Wall clock time and date at job start Tue Mar 31 2020 21:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52482 * 2 1 4 4 C 1.53044 * 109.49731 * 120.08093 * 2 1 3 5 5 C 1.53046 * 109.53830 * 58.58611 * 4 2 1 6 6 C 1.53188 * 109.30947 * 61.36471 * 5 4 2 7 7 N 1.46930 * 108.77948 * 305.36274 * 6 5 4 8 8 C 1.34770 * 120.63078 * 233.58971 * 7 6 5 9 9 O 1.21588 * 119.99500 * 184.25478 * 8 7 6 10 10 C 1.47566 * 120.00609 * 4.25554 * 8 7 6 11 11 C 1.39734 * 120.13519 * 309.17822 * 10 8 7 12 12 C 1.37741 * 119.90094 * 179.76545 * 11 10 8 13 13 C 1.38764 * 120.19373 * 0.53252 * 12 11 10 14 14 F 1.35094 * 119.86276 * 179.72074 * 13 12 11 15 15 C 1.38497 * 120.28140 * 359.69955 * 13 12 11 16 16 C 1.38194 * 120.09414 * 0.04140 * 15 13 12 17 17 F 1.35099 * 120.09734 * 179.97438 * 16 15 13 18 18 C 1.46929 * 118.73404 * 53.61255 * 7 6 5 19 19 H 1.09001 * 109.58974 * 66.31941 * 18 7 6 20 20 C 1.53001 * 109.58497 * 186.60390 * 18 7 6 21 21 N 1.46497 * 109.47294 * 283.56114 * 20 18 7 22 22 C 1.36935 * 120.00160 * 185.38416 * 21 20 18 23 23 H 1.07996 * 119.99928 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99774 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00082 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99517 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46730 * 90.00376 * 26 24 22 28 28 H 1.48500 * 109.46732 * 209.99696 * 26 24 22 29 29 H 1.48497 * 109.47362 * 330.00247 * 26 24 22 30 30 H 1.09005 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47428 * 300.07695 * 1 2 3 32 32 H 1.09002 * 109.47107 * 60.07994 * 1 2 3 33 33 H 1.09001 * 109.46278 * 298.56594 * 4 2 1 34 34 H 1.08996 * 109.45071 * 178.59837 * 4 2 1 35 35 H 1.09001 * 109.49909 * 301.41611 * 5 4 2 36 36 H 1.08995 * 109.49626 * 181.31667 * 5 4 2 37 37 H 1.09007 * 109.58358 * 185.57982 * 6 5 4 38 38 H 1.08994 * 109.70731 * 65.22602 * 6 5 4 39 39 H 1.07999 * 120.05331 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.90699 * 180.27526 * 12 11 10 41 41 H 1.07999 * 119.95371 * 180.02562 * 15 13 12 42 42 H 1.08997 * 109.46881 * 163.56251 * 20 18 7 43 43 H 1.09005 * 109.46759 * 43.56482 * 20 18 7 44 44 H 0.97008 * 119.99683 * 5.39216 * 21 20 18 45 45 H 0.96996 * 119.99738 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5030 -2.1558 1.2660 6 6 2.0140 -2.9040 0.0308 7 7 1.6515 -2.1382 -1.1696 8 6 0.9747 -2.7221 -2.1782 9 8 0.7482 -2.1004 -3.1983 10 6 0.5086 -4.1158 -2.0447 11 6 1.3976 -5.1177 -1.6465 12 6 0.9562 -6.4162 -1.5187 13 6 -0.3660 -6.7343 -1.7949 14 9 -0.7903 -8.0110 -1.6728 15 6 -1.2526 -5.7483 -2.1948 16 6 -0.8236 -4.4407 -2.3217 17 9 -1.6883 -3.4790 -2.7123 18 6 2.0413 -0.7238 -1.2496 19 1 3.1274 -0.6464 -1.3005 20 6 1.4229 -0.0912 -2.4979 21 7 2.1749 -0.5123 -3.6824 22 6 1.8731 0.0166 -4.9089 23 1 1.0809 0.7446 -5.0029 24 6 2.5861 -0.3821 -6.0312 25 7 3.5518 -1.2690 -5.9166 26 14 2.1738 0.3390 -7.7044 27 1 2.9852 1.5622 -7.9297 28 1 2.4780 -0.6584 -8.7618 29 1 0.7309 0.6864 -7.7518 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6988 -0.1959 2.1390 34 1 3.1305 -0.7445 1.2351 35 1 0.4132 -2.1356 1.2541 36 1 1.8480 -2.6628 2.1671 37 1 1.5553 -3.8919 -0.0137 38 1 3.0977 -3.0065 0.0854 39 1 2.4282 -4.8737 -1.4352 40 1 1.6421 -7.1899 -1.2067 41 1 -2.2805 -6.0016 -2.4080 42 1 1.4599 0.9947 -2.4111 43 1 0.3858 -0.4130 -2.5924 44 1 2.8867 -1.1661 -3.5980 45 1 4.0503 -1.5473 -6.7008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715482221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:20 Heat of formation + Delta-G solvation = -64.555245 kcal Electronic energy + Delta-G solvation = -31201.827359 eV Core-core repulsion = 26856.456643 eV Total energy + Delta-G solvation = -4345.370716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.14257 -50.09743 -41.88503 -39.71256 -38.42721 -36.36780 -34.70115 -33.68829 -32.12711 -31.86565 -31.51876 -28.45205 -27.28317 -26.01024 -24.70900 -24.35804 -24.09365 -22.57643 -21.34875 -19.80699 -19.26496 -19.05987 -18.32476 -18.04441 -17.18598 -16.94659 -16.78630 -16.66106 -16.42936 -16.18868 -15.87750 -15.79658 -15.49957 -15.21527 -15.10717 -14.95220 -14.81318 -14.19558 -14.01877 -13.83674 -13.70957 -13.42621 -13.31418 -13.09016 -12.94589 -12.80765 -12.62537 -12.56072 -12.36468 -12.12226 -12.02509 -11.82304 -11.63660 -11.28167 -11.21314 -10.88373 -10.25660 -10.07205 -9.73494 -9.42403 -8.68696 -7.85314 -5.04330 -0.41631 -0.11028 1.41464 1.44730 1.52663 1.75355 1.99858 2.33831 2.60478 2.71703 3.24144 3.40804 3.48152 3.50572 3.76781 3.81602 3.85837 3.93495 4.02262 4.14977 4.27541 4.38667 4.43562 4.54061 4.58897 4.63262 4.68175 4.77574 4.80881 4.83279 4.88104 4.90588 4.93801 4.98556 5.03456 5.13792 5.24313 5.28327 5.32655 5.37762 5.51428 5.57086 5.59418 5.83275 6.36929 6.55025 7.39853 7.44976 8.24002 8.47195 9.39684 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.005024 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.436982 B = 5571.433797 C = 7510.885358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.085 0.915 4 C -0.107 4.107 5 C -0.131 4.131 6 C 0.090 3.910 7 N -0.597 5.597 8 C 0.518 3.482 9 O -0.501 6.501 10 C -0.176 4.176 11 C -0.031 4.031 12 C -0.146 4.146 13 C 0.145 3.855 14 F -0.126 7.126 15 C -0.193 4.193 16 C 0.145 3.855 17 F -0.139 7.139 18 C 0.153 3.847 19 H 0.064 0.936 20 C 0.163 3.837 21 N -0.706 5.706 22 C -0.211 4.211 23 H 0.058 0.942 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.965 3.035 27 H -0.283 1.283 28 H -0.296 1.296 29 H -0.281 1.281 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.169 0.831 40 H 0.185 0.815 41 H 0.167 0.833 42 H 0.009 0.991 43 H 0.024 0.976 44 H 0.367 0.633 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -10.866 22.111 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.169 4.169 6 C -0.031 4.031 7 N -0.332 5.332 8 C 0.305 3.695 9 O -0.374 6.374 10 C -0.180 4.180 11 C -0.049 4.049 12 C -0.165 4.165 13 C 0.125 3.875 14 F -0.104 7.104 15 C -0.212 4.212 16 C 0.125 3.875 17 F -0.118 7.118 18 C 0.050 3.950 19 H 0.082 0.918 20 C 0.037 3.963 21 N -0.347 5.347 22 C -0.344 4.344 23 H 0.076 0.924 24 C -0.274 4.274 25 N -0.626 5.626 26 Si 0.795 3.205 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.207 1.207 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.184 0.816 42 H 0.027 0.973 43 H 0.041 0.959 44 H 0.199 0.801 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.097 -10.406 21.434 24.365 hybrid contribution -0.412 0.293 -1.756 1.828 sum -5.509 -10.113 19.677 22.799 Atomic orbital electron populations 1.21791 0.95151 1.01362 1.01320 1.21470 0.96335 0.99684 0.93898 0.89705 1.21531 1.00987 0.95585 0.96343 1.21957 1.01202 0.95964 0.97743 1.22325 1.01420 0.96009 0.83352 1.47855 1.56165 1.10753 1.18408 1.18542 0.80496 0.86592 0.83907 1.91264 1.54405 1.62855 1.28917 1.20314 0.93953 0.95992 1.07753 1.21299 0.99950 0.90548 0.93128 1.21453 0.94324 0.97840 1.02868 1.17480 0.92937 0.78468 0.98607 1.91554 1.90522 1.35214 1.93117 1.21058 1.03214 0.90051 1.06876 1.17527 0.86498 0.85826 0.97678 1.91535 1.68995 1.63192 1.88070 1.21385 0.98105 0.80319 0.95232 0.91764 1.20962 0.95583 0.94087 0.85668 1.42248 1.39747 1.49725 1.02950 1.19451 1.11783 1.16032 0.87098 0.92426 1.25338 0.99978 1.01338 1.00774 1.69805 1.26483 1.37529 1.28779 0.85241 0.77425 0.77245 0.80567 1.21057 1.22311 1.20651 0.93381 0.90636 0.94944 0.89695 0.90953 0.91955 0.87767 0.88140 0.89675 0.81400 0.79723 0.81579 0.97345 0.95860 0.80114 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.26 71.98 0.59 -2.91 16 2 C -0.09 -2.28 2.75 -10.72 -0.03 -2.31 16 3 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.11 -1.73 5.43 30.62 0.17 -1.56 16 5 C -0.13 -1.90 5.74 30.67 0.18 -1.73 16 6 C 0.09 1.67 5.38 86.36 0.46 2.14 16 7 N -0.60 -18.02 2.41 -798.71 -1.93 -19.95 16 8 C 0.52 19.76 6.72 86.71 0.58 20.34 16 9 O -0.50 -25.73 10.71 -3.99 -0.04 -25.77 16 10 C -0.18 -5.29 5.02 -20.05 -0.10 -5.39 16 11 C -0.03 -0.64 7.35 22.51 0.17 -0.47 16 12 C -0.15 -2.31 10.01 22.28 0.22 -2.09 16 13 C 0.14 2.73 7.30 22.46 0.16 2.90 16 14 F -0.13 -2.28 17.26 44.97 0.78 -1.50 16 15 C -0.19 -4.36 9.99 22.32 0.22 -4.13 16 16 C 0.14 4.38 7.26 22.66 0.16 4.54 16 17 F -0.14 -5.12 16.55 44.97 0.74 -4.38 16 18 C 0.15 5.10 2.60 44.97 0.12 5.22 16 19 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 20 C 0.16 7.44 3.85 86.38 0.33 7.77 16 21 N -0.71 -39.91 3.34 -343.45 -1.15 -41.06 16 22 C -0.21 -13.20 9.82 84.03 0.83 -12.37 16 23 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 24 C -0.08 -5.27 5.50 84.86 0.47 -4.80 16 25 N -0.97 -64.21 13.06 21.65 0.28 -63.93 16 26 Si 0.96 51.01 29.55 68.60 2.03 53.04 16 27 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 28 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 29 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 30 H 0.05 1.28 5.97 -2.38 -0.01 1.26 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 0.99 6.72 -2.39 -0.02 0.97 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.04 6.33 -2.39 -0.02 1.03 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.58 4.52 -2.38 -0.01 1.57 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.17 2.79 7.05 -2.91 -0.02 2.77 16 40 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.01 0.40 8.05 -2.39 -0.02 0.39 16 43 H 0.02 1.20 5.26 -2.38 -0.01 1.18 16 44 H 0.37 21.97 7.49 -92.70 -0.69 21.28 16 45 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -82.85 357.82 5.59 -77.26 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.34 Total: 21.14 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.53 Total: 5.15 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -2.79 Total: -124.93 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.52 Total: -5.88 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.03 Total: 53.04 kcal Total: -82.85 5.59 -77.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.708 kcal (2) G-P(sol) polarization free energy of solvation -82.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds