Wall clock time and date at job start Tue Mar 31 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.51982 * 2 1 4 4 C 1.53072 * 109.38854 * 239.82846 * 2 1 3 5 5 C 1.53036 * 109.66097 * 301.27927 * 4 2 1 6 6 C 1.53196 * 109.30922 * 298.69907 * 5 4 2 7 7 N 1.46926 * 108.77638 * 54.63583 * 6 5 4 8 8 C 1.34770 * 120.63124 * 126.40935 * 7 6 5 9 9 O 1.21585 * 120.00465 * 185.88331 * 8 7 6 10 10 C 1.47576 * 120.00134 * 5.88412 * 8 7 6 11 11 C 1.39732 * 120.13895 * 39.51127 * 10 8 7 12 12 C 1.37737 * 119.90433 * 179.72445 * 11 10 8 13 13 C 1.38762 * 120.19068 * 0.58055 * 12 11 10 14 14 F 1.35097 * 119.85826 * 179.72243 * 13 12 11 15 15 C 1.38493 * 120.28566 * 359.68974 * 13 12 11 16 16 C 1.38198 * 120.09164 * 0.02562 * 15 13 12 17 17 F 1.35101 * 120.09621 * 180.02562 * 16 15 13 18 18 C 1.46920 * 118.73813 * 306.39135 * 7 6 5 19 19 H 1.09004 * 109.58653 * 293.67724 * 18 7 6 20 20 C 1.52998 * 109.58537 * 173.39532 * 18 7 6 21 21 N 1.46502 * 109.47321 * 69.69693 * 20 18 7 22 22 C 1.36936 * 120.00040 * 175.27245 * 21 20 18 23 23 H 1.07999 * 119.99835 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99933 * 180.27401 * 22 21 20 25 25 N 1.31619 * 119.99936 * 359.72852 * 24 22 21 26 26 Si 1.86801 * 120.00048 * 179.72537 * 24 22 21 27 27 H 1.48499 * 109.47050 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46963 * 120.00105 * 26 24 22 29 29 H 1.48499 * 109.47081 * 240.00234 * 26 24 22 30 30 H 1.08996 * 109.47066 * 299.92368 * 1 2 3 31 31 H 1.09003 * 109.47007 * 59.91897 * 1 2 3 32 32 H 1.09001 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.34496 * 181.25170 * 4 2 1 34 34 H 1.09001 * 109.45415 * 61.36934 * 4 2 1 35 35 H 1.08997 * 109.50136 * 178.75166 * 5 4 2 36 36 H 1.08994 * 109.52588 * 58.66477 * 5 4 2 37 37 H 1.09001 * 109.58756 * 294.84490 * 6 5 4 38 38 H 1.09005 * 109.70290 * 174.49191 * 6 5 4 39 39 H 1.08001 * 120.05185 * 0.02562 * 11 10 8 40 40 H 1.07998 * 119.90767 * 180.27572 * 12 11 10 41 41 H 1.07995 * 119.95478 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.47581 * 309.69718 * 20 18 7 43 43 H 1.09006 * 109.47037 * 189.69854 * 20 18 7 44 44 H 0.96997 * 119.99631 * 355.27999 * 21 20 18 45 45 H 0.97001 * 120.00402 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0382 -0.7257 -1.2483 5 6 1.5033 -2.1595 -1.2639 6 6 2.0172 -2.9053 -0.0284 7 7 1.6544 -2.1390 1.1715 8 6 0.9799 -2.7231 2.1815 9 8 0.5920 -2.0549 3.1203 10 6 0.7120 -4.1740 2.1481 11 6 1.6886 -5.0571 1.6802 12 6 1.4355 -6.4109 1.6564 13 6 0.2092 -6.8991 2.0845 14 9 -0.0339 -8.2277 2.0530 15 6 -0.7664 -6.0304 2.5444 16 6 -0.5229 -4.6705 2.5789 17 9 -1.4744 -3.8231 3.0280 18 6 2.0413 -0.7238 1.2496 19 1 3.1273 -0.6441 1.2994 20 6 1.4229 -0.0911 2.4979 21 7 2.0729 -0.6336 3.6935 22 6 1.7509 -0.1423 4.9304 23 1 1.0174 0.6448 5.0246 24 6 2.3710 -0.6524 6.0628 25 7 3.2645 -1.6120 5.9479 26 14 1.9373 0.0231 7.7495 27 1 0.9121 1.0880 7.6076 28 1 1.3998 -1.0710 8.5976 29 1 3.1548 0.5888 8.3842 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1280 -0.7447 -1.2364 34 1 1.6942 -0.2001 -2.1391 35 1 1.8485 -2.6668 -2.1648 36 1 0.4136 -2.1419 -1.2511 37 1 3.1013 -3.0035 -0.0854 38 1 1.5627 -3.8950 0.0189 39 1 2.6422 -4.6793 1.3423 40 1 2.1919 -7.0939 1.2990 41 1 -1.7188 -6.4163 2.8767 42 1 0.3571 -0.3170 2.5297 43 1 1.5645 0.9892 2.4658 44 1 2.7315 -1.3407 3.6088 45 1 3.6981 -1.9682 6.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715482218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:18 Heat of formation + Delta-G solvation = -38.765535 kcal Electronic energy + Delta-G solvation = -31313.238453 eV Core-core repulsion = 26968.986063 eV Total energy + Delta-G solvation = -4344.252390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.14106 -48.80970 -40.61683 -38.61033 -37.10715 -34.57580 -33.40644 -32.10120 -31.03765 -30.52648 -30.00838 -27.04163 -26.12829 -24.44305 -23.43362 -23.29900 -22.56067 -21.22010 -20.16774 -18.63452 -18.08034 -17.46637 -17.04062 -16.54552 -16.04085 -15.74751 -15.47054 -15.33767 -15.04741 -14.87104 -14.78940 -14.42877 -14.24818 -14.08556 -13.75074 -13.49360 -13.09173 -13.01264 -12.69760 -12.51447 -12.38310 -12.17940 -12.06955 -11.96119 -11.57563 -11.54134 -11.24347 -10.99113 -10.86108 -10.71325 -10.62066 -10.33014 -10.18071 -9.82876 -9.52285 -9.12904 -8.80159 -8.75988 -8.32911 -8.08338 -6.53137 -5.57253 -2.75098 0.65435 0.93490 2.97121 3.27363 3.54090 3.60261 3.62254 3.67222 3.78541 4.32782 4.49488 4.58955 4.72814 4.72861 4.77704 4.89269 4.92301 5.05314 5.11396 5.29672 5.41303 5.51045 5.61419 5.66127 5.73373 5.76925 5.79265 5.80057 5.82543 5.86783 5.92717 5.95176 5.99950 6.01623 6.14074 6.20105 6.31313 6.50550 6.54823 6.61334 6.69118 6.93612 7.29881 7.87216 7.88249 8.61074 8.84766 9.72442 10.31605 10.65647 11.66597 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008514 B = 0.005528 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.061962 B = 5064.130029 C = 7295.724062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.136 4.136 6 C 0.100 3.900 7 N -0.607 5.607 8 C 0.513 3.487 9 O -0.423 6.423 10 C -0.153 4.153 11 C -0.038 4.038 12 C -0.172 4.172 13 C 0.137 3.863 14 F -0.133 7.133 15 C -0.200 4.200 16 C 0.176 3.824 17 F -0.113 7.113 18 C 0.149 3.851 19 H 0.069 0.931 20 C 0.156 3.844 21 N -0.695 5.695 22 C -0.204 4.204 23 H 0.066 0.934 24 C -0.022 4.022 25 N -0.936 5.936 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.379 0.621 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -7.881 -18.722 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.023 4.023 7 N -0.345 5.345 8 C 0.298 3.702 9 O -0.290 6.290 10 C -0.158 4.158 11 C -0.057 4.057 12 C -0.190 4.190 13 C 0.117 3.883 14 F -0.111 7.111 15 C -0.220 4.220 16 C 0.156 3.844 17 F -0.091 7.091 18 C 0.046 3.954 19 H 0.087 0.913 20 C 0.029 3.971 21 N -0.338 5.338 22 C -0.336 4.336 23 H 0.084 0.916 24 C -0.217 4.217 25 N -0.587 5.587 26 Si 0.734 3.266 27 H -0.208 1.208 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.212 0.788 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.053 -7.373 -17.986 19.857 hybrid contribution -0.101 -0.259 1.055 1.091 sum -4.154 -7.632 -16.931 19.030 Atomic orbital electron populations 1.21855 0.94895 1.02007 1.01406 1.21477 0.96723 0.99378 0.94386 0.90214 1.21532 1.00438 0.95414 0.97612 1.21959 1.01686 0.96320 0.97470 1.21955 0.99872 0.95616 0.84840 1.47606 1.58411 1.10850 1.17608 1.17823 0.82950 0.85898 0.83562 1.91239 1.44830 1.61304 1.31628 1.20399 0.94222 0.96477 1.04675 1.21193 0.98655 0.91537 0.94298 1.21083 0.96479 0.96438 1.05048 1.17406 0.94169 0.77298 0.99427 1.91521 1.94736 1.30819 1.94047 1.20932 1.01966 0.91615 1.07500 1.17230 0.85726 0.86604 0.94883 1.91606 1.61840 1.69960 1.85667 1.21505 0.98713 0.79346 0.95829 0.91264 1.21031 0.97592 0.93858 0.84612 1.42304 1.46877 1.43587 1.00999 1.19208 1.16728 1.13490 0.84212 0.91567 1.24617 1.00165 0.99483 0.97392 1.69659 1.31015 1.30278 1.27742 0.86158 0.77221 0.77893 0.85299 1.20772 1.22234 1.22281 0.91966 0.93437 0.92517 0.91906 0.92013 0.91261 0.91216 0.91709 0.89580 0.83293 0.83760 0.83233 0.93344 0.96769 0.78783 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.22 37.16 0.31 -1.54 16 2 C -0.10 -1.25 2.81 -90.48 -0.25 -1.50 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.10 5.42 -26.67 -0.14 -1.24 16 5 C -0.14 -1.26 5.74 -26.61 -0.15 -1.41 16 6 C 0.10 1.08 4.87 -3.71 -0.02 1.06 16 7 N -0.61 -9.25 2.42 -166.43 -0.40 -9.65 16 8 C 0.51 9.61 6.59 -12.45 -0.08 9.53 16 9 O -0.42 -10.13 10.07 5.29 0.05 -10.08 16 10 C -0.15 -2.43 5.15 -104.91 -0.54 -2.97 16 11 C -0.04 -0.47 7.36 -39.21 -0.29 -0.76 16 12 C -0.17 -1.83 10.01 -39.57 -0.40 -2.23 16 13 C 0.14 1.61 7.30 -39.29 -0.29 1.33 16 14 F -0.13 -1.53 17.26 2.25 0.04 -1.50 16 15 C -0.20 -2.57 9.99 -39.50 -0.39 -2.97 16 16 C 0.18 2.79 7.24 -38.97 -0.28 2.50 16 17 F -0.11 -2.05 16.24 2.25 0.04 -2.01 16 18 C 0.15 2.42 2.62 -67.60 -0.18 2.24 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.31 4.04 -4.04 -0.02 3.29 16 21 N -0.70 -18.37 3.24 -59.91 -0.19 -18.56 16 22 C -0.20 -6.05 9.71 -15.06 -0.15 -6.19 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 25 N -0.94 -29.57 13.06 55.49 0.72 -28.85 16 26 Si 0.90 23.86 29.55 -169.99 -5.02 18.84 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.91 7.11 56.52 0.40 -7.50 16 29 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 30 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.77 5.98 -51.93 -0.31 0.46 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.09 0.84 4.70 -51.93 -0.24 0.60 16 39 H 0.15 1.56 6.50 -52.49 -0.34 1.22 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.05 1.12 5.06 -51.93 -0.26 0.85 16 43 H 0.01 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.38 10.60 7.10 -40.82 -0.29 10.31 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -34.57 355.32 -8.27 -42.85 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.89 Total: 5.22 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.97 Total: -1.62 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.13 Total: -57.06 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.05 Total: -10.08 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.57 -8.27 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds