Wall clock time and date at job start Tue Mar 31 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.49762 * 2 1 4 4 C 1.53040 * 109.51804 * 239.92162 * 2 1 3 5 5 C 1.53044 * 109.53394 * 178.66618 * 4 2 1 6 6 C 1.52760 * 109.38407 * 61.23945 * 5 4 2 7 7 N 1.46920 * 109.00683 * 305.58678 * 6 5 4 8 8 C 1.34782 * 120.63426 * 233.58375 * 7 6 5 9 9 O 1.21582 * 120.00290 * 183.93021 * 8 7 6 10 10 C 1.47574 * 119.99429 * 3.92217 * 8 7 6 11 11 C 1.39730 * 120.14483 * 310.00007 * 10 8 7 12 12 C 1.37738 * 119.90424 * 179.74318 * 11 10 8 13 13 C 1.38755 * 120.18979 * 0.25291 * 12 11 10 14 14 F 1.35107 * 119.85439 * 179.97438 * 13 12 11 15 15 C 1.38489 * 120.29109 * 359.97438 * 13 12 11 16 16 C 1.38202 * 120.08823 * 0.02562 * 15 13 12 17 17 F 1.35097 * 120.09505 * 179.97438 * 16 15 13 18 18 C 1.46931 * 118.74241 * 53.31351 * 7 6 5 19 19 H 1.08999 * 109.58871 * 66.42219 * 18 7 6 20 20 C 1.52993 * 109.59109 * 186.71400 * 18 7 6 21 21 N 1.46505 * 109.46845 * 283.82528 * 20 18 7 22 22 C 1.36933 * 120.00048 * 185.38842 * 21 20 18 23 23 H 1.08002 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00272 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99907 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00203 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46833 * 59.99720 * 26 24 22 28 28 H 1.48494 * 109.46933 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46792 * 299.99725 * 26 24 22 30 30 H 1.09007 * 109.46807 * 299.93448 * 1 2 3 31 31 H 1.08999 * 109.47478 * 59.93152 * 1 2 3 32 32 H 1.09005 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46194 * 298.68193 * 4 2 1 34 34 H 1.08997 * 109.46262 * 58.64763 * 4 2 1 35 35 H 1.09003 * 109.50009 * 181.31589 * 5 4 2 36 36 H 1.08997 * 109.49904 * 301.37678 * 5 4 2 37 37 H 1.09001 * 109.50772 * 185.70658 * 6 5 4 38 38 H 1.09002 * 109.43291 * 65.42643 * 6 5 4 39 39 H 1.07998 * 120.04693 * 0.02562 * 11 10 8 40 40 H 1.07999 * 119.90598 * 180.22739 * 12 11 10 41 41 H 1.07996 * 119.95858 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47557 * 43.82124 * 20 18 7 43 43 H 1.09001 * 109.47446 * 163.82747 * 20 18 7 44 44 H 0.97000 * 119.99927 * 5.39281 * 21 20 18 45 45 H 0.96997 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7229 -1.2482 5 6 3.5714 -0.6942 -1.2655 6 6 4.1062 -1.4204 -0.0326 7 7 3.5047 -0.8281 1.1700 8 6 4.2808 -0.3841 2.1785 9 8 3.7703 0.0382 3.1979 10 6 5.7503 -0.4107 2.0454 11 6 6.3964 -1.5787 1.6322 12 6 7.7678 -1.5965 1.5045 13 6 8.5099 -0.4593 1.7900 14 9 9.8547 -0.4844 1.6629 15 6 7.8781 0.7012 2.2046 16 6 6.5028 0.7321 2.3367 17 9 5.8864 1.8641 2.7417 18 6 2.0413 -0.7235 1.2498 19 1 1.6057 -1.7215 1.2981 20 6 1.6510 0.0677 2.4997 21 7 1.8026 -0.7827 3.6830 22 6 1.4054 -0.3246 4.9108 23 1 0.9808 0.6637 5.0070 24 6 1.5495 -1.1302 6.0321 25 7 2.0674 -2.3345 5.9150 26 14 1.0070 -0.5055 7.7069 27 1 -0.4446 -0.1944 7.6727 28 1 1.2652 -1.5487 8.7317 29 1 1.7687 0.7229 8.0475 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6978 -1.7573 -1.2352 34 1 1.6587 -0.2246 -2.1389 35 1 3.9345 -1.1887 -2.1665 36 1 3.9160 0.3398 -1.2542 37 1 5.1901 -1.3142 0.0108 38 1 3.8424 -2.4764 -0.0909 39 1 5.8210 -2.4650 1.4090 40 1 8.2669 -2.4982 1.1817 41 1 8.4610 1.5833 2.4250 42 1 2.2975 0.9401 2.5942 43 1 0.6136 0.3916 2.4156 44 1 2.1843 -1.6703 3.5967 45 1 2.1677 -2.8975 6.6984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715482214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:14 Heat of formation + Delta-G solvation = -67.653087 kcal Electronic energy + Delta-G solvation = -30931.362414 eV Core-core repulsion = 26585.857365 eV Total energy + Delta-G solvation = -4345.505048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15205 -50.09882 -41.80760 -39.67904 -38.39895 -36.40383 -34.89637 -33.68108 -32.22972 -32.01316 -31.53311 -28.47538 -27.15822 -25.97060 -24.73915 -24.22837 -23.78631 -22.28409 -21.45995 -20.53335 -19.25227 -19.17469 -18.34451 -18.04777 -17.22264 -16.92667 -16.75770 -16.59866 -16.38730 -16.16142 -16.06312 -15.58582 -15.52124 -15.46689 -15.13098 -14.85905 -14.55082 -14.16815 -14.04829 -13.79909 -13.57619 -13.47771 -13.35579 -13.05881 -12.95681 -12.85008 -12.73619 -12.57159 -12.46258 -12.15766 -11.92390 -11.83997 -11.62784 -11.52295 -11.11732 -10.88327 -10.27520 -10.08342 -9.74838 -9.46290 -8.68611 -7.85078 -5.04254 -0.42757 -0.11675 1.41248 1.46258 1.51500 1.73318 1.97417 2.33053 2.60557 2.70912 3.23339 3.39733 3.47950 3.49739 3.75160 3.79762 3.83362 3.93682 4.01921 4.13722 4.29185 4.33386 4.42213 4.55580 4.59133 4.62683 4.64998 4.77351 4.80079 4.83099 4.86464 4.88575 4.96563 4.96657 5.04972 5.12427 5.24219 5.29509 5.29910 5.43062 5.50250 5.54777 5.58613 5.80366 6.36774 6.52359 7.37817 7.44132 8.23472 8.47086 9.39710 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008769 B = 0.005036 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.303088 B = 5558.188286 C = 7805.879467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.090 3.910 7 N -0.602 5.602 8 C 0.517 3.483 9 O -0.501 6.501 10 C -0.176 4.176 11 C -0.031 4.031 12 C -0.146 4.146 13 C 0.145 3.855 14 F -0.125 7.125 15 C -0.192 4.192 16 C 0.145 3.855 17 F -0.140 7.140 18 C 0.155 3.845 19 H 0.065 0.935 20 C 0.160 3.840 21 N -0.704 5.704 22 C -0.212 4.212 23 H 0.058 0.942 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.965 3.035 27 H -0.276 1.276 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.169 0.831 40 H 0.186 0.814 41 H 0.167 0.833 42 H 0.013 0.987 43 H 0.020 0.980 44 H 0.367 0.633 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 0.428 -22.111 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.032 4.032 7 N -0.337 5.337 8 C 0.303 3.697 9 O -0.374 6.374 10 C -0.181 4.181 11 C -0.049 4.049 12 C -0.164 4.164 13 C 0.126 3.874 14 F -0.104 7.104 15 C -0.212 4.212 16 C 0.124 3.876 17 F -0.118 7.118 18 C 0.051 3.949 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.345 5.345 22 C -0.345 4.345 23 H 0.076 0.924 24 C -0.274 4.274 25 N -0.626 5.626 26 Si 0.795 3.205 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.187 0.813 40 H 0.204 0.796 41 H 0.185 0.815 42 H 0.031 0.969 43 H 0.038 0.962 44 H 0.199 0.801 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.798 0.843 -21.428 24.010 hybrid contribution -0.070 0.557 1.754 1.841 sum 10.728 1.400 -19.675 22.453 Atomic orbital electron populations 1.21831 0.93726 1.02453 1.02119 1.21429 0.96603 0.99214 0.93912 0.92046 1.21574 0.95469 1.01110 0.96350 1.21850 0.95854 1.01068 0.97925 1.22259 0.99559 0.98071 0.83262 1.47944 1.05802 1.61531 1.18432 1.18590 0.86714 0.80492 0.83918 1.91264 1.73107 1.44090 1.28967 1.20305 0.94111 0.95899 1.07762 1.21306 0.94421 0.96066 0.93094 1.21455 0.93146 0.99000 1.02847 1.17478 0.77369 0.94076 0.98500 1.91559 1.28773 1.96951 1.93086 1.21058 0.92110 1.01216 1.06788 1.17542 0.90524 0.81988 0.97500 1.91533 1.83491 1.49127 1.87677 1.21408 0.79319 0.98930 0.95198 0.91747 1.20994 0.95822 0.94039 0.85756 1.42212 1.73574 1.15842 1.02856 1.19425 1.29943 0.98111 0.87050 0.92399 1.25341 1.04049 0.97202 1.00784 1.69797 1.53786 1.10106 1.28897 0.85317 0.78153 0.76541 0.80478 1.20208 1.21849 1.21809 0.93934 0.90227 0.92143 0.90886 0.89639 0.87433 0.92510 0.88012 0.89610 0.81343 0.79637 0.81540 0.96909 0.96212 0.80143 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.00 71.98 0.65 -2.68 16 2 C -0.09 -2.27 2.34 -10.71 -0.03 -2.30 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -1.79 5.17 30.62 0.16 -1.63 16 5 C -0.13 -1.92 6.06 30.53 0.19 -1.74 16 6 C 0.09 1.70 5.32 86.22 0.46 2.16 16 7 N -0.60 -18.68 2.98 -799.54 -2.38 -21.06 16 8 C 0.52 20.09 6.73 86.71 0.58 20.67 16 9 O -0.50 -26.10 10.66 -3.97 -0.04 -26.14 16 10 C -0.18 -5.38 5.04 -20.05 -0.10 -5.48 16 11 C -0.03 -0.63 7.34 22.51 0.17 -0.47 16 12 C -0.15 -2.31 10.01 22.27 0.22 -2.09 16 13 C 0.15 2.76 7.30 22.45 0.16 2.92 16 14 F -0.13 -2.27 17.26 44.97 0.78 -1.50 16 15 C -0.19 -4.39 9.99 22.32 0.22 -4.17 16 16 C 0.14 4.43 7.26 22.66 0.16 4.60 16 17 F -0.14 -5.22 16.53 44.97 0.74 -4.47 16 18 C 0.15 5.24 2.36 44.97 0.11 5.34 16 19 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 20 C 0.16 7.37 4.87 86.38 0.42 7.79 16 21 N -0.70 -39.95 3.34 -343.46 -1.15 -41.09 16 22 C -0.21 -13.32 9.82 84.03 0.83 -12.50 16 23 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 24 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 25 N -0.97 -64.26 13.06 21.65 0.28 -63.98 16 26 Si 0.96 50.99 29.55 68.60 2.03 53.01 16 27 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 29 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 30 H 0.04 1.18 6.33 -2.38 -0.02 1.16 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.62 4.50 -2.39 -0.01 1.61 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.17 2.82 6.99 -2.91 -0.02 2.80 16 40 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.01 0.68 6.07 -2.39 -0.01 0.67 16 43 H 0.02 0.92 6.07 -2.39 -0.01 0.90 16 44 H 0.37 22.05 7.48 -92.71 -0.69 21.36 16 45 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -83.34 361.78 5.26 -78.08 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.34 Total: 21.49 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 4.67 Total: 5.66 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -3.24 Total: -126.13 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.14 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.52 Total: -5.97 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.03 Total: 53.01 kcal Total: -83.34 5.26 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds