Wall clock time and date at job start Tue Mar 31 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52482 * 2 1 4 4 C 1.53044 * 109.49731 * 120.08093 * 2 1 3 5 5 C 1.53046 * 109.53830 * 58.58611 * 4 2 1 6 6 C 1.53188 * 109.30947 * 61.36471 * 5 4 2 7 7 N 1.46930 * 108.77948 * 305.36274 * 6 5 4 8 8 C 1.34770 * 120.63078 * 233.58971 * 7 6 5 9 9 O 1.21588 * 119.99500 * 184.25478 * 8 7 6 10 10 C 1.47566 * 120.00609 * 4.25554 * 8 7 6 11 11 C 1.39734 * 120.13519 * 309.17822 * 10 8 7 12 12 C 1.37741 * 119.90094 * 179.76545 * 11 10 8 13 13 C 1.38764 * 120.19373 * 0.53252 * 12 11 10 14 14 F 1.35094 * 119.86276 * 179.72074 * 13 12 11 15 15 C 1.38497 * 120.28140 * 359.69955 * 13 12 11 16 16 C 1.38194 * 120.09414 * 0.04140 * 15 13 12 17 17 F 1.35099 * 120.09734 * 179.97438 * 16 15 13 18 18 C 1.46929 * 118.73404 * 53.61255 * 7 6 5 19 19 H 1.09001 * 109.58974 * 66.31941 * 18 7 6 20 20 C 1.53001 * 109.58497 * 186.60390 * 18 7 6 21 21 N 1.46497 * 109.47294 * 283.56114 * 20 18 7 22 22 C 1.36935 * 120.00160 * 185.38416 * 21 20 18 23 23 H 1.07996 * 119.99928 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99774 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00082 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99517 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46730 * 90.00376 * 26 24 22 28 28 H 1.48500 * 109.46732 * 209.99696 * 26 24 22 29 29 H 1.48497 * 109.47362 * 330.00247 * 26 24 22 30 30 H 1.09005 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47428 * 300.07695 * 1 2 3 32 32 H 1.09002 * 109.47107 * 60.07994 * 1 2 3 33 33 H 1.09001 * 109.46278 * 298.56594 * 4 2 1 34 34 H 1.08996 * 109.45071 * 178.59837 * 4 2 1 35 35 H 1.09001 * 109.49909 * 301.41611 * 5 4 2 36 36 H 1.08995 * 109.49626 * 181.31667 * 5 4 2 37 37 H 1.09007 * 109.58358 * 185.57982 * 6 5 4 38 38 H 1.08994 * 109.70731 * 65.22602 * 6 5 4 39 39 H 1.07999 * 120.05331 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.90699 * 180.27526 * 12 11 10 41 41 H 1.07999 * 119.95371 * 180.02562 * 15 13 12 42 42 H 1.08997 * 109.46881 * 163.56251 * 20 18 7 43 43 H 1.09005 * 109.46759 * 43.56482 * 20 18 7 44 44 H 0.97008 * 119.99683 * 5.39216 * 21 20 18 45 45 H 0.96996 * 119.99738 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5030 -2.1558 1.2660 6 6 2.0140 -2.9040 0.0308 7 7 1.6515 -2.1382 -1.1696 8 6 0.9747 -2.7221 -2.1782 9 8 0.7482 -2.1004 -3.1983 10 6 0.5086 -4.1158 -2.0447 11 6 1.3976 -5.1177 -1.6465 12 6 0.9562 -6.4162 -1.5187 13 6 -0.3660 -6.7343 -1.7949 14 9 -0.7903 -8.0110 -1.6728 15 6 -1.2526 -5.7483 -2.1948 16 6 -0.8236 -4.4407 -2.3217 17 9 -1.6883 -3.4790 -2.7123 18 6 2.0413 -0.7238 -1.2496 19 1 3.1274 -0.6464 -1.3005 20 6 1.4229 -0.0912 -2.4979 21 7 2.1749 -0.5123 -3.6824 22 6 1.8731 0.0166 -4.9089 23 1 1.0809 0.7446 -5.0029 24 6 2.5861 -0.3821 -6.0312 25 7 3.5518 -1.2690 -5.9166 26 14 2.1738 0.3390 -7.7044 27 1 2.9852 1.5622 -7.9297 28 1 2.4780 -0.6584 -8.7618 29 1 0.7309 0.6864 -7.7518 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6988 -0.1959 2.1390 34 1 3.1305 -0.7445 1.2351 35 1 0.4132 -2.1356 1.2541 36 1 1.8480 -2.6628 2.1671 37 1 1.5553 -3.8919 -0.0137 38 1 3.0977 -3.0065 0.0854 39 1 2.4282 -4.8737 -1.4352 40 1 1.6421 -7.1899 -1.2067 41 1 -2.2805 -6.0016 -2.4080 42 1 1.4599 0.9947 -2.4111 43 1 0.3858 -0.4130 -2.5924 44 1 2.8867 -1.1661 -3.5980 45 1 4.0503 -1.5473 -6.7008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715482221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:21 Heat of formation + Delta-G solvation = -42.902108 kcal Electronic energy + Delta-G solvation = -31200.888408 eV Core-core repulsion = 26856.456643 eV Total energy + Delta-G solvation = -4344.431765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.21986 -48.93740 -40.64617 -38.69496 -37.16517 -34.56195 -33.40325 -32.09404 -31.15119 -30.60918 -30.01398 -27.04949 -26.11893 -24.46330 -23.48205 -23.36537 -22.59460 -21.24066 -20.19410 -18.63277 -18.17284 -17.50742 -17.14771 -16.58096 -16.13391 -15.84881 -15.52332 -15.42393 -15.08922 -14.88059 -14.82520 -14.47742 -14.26805 -14.10285 -13.82366 -13.56375 -13.18187 -13.02752 -12.57451 -12.51923 -12.45375 -12.30074 -12.07585 -11.98976 -11.66452 -11.54657 -11.27980 -11.00780 -10.87633 -10.67575 -10.61822 -10.35212 -10.19266 -9.83131 -9.48272 -9.23154 -8.93206 -8.71178 -8.42368 -8.08107 -6.52508 -5.52585 -2.72552 0.59390 0.83492 2.90548 3.18827 3.48045 3.57679 3.61733 3.64145 3.68983 4.22333 4.41238 4.51381 4.64805 4.72399 4.78547 4.85791 4.90287 4.99159 5.08687 5.28056 5.39231 5.47704 5.56479 5.57142 5.70506 5.71706 5.75944 5.77580 5.81803 5.82702 5.90315 5.91294 5.93641 6.00537 6.13464 6.18993 6.30057 6.48615 6.52962 6.55732 6.68941 6.91505 7.28875 7.80298 7.90682 8.65920 8.75797 9.77514 10.38071 10.72521 11.71662 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.005024 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.436982 B = 5571.433797 C = 7510.885358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.100 3.900 7 N -0.604 5.604 8 C 0.520 3.480 9 O -0.425 6.425 10 C -0.154 4.154 11 C -0.037 4.037 12 C -0.170 4.170 13 C 0.138 3.862 14 F -0.132 7.132 15 C -0.199 4.199 16 C 0.174 3.826 17 F -0.115 7.115 18 C 0.148 3.852 19 H 0.072 0.928 20 C 0.158 3.842 21 N -0.700 5.700 22 C -0.206 4.206 23 H 0.064 0.936 24 C -0.022 4.022 25 N -0.939 5.939 26 Si 0.901 3.099 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.285 1.285 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.016 0.984 43 H 0.044 0.956 44 H 0.379 0.621 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -9.049 19.221 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.024 4.024 7 N -0.341 5.341 8 C 0.304 3.696 9 O -0.293 6.293 10 C -0.158 4.158 11 C -0.055 4.055 12 C -0.189 4.189 13 C 0.118 3.882 14 F -0.110 7.110 15 C -0.218 4.218 16 C 0.153 3.847 17 F -0.093 7.093 18 C 0.045 3.955 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.343 5.343 22 C -0.338 4.338 23 H 0.082 0.918 24 C -0.216 4.216 25 N -0.590 5.590 26 Si 0.733 3.267 27 H -0.222 1.222 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.212 0.788 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.648 -8.590 18.452 21.122 hybrid contribution -0.163 -0.157 -0.988 1.014 sum -5.811 -8.748 17.464 20.378 Atomic orbital electron populations 1.21849 0.94926 1.01924 1.01488 1.21479 0.96653 0.99487 0.94333 0.90108 1.21538 1.00491 0.95382 0.97630 1.21957 1.01649 0.96366 0.97455 1.21922 1.00072 0.95589 0.84792 1.47728 1.57643 1.11060 1.17644 1.17942 0.81731 0.85505 0.84450 1.91307 1.51097 1.60749 1.26106 1.20429 0.93085 0.97042 1.05278 1.21111 0.99806 0.90724 0.93908 1.21103 0.94424 0.97953 1.05374 1.17412 0.92674 0.78632 0.99445 1.91528 1.90497 1.35697 1.93292 1.20942 1.02071 0.91152 1.07656 1.17212 0.86475 0.85133 0.95875 1.91604 1.68246 1.61999 1.87414 1.21543 0.98967 0.79092 0.95866 0.91042 1.20982 0.96692 0.94383 0.84886 1.42191 1.39647 1.50120 1.02342 1.19151 1.12597 1.16657 0.85379 0.91758 1.24597 0.99440 1.00215 0.97371 1.69651 1.25237 1.35823 1.28308 0.86250 0.77540 0.77885 0.85004 1.22178 1.22118 1.21066 0.92598 0.93327 0.92006 0.91964 0.91824 0.91230 0.91229 0.89678 0.91503 0.83284 0.83625 0.83127 0.96695 0.93823 0.78771 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.26 37.16 0.31 -1.53 16 2 C -0.10 -1.25 2.75 -90.50 -0.25 -1.50 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.11 -1.10 5.43 -26.68 -0.14 -1.25 16 5 C -0.14 -1.24 5.74 -26.61 -0.15 -1.39 16 6 C 0.10 1.05 5.38 -3.71 -0.02 1.03 16 7 N -0.60 -9.11 2.41 -166.43 -0.40 -9.51 16 8 C 0.52 9.51 6.72 -12.46 -0.08 9.43 16 9 O -0.42 -10.17 10.71 5.29 0.06 -10.12 16 10 C -0.15 -2.31 5.02 -104.91 -0.53 -2.83 16 11 C -0.04 -0.42 7.35 -39.20 -0.29 -0.71 16 12 C -0.17 -1.67 10.01 -39.57 -0.40 -2.06 16 13 C 0.14 1.51 7.30 -39.29 -0.29 1.22 16 14 F -0.13 -1.42 17.26 2.25 0.04 -1.38 16 15 C -0.20 -2.36 9.99 -39.50 -0.39 -2.75 16 16 C 0.17 2.56 7.26 -38.98 -0.28 2.28 16 17 F -0.11 -1.96 16.55 2.25 0.04 -1.92 16 18 C 0.15 2.42 2.60 -67.60 -0.18 2.24 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 20 C 0.16 3.38 3.85 -4.04 -0.02 3.36 16 21 N -0.70 -18.73 3.34 -59.91 -0.20 -18.93 16 22 C -0.21 -6.15 9.82 -15.06 -0.15 -6.30 16 23 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 25 N -0.94 -29.96 13.06 55.49 0.72 -29.24 16 26 Si 0.90 24.00 29.55 -169.99 -5.02 18.97 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 29 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 30 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 6.33 -51.93 -0.33 0.36 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.80 4.52 -51.93 -0.23 0.56 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.15 1.47 7.05 -52.49 -0.37 1.10 16 40 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 43 H 0.04 1.02 5.26 -51.93 -0.27 0.75 16 44 H 0.38 10.74 7.49 -40.82 -0.31 10.44 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -35.15 357.82 -8.27 -43.42 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.94 Total: 4.84 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.95 Total: -1.53 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.12 Total: -57.67 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.15 -8.27 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.514 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds