05951 5.12187 5.20411 5.32459 5.42913 5.55807 5.61052 5.63664 5.66873 5.68283 5.72159 5.83766 5.87676 5.95505 6.02464 6.03176 6.06234 6.22703 6.32639 6.38388 6.48909 6.52589 6.55783 6.83351 7.07556 7.10235 7.18858 7.80288 7.88395 8.52527 9.63043 10.23720 10.58443 11.55981 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002522 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.097001 B =11098.865603 C =12377.723282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.085 3.915 7 N -0.584 5.584 8 C 0.596 3.404 9 O -0.502 6.502 10 C 0.018 3.982 11 C 0.090 3.910 12 N -0.572 5.572 13 S 0.690 5.310 14 N -0.540 5.540 15 C 0.153 3.847 16 H 0.076 0.924 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.157 3.843 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.070 0.930 23 C -0.019 4.019 24 N -0.936 5.936 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.216 0.784 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.382 0.618 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -28.477 -13.758 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.039 4.039 7 N -0.316 5.316 8 C 0.378 3.622 9 O -0.377 6.377 10 C -0.157 4.157 11 C -0.103 4.103 12 N -0.413 5.413 13 S 0.734 5.266 14 N -0.389 5.389 15 C 0.051 3.949 16 H 0.094 0.906 17 C -0.145 4.145 18 C -0.170 4.170 19 C 0.030 3.970 20 N -0.379 5.379 21 C -0.364 4.364 22 H 0.088 0.912 23 C -0.214 4.214 24 N -0.586 5.586 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.232 0.768 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.258 -29.965 -14.005 33.100 hybrid contribution -0.357 2.351 1.207 2.667 sum -1.615 -27.614 -12.797 30.478 Atomic orbital electron populations 1.21886 0.94711 1.01546 1.02248 1.21575 0.96932 1.00097 0.93810 0.89145 1.21585 1.00498 0.95338 0.98005 1.21977 1.01578 0.96338 0.97555 1.22596 1.00962 0.97241 0.83150 1.47899 1.54541 1.11623 1.17527 1.16933 0.79203 0.83115 0.82996 1.90969 1.49361 1.60982 1.36369 1.22851 1.00667 0.97687 0.94516 1.23845 0.98547 0.86895 1.01006 1.72288 1.25931 1.20784 1.22254 1.79228 1.23890 1.10595 1.12856 1.72852 1.28634 1.08892 1.28543 1.21519 0.98789 0.77928 0.96654 0.90636 1.22152 1.02051 0.94535 0.95800 1.21903 1.00473 0.94985 0.99684 1.20575 0.95990 0.85973 0.94508 1.42415 1.54826 1.06032 1.34642 1.19321 1.20468 0.91782 1.04809 0.91182 1.24735 1.00232 0.97207 0.99232 1.69679 1.37164 1.14324 1.37417 0.86115 0.78012 0.80648 0.81482 1.20565 1.21953 1.21959 0.91462 0.92956 0.92992 0.91811 0.91642 0.91001 0.91336 0.91544 0.85443 0.76775 0.89945 0.89968 0.92078 0.92475 0.96488 0.96519 0.78449 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.20 37.16 0.30 -1.35 16 2 C -0.11 -1.13 2.35 -90.50 -0.21 -1.34 16 3 H 0.09 1.05 6.72 -51.93 -0.35 0.70 16 4 C -0.12 -1.00 5.43 -26.69 -0.14 -1.14 16 5 C -0.14 -1.04 5.74 -26.62 -0.15 -1.20 16 6 C 0.09 0.72 6.02 -3.72 -0.02 0.70 16 7 N -0.58 -6.31 2.41 -166.36 -0.40 -6.71 16 8 C 0.60 7.10 7.58 -12.37 -0.09 7.00 16 9 O -0.50 -7.28 12.24 5.31 0.06 -7.22 16 10 C 0.02 0.17 6.57 -83.71 -0.55 -0.38 16 11 C 0.09 0.81 11.23 -17.87 -0.20 0.61 16 12 N -0.57 -4.95 11.41 19.43 0.22 -4.73 16 13 S 0.69 4.25 23.69 -107.50 -2.55 1.71 16 14 N -0.54 -4.42 7.73 23.18 0.18 -4.24 16 15 C 0.15 1.81 2.70 -67.60 -0.18 1.63 16 16 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.11 -1.58 2.69 -26.73 -0.07 -1.65 16 18 C -0.13 -2.26 5.12 -26.73 -0.14 -2.40 16 19 C 0.16 3.44 6.26 -4.04 -0.03 3.41 16 20 N -0.74 -19.80 5.60 -59.90 -0.34 -20.14 16 21 C -0.23 -6.85 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 23 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 24 N -0.94 -29.29 13.06 55.49 0.72 -28.57 16 25 Si 0.91 23.22 29.55 -169.99 -5.02 18.19 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.57 5.97 -51.93 -0.31 0.26 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.57 6.33 -51.93 -0.33 0.24 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.13 1.05 4.15 -66.58 -0.28 0.77 16 38 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.08 1.34 6.42 -51.93 -0.33 1.00 16 40 H 0.08 1.29 5.14 -51.93 -0.27 1.03 16 41 H 0.06 1.03 6.45 -51.93 -0.33 0.69 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -33.60 365.02 -9.96 -43.57 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.61 Total: 6.39 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.73 Total: -3.77 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.39 Total: -64.38 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.06 Total: -7.22 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -2.55 Total: 1.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.60 -9.96 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707168514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.212 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds