Wall clock time and date at job start Tue Mar 31 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52454 * 2 1 4 4 C 1.53042 * 109.50032 * 239.91976 * 2 1 3 5 5 C 1.53038 * 109.53609 * 301.41253 * 4 2 1 6 6 C 1.53183 * 109.31408 * 298.63556 * 5 4 2 7 7 N 1.46923 * 108.78097 * 54.63260 * 6 5 4 8 8 C 1.34775 * 120.63345 * 126.36876 * 7 6 5 9 9 O 1.21565 * 120.00040 * 188.19636 * 8 7 6 10 10 C 1.47750 * 119.99952 * 8.19685 * 8 7 6 11 11 C 1.39355 * 124.11777 * 187.41979 * 10 8 7 12 12 N 1.30095 * 112.14534 * 179.97438 * 11 10 8 13 13 S 1.55925 * 108.75437 * 0.02562 * 12 11 10 14 14 N 1.31500 * 124.11464 * 7.12500 * 10 8 7 15 15 C 1.46922 * 118.73833 * 306.39733 * 7 6 5 16 16 H 1.09005 * 109.58933 * 293.67719 * 15 7 6 17 17 C 1.52999 * 109.58805 * 173.39053 * 15 7 6 18 18 C 1.53004 * 109.46981 * 178.52510 * 17 15 7 19 19 C 1.53007 * 109.46922 * 176.48063 * 18 17 15 20 20 N 1.46498 * 109.46943 * 180.02562 * 19 18 17 21 21 C 1.36942 * 119.99839 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99944 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99787 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47327 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47211 * 119.99877 * 25 23 21 28 28 H 1.48498 * 109.47412 * 239.99842 * 25 23 21 29 29 H 1.09003 * 109.46855 * 299.91657 * 1 2 3 30 30 H 1.08992 * 109.46952 * 59.91951 * 1 2 3 31 31 H 1.08999 * 109.46941 * 179.91863 * 1 2 3 32 32 H 1.08997 * 109.46252 * 181.38757 * 4 2 1 33 33 H 1.09001 * 109.45889 * 61.43234 * 4 2 1 34 34 H 1.08999 * 109.50018 * 178.68068 * 5 4 2 35 35 H 1.09003 * 109.52231 * 58.59998 * 5 4 2 36 36 H 1.09007 * 109.58499 * 294.84827 * 6 5 4 37 37 H 1.09005 * 109.70464 * 174.49398 * 6 5 4 38 38 H 1.07998 * 123.92668 * 359.94575 * 11 10 8 39 39 H 1.08998 * 109.47153 * 58.52947 * 17 15 7 40 40 H 1.08995 * 109.47210 * 298.52374 * 17 15 7 41 41 H 1.09000 * 109.47335 * 56.48156 * 18 17 15 42 42 H 1.08999 * 109.47369 * 296.47751 * 18 17 15 43 43 H 1.09000 * 109.47040 * 59.99912 * 19 18 17 44 44 H 1.08999 * 109.46844 * 300.00010 * 19 18 17 45 45 H 0.96997 * 120.00088 * 359.97438 * 20 19 18 46 46 H 0.97002 * 119.99330 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 1.5031 -2.1557 -1.2660 6 6 2.0141 -2.9039 -0.0308 7 7 1.6517 -2.1382 1.1696 8 6 0.9741 -2.7218 2.1779 9 8 0.5503 -2.0471 3.0961 10 6 0.7465 -4.1816 2.1674 11 6 -0.0640 -4.8529 3.0809 12 7 -0.0991 -6.1339 2.8565 13 16 0.7987 -6.4514 1.6218 14 7 1.2796 -5.0049 1.2914 15 6 2.0414 -0.7238 1.2496 16 1 3.1275 -0.6463 1.3005 17 6 1.4229 -0.0912 2.4979 18 6 1.8602 1.3716 2.5983 19 6 1.1725 2.0283 3.7969 20 7 1.5908 3.4291 3.8927 21 6 1.1015 4.2226 4.8958 22 1 0.4070 3.8159 5.6160 23 6 1.4982 5.5497 4.9870 24 7 2.3450 6.0452 4.1095 25 14 0.8304 6.6324 6.3548 26 1 -0.0982 5.8424 7.2027 27 1 1.9558 7.1320 7.1849 28 1 0.1020 7.7837 5.7639 29 1 -0.3633 0.5126 0.8908 30 1 -0.3633 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1306 -0.7443 -1.2353 33 1 1.6988 -0.1958 -2.1389 34 1 1.8482 -2.6628 -2.1670 35 1 0.4134 -2.1359 -1.2543 36 1 3.0981 -3.0042 -0.0868 37 1 1.5576 -3.8927 0.0149 38 1 -0.6002 -4.3664 3.8822 39 1 1.7575 -0.6320 3.3831 40 1 0.3362 -0.1417 2.4304 41 1 1.5806 1.8979 1.6857 42 1 2.9414 1.4195 2.7286 43 1 1.4521 1.5020 4.7096 44 1 0.0914 1.9804 3.6666 45 1 2.2148 3.7942 3.2461 46 1 2.6225 6.9724 4.1734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707168514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:23 Heat of formation + Delta-G solvation = 34.065534 kcal Electronic energy + Delta-G solvation = -27751.203865 eV Core-core repulsion = 23996.242805 eV Total energy + Delta-G solvation = -3754.961060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51824 -41.12624 -38.74948 -37.28912 -35.66470 -34.72068 -33.96891 -33.09297 -31.03372 -29.12132 -27.99153 -27.14278 -25.89085 -24.71128 -24.07053 -22.84701 -21.98233 -21.23330 -20.35988 -19.58327 -19.12811 -17.96575 -17.34940 -17.11991 -16.73176 -16.57039 -16.37550 -15.89043 -15.50832 -15.35543 -15.18890 -15.05017 -14.93322 -14.54702 -14.22935 -13.67972 -13.44208 -13.35544 -13.17389 -13.00158 -12.87623 -12.78326 -12.56302 -12.43975 -12.27788 -12.14944 -12.10567 -12.04760 -11.90876 -11.75255 -11.63713 -11.37356 -11.27283 -10.95683 -10.87507 -10.24610 -10.18007 -9.52805 -9.01632 -7.96635 -5.25835 -0.68004 0.34730 0.46866 0.63711 1.45822 1.47369 1.57958 1.86946 2.01381 2.55246 3.25264 3.36411 3.50934 3.74538 3.80348 3.93536 3.98920 4.02386 4.13280 4.21635 4.26001 4.33523 4.48961 4.56493 4.61764 4.63848 4.71899 4.74310 4.80735 4.92640 4.98135 5.04126 5.07967 5.09626 5.18111 5.25196 5.29088 5.32335 5.33138 5.46230 5.48046 5.50857 5.55843 5.76738 6.26420 6.33495 7.00479 7.31967 8.07485 8.33128 9.27368 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002522 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.097001 B =11098.865603 C =12377.723282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.083 3.917 7 N -0.582 5.582 8 C 0.591 3.409 9 O -0.540 6.540 10 C -0.001 4.001 11 C 0.085 3.915 12 N -0.598 5.598 13 S 0.780 5.220 14 N -0.547 5.547 15 C 0.156 3.844 16 H 0.082 0.918 17 C -0.090 4.090 18 C -0.117 4.117 19 C 0.157 3.843 20 N -0.747 5.747 21 C -0.248 4.248 22 H 0.071 0.929 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.976 3.024 26 H -0.268 1.268 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.012 0.988 45 H 0.375 0.625 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -30.408 -15.060 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.040 4.040 7 N -0.314 5.314 8 C 0.374 3.626 9 O -0.418 6.418 10 C -0.173 4.173 11 C -0.106 4.106 12 N -0.440 5.440 13 S 0.823 5.177 14 N -0.399 5.399 15 C 0.054 3.946 16 H 0.099 0.901 17 C -0.128 4.128 18 C -0.155 4.155 19 C 0.031 3.969 20 N -0.389 5.389 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.193 1.193 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.030 0.970 45 H 0.206 0.794 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.102 -31.921 -15.314 35.422 hybrid contribution -0.405 2.752 1.556 3.187 sum -1.507 -29.169 -13.759 32.286 Atomic orbital electron populations 1.21824 0.95238 1.01396 1.01416 1.21551 0.96404 0.99794 0.94540 0.90129 1.21563 1.00972 0.95691 0.96760 1.21962 1.01125 0.95752 0.98062 1.22789 1.01630 0.97319 0.82310 1.47965 1.54092 1.11153 1.18158 1.17217 0.78694 0.84075 0.82592 1.90941 1.50998 1.62187 1.37652 1.22384 1.02393 0.96676 0.95882 1.23805 0.98629 0.87052 1.01122 1.72156 1.27256 1.20653 1.23933 1.78899 1.20687 1.08016 1.10055 1.72600 1.28761 1.10004 1.28524 1.21368 0.98796 0.78854 0.95600 0.90061 1.21911 1.01348 0.92621 0.96959 1.21753 0.99827 0.96337 0.97576 1.20694 0.96028 0.83960 0.96263 1.42614 1.54655 1.07663 1.34000 1.19684 1.20429 0.92541 1.05345 0.91091 1.25612 1.00816 0.98566 1.01884 1.69829 1.38433 1.14573 1.39199 0.85029 0.77444 0.78520 0.78514 1.19264 1.21669 1.21632 0.93985 0.92009 0.92797 0.90983 0.90767 0.88549 0.91994 0.90607 0.84847 0.76682 0.91562 0.91186 0.91681 0.92469 0.97237 0.97020 0.79361 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.20 71.98 0.59 -2.59 16 2 C -0.10 -2.16 2.35 -10.71 -0.03 -2.18 16 3 H 0.08 1.84 6.72 -2.39 -0.02 1.83 16 4 C -0.11 -1.67 5.43 30.62 0.17 -1.50 16 5 C -0.13 -1.66 5.74 30.67 0.18 -1.48 16 6 C 0.08 1.23 6.02 86.36 0.52 1.75 16 7 N -0.58 -12.21 2.41 -798.52 -1.93 -14.14 16 8 C 0.59 14.21 7.58 86.76 0.66 14.87 16 9 O -0.54 -16.44 12.24 -3.92 -0.05 -16.49 16 10 C 0.00 -0.02 6.57 41.98 0.28 0.25 16 11 C 0.09 1.49 11.23 85.22 0.96 2.45 16 12 N -0.60 -9.45 11.41 -92.43 -1.05 -10.50 16 13 S 0.78 7.60 23.69 -56.49 -1.34 6.26 16 14 N -0.55 -7.86 7.73 -80.56 -0.62 -8.48 16 15 C 0.16 3.67 2.70 44.98 0.12 3.79 16 16 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 17 C -0.09 -2.76 2.69 30.60 0.08 -2.67 16 18 C -0.12 -4.12 5.12 30.60 0.16 -3.97 16 19 C 0.16 7.12 6.26 86.38 0.54 7.66 16 20 N -0.75 -41.26 5.60 -343.44 -1.92 -43.18 16 21 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 22 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 25 Si 0.98 48.01 29.55 68.60 2.03 50.04 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H 0.04 1.14 6.31 -2.39 -0.02 1.13 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.17 5.97 -2.39 -0.01 1.16 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.89 6.33 -2.39 -0.02 0.88 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.13 1.87 4.15 -31.33 -0.13 1.74 16 38 H 0.22 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.07 2.25 6.42 -2.39 -0.02 2.24 16 40 H 0.07 2.33 5.14 -2.39 -0.01 2.32 16 41 H 0.06 2.25 6.45 -2.39 -0.02 2.23 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.37 21.51 7.67 -92.71 -0.71 20.80 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.82 365.02 1.11 -71.71 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.18 Total: 27.68 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.53 Total: -1.80 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -5.24 Total: -137.42 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -1.34 Total: 6.26 kcal Total: -72.82 1.11 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707168514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.779 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds