Wall clock time and date at job start Tue Mar 31 2020 21:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.51982 * 2 1 4 4 C 1.53072 * 109.38854 * 239.82846 * 2 1 3 5 5 C 1.53036 * 109.66097 * 301.27927 * 4 2 1 6 6 C 1.53196 * 109.30922 * 298.69907 * 5 4 2 7 7 N 1.46926 * 108.77638 * 54.63583 * 6 5 4 8 8 C 1.34770 * 120.63124 * 126.40935 * 7 6 5 9 9 O 1.21585 * 120.00465 * 185.88331 * 8 7 6 10 10 C 1.47576 * 120.00134 * 5.88412 * 8 7 6 11 11 C 1.39732 * 120.13895 * 39.51127 * 10 8 7 12 12 C 1.37737 * 119.90433 * 179.72445 * 11 10 8 13 13 C 1.38762 * 120.19068 * 0.58055 * 12 11 10 14 14 F 1.35097 * 119.85826 * 179.72243 * 13 12 11 15 15 C 1.38493 * 120.28566 * 359.68974 * 13 12 11 16 16 C 1.38198 * 120.09164 * 0.02562 * 15 13 12 17 17 F 1.35101 * 120.09621 * 180.02562 * 16 15 13 18 18 C 1.46920 * 118.73813 * 306.39135 * 7 6 5 19 19 H 1.09004 * 109.58653 * 293.67724 * 18 7 6 20 20 C 1.52998 * 109.58537 * 173.39532 * 18 7 6 21 21 N 1.46502 * 109.47321 * 69.69693 * 20 18 7 22 22 C 1.36936 * 120.00040 * 175.27245 * 21 20 18 23 23 H 1.07999 * 119.99835 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99933 * 180.27401 * 22 21 20 25 25 N 1.31619 * 119.99936 * 359.72852 * 24 22 21 26 26 Si 1.86801 * 120.00048 * 179.72537 * 24 22 21 27 27 H 1.48499 * 109.47050 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46963 * 120.00105 * 26 24 22 29 29 H 1.48499 * 109.47081 * 240.00234 * 26 24 22 30 30 H 1.08996 * 109.47066 * 299.92368 * 1 2 3 31 31 H 1.09003 * 109.47007 * 59.91897 * 1 2 3 32 32 H 1.09001 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.34496 * 181.25170 * 4 2 1 34 34 H 1.09001 * 109.45415 * 61.36934 * 4 2 1 35 35 H 1.08997 * 109.50136 * 178.75166 * 5 4 2 36 36 H 1.08994 * 109.52588 * 58.66477 * 5 4 2 37 37 H 1.09001 * 109.58756 * 294.84490 * 6 5 4 38 38 H 1.09005 * 109.70290 * 174.49191 * 6 5 4 39 39 H 1.08001 * 120.05185 * 0.02562 * 11 10 8 40 40 H 1.07998 * 119.90767 * 180.27572 * 12 11 10 41 41 H 1.07995 * 119.95478 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.47581 * 309.69718 * 20 18 7 43 43 H 1.09006 * 109.47037 * 189.69854 * 20 18 7 44 44 H 0.96997 * 119.99631 * 355.27999 * 21 20 18 45 45 H 0.97001 * 120.00402 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0382 -0.7257 -1.2483 5 6 1.5033 -2.1595 -1.2639 6 6 2.0172 -2.9053 -0.0284 7 7 1.6544 -2.1390 1.1715 8 6 0.9799 -2.7231 2.1815 9 8 0.5920 -2.0549 3.1203 10 6 0.7120 -4.1740 2.1481 11 6 1.6886 -5.0571 1.6802 12 6 1.4355 -6.4109 1.6564 13 6 0.2092 -6.8991 2.0845 14 9 -0.0339 -8.2277 2.0530 15 6 -0.7664 -6.0304 2.5444 16 6 -0.5229 -4.6705 2.5789 17 9 -1.4744 -3.8231 3.0280 18 6 2.0413 -0.7238 1.2496 19 1 3.1273 -0.6441 1.2994 20 6 1.4229 -0.0911 2.4979 21 7 2.0729 -0.6336 3.6935 22 6 1.7509 -0.1423 4.9304 23 1 1.0174 0.6448 5.0246 24 6 2.3710 -0.6524 6.0628 25 7 3.2645 -1.6120 5.9479 26 14 1.9373 0.0231 7.7495 27 1 0.9121 1.0880 7.6076 28 1 1.3998 -1.0710 8.5976 29 1 3.1548 0.5888 8.3842 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1280 -0.7447 -1.2364 34 1 1.6942 -0.2001 -2.1391 35 1 1.8485 -2.6668 -2.1648 36 1 0.4136 -2.1419 -1.2511 37 1 3.1013 -3.0035 -0.0854 38 1 1.5627 -3.8950 0.0189 39 1 2.6422 -4.6793 1.3423 40 1 2.1919 -7.0939 1.2990 41 1 -1.7188 -6.4163 2.8767 42 1 0.3571 -0.3170 2.5297 43 1 1.5645 0.9892 2.4658 44 1 2.7315 -1.3407 3.6088 45 1 3.6981 -1.9682 6.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715482218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:17 Heat of formation + Delta-G solvation = -59.998681 kcal Electronic energy + Delta-G solvation = -31314.159192 eV Core-core repulsion = 26968.986063 eV Total energy + Delta-G solvation = -4345.173128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.11001 -50.08840 -41.87826 -39.68685 -38.38958 -36.34888 -34.71812 -33.67681 -32.08491 -31.85303 -31.47969 -28.43936 -27.28961 -26.01109 -24.70612 -24.34851 -24.04634 -22.55283 -21.34346 -19.83226 -19.23561 -19.05228 -18.29374 -17.96741 -17.15823 -16.88609 -16.79549 -16.61163 -16.41170 -16.12500 -15.95108 -15.79491 -15.49326 -15.24856 -15.14446 -14.92145 -14.70321 -14.17837 -13.94764 -13.88404 -13.70655 -13.39124 -13.29375 -13.06634 -12.94618 -12.85514 -12.61273 -12.55762 -12.33538 -12.07461 -12.00105 -11.81247 -11.60694 -11.25858 -11.19856 -10.89582 -10.18752 -10.00803 -9.74921 -9.41435 -8.63048 -7.85582 -5.03581 -0.42696 -0.09137 1.41017 1.43702 1.52637 1.80851 2.04964 2.42712 2.60264 2.73494 3.26749 3.44727 3.49241 3.51191 3.78688 3.82536 3.86942 3.94848 4.02796 4.17221 4.29145 4.39577 4.44656 4.55172 4.59977 4.64758 4.69379 4.79268 4.83456 4.84753 4.89309 4.92399 4.94795 4.99207 5.04542 5.14930 5.26911 5.30397 5.33756 5.41220 5.52063 5.59126 5.61156 5.86417 6.36638 6.59578 7.41886 7.48633 8.22707 8.45624 9.39224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008514 B = 0.005528 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.061962 B = 5064.130029 C = 7295.724062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.106 4.106 5 C -0.131 4.131 6 C 0.090 3.910 7 N -0.599 5.599 8 C 0.515 3.485 9 O -0.495 6.495 10 C -0.178 4.178 11 C -0.030 4.030 12 C -0.150 4.150 13 C 0.145 3.855 14 F -0.126 7.126 15 C -0.197 4.197 16 C 0.146 3.854 17 F -0.138 7.138 18 C 0.153 3.847 19 H 0.067 0.933 20 C 0.161 3.839 21 N -0.704 5.704 22 C -0.207 4.207 23 H 0.058 0.942 24 C -0.083 4.083 25 N -0.971 5.971 26 Si 0.963 3.037 27 H -0.274 1.274 28 H -0.300 1.300 29 H -0.289 1.289 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.171 0.829 40 H 0.186 0.814 41 H 0.165 0.835 42 H 0.028 0.972 43 H 0.008 0.992 44 H 0.367 0.633 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 -9.683 -21.831 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.169 4.169 6 C -0.031 4.031 7 N -0.335 5.335 8 C 0.301 3.699 9 O -0.368 6.368 10 C -0.182 4.182 11 C -0.048 4.048 12 C -0.168 4.168 13 C 0.126 3.874 14 F -0.104 7.104 15 C -0.216 4.216 16 C 0.126 3.874 17 F -0.117 7.117 18 C 0.050 3.950 19 H 0.085 0.915 20 C 0.035 3.965 21 N -0.345 5.345 22 C -0.340 4.340 23 H 0.076 0.924 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.794 3.206 27 H -0.198 1.198 28 H -0.228 1.228 29 H -0.216 1.216 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.188 0.812 40 H 0.203 0.797 41 H 0.183 0.817 42 H 0.046 0.954 43 H 0.026 0.974 44 H 0.199 0.801 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.070 -9.178 -21.190 23.296 hybrid contribution -0.499 0.144 1.843 1.914 sum -3.568 -9.035 -19.348 21.649 Atomic orbital electron populations 1.21794 0.95317 1.01278 1.01211 1.21472 0.96233 0.99717 0.93967 0.89595 1.21525 1.01053 0.95479 0.96331 1.21959 1.01132 0.96053 0.97761 1.22368 1.01437 0.95909 0.83371 1.47747 1.56808 1.10699 1.18269 1.18434 0.81296 0.87097 0.83087 1.91212 1.48347 1.62981 1.34209 1.20374 0.95508 0.95377 1.06980 1.21410 0.98353 0.91755 0.93276 1.21466 0.96532 0.96093 1.02719 1.17489 0.94202 0.77312 0.98445 1.91550 1.94728 1.30284 1.93861 1.21060 1.03150 0.90427 1.06992 1.17591 0.85802 0.87520 0.96490 1.91536 1.62807 1.70974 1.86356 1.21381 0.98095 0.80329 0.95188 0.91533 1.21003 0.96525 0.93530 0.85425 1.42309 1.47144 1.43523 1.01483 1.19464 1.15728 1.12814 0.86000 0.92398 1.25316 1.00976 1.00512 1.00639 1.69801 1.32582 1.32002 1.28032 0.85190 0.77159 0.77172 0.81099 1.19837 1.22832 1.21647 0.94914 0.90795 0.93530 0.90824 0.89805 0.87780 0.92147 0.89487 0.88289 0.81156 0.79690 0.81723 0.95427 0.97437 0.80086 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.22 71.98 0.59 -2.93 16 2 C -0.09 -2.24 2.81 -10.70 -0.03 -2.27 16 3 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.11 -1.68 5.42 30.63 0.17 -1.52 16 5 C -0.13 -1.91 5.74 30.67 0.18 -1.74 16 6 C 0.09 1.67 4.87 86.36 0.42 2.09 16 7 N -0.60 -18.08 2.42 -798.72 -1.93 -20.02 16 8 C 0.51 19.97 6.59 86.71 0.57 20.54 16 9 O -0.49 -25.39 10.07 -3.98 -0.04 -25.43 16 10 C -0.18 -5.64 5.15 -20.05 -0.10 -5.74 16 11 C -0.03 -0.65 7.36 22.51 0.17 -0.48 16 12 C -0.15 -2.59 10.01 22.28 0.22 -2.36 16 13 C 0.15 2.99 7.30 22.46 0.16 3.16 16 14 F -0.13 -2.47 17.26 44.97 0.78 -1.69 16 15 C -0.20 -4.85 9.99 22.32 0.22 -4.63 16 16 C 0.15 4.73 7.24 22.66 0.16 4.90 16 17 F -0.14 -5.41 16.24 44.97 0.73 -4.68 16 18 C 0.15 5.02 2.62 44.97 0.12 5.14 16 19 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 20 C 0.16 7.25 4.04 86.38 0.35 7.60 16 21 N -0.70 -39.25 3.24 -343.45 -1.11 -40.37 16 22 C -0.21 -12.87 9.71 84.03 0.82 -12.05 16 23 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 24 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 25 N -0.97 -63.59 13.06 21.65 0.28 -63.31 16 26 Si 0.96 50.93 29.55 68.60 2.03 52.96 16 27 H -0.27 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 29 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 30 H 0.03 1.00 6.57 -2.39 -0.02 0.99 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.26 5.98 -2.39 -0.01 1.25 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.03 6.34 -2.39 -0.02 1.02 16 37 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.10 1.60 4.70 -2.38 -0.01 1.59 16 39 H 0.17 2.96 6.50 -2.91 -0.02 2.94 16 40 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.03 1.39 5.06 -2.39 -0.01 1.38 16 43 H 0.01 0.36 8.12 -2.38 -0.02 0.34 16 44 H 0.37 21.62 7.10 -92.71 -0.66 20.96 16 45 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -82.07 355.32 5.59 -76.48 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.38 Total: 21.13 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.48 Total: 4.92 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -2.76 Total: -123.69 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.04 Total: -25.43 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 1.51 Total: -6.37 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.03 Total: 52.96 kcal Total: -82.07 5.59 -76.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -82.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds