Wall clock time and date at job start Tue Mar 31 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.52913 * 2 1 4 4 C 1.53048 * 109.49499 * 120.08136 * 2 1 3 5 5 C 1.53356 * 109.60412 * 181.32465 * 4 2 1 6 6 C 1.53192 * 109.14680 * 298.70719 * 5 4 2 7 7 N 1.46926 * 108.89399 * 54.58183 * 6 5 4 8 8 C 1.34779 * 120.62810 * 126.29448 * 7 6 5 9 9 O 1.21589 * 119.99477 * 174.18277 * 8 7 6 10 10 C 1.47574 * 120.00319 * 354.18446 * 8 7 6 11 11 C 1.39733 * 120.13681 * 326.38750 * 10 8 7 12 12 C 1.37735 * 119.90123 * 179.97438 * 11 10 8 13 13 C 1.38764 * 120.19252 * 359.97438 * 12 11 10 14 14 F 1.35103 * 119.85707 * 180.02562 * 13 12 11 15 15 C 1.38487 * 120.28391 * 359.97438 * 13 12 11 16 16 C 1.38199 * 120.09544 * 359.78191 * 15 13 12 17 17 F 1.35094 * 120.10034 * 180.25662 * 16 15 13 18 18 C 1.46918 * 118.73930 * 306.31751 * 7 6 5 19 19 H 1.09001 * 109.59077 * 293.67818 * 18 7 6 20 20 C 1.53003 * 109.58618 * 173.39313 * 18 7 6 21 21 N 1.46500 * 109.46768 * 79.15488 * 20 18 7 22 22 C 1.36943 * 119.99790 * 174.48314 * 21 20 18 23 23 H 1.08004 * 119.99966 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99668 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00315 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99599 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47469 * 89.99706 * 26 24 22 28 28 H 1.48508 * 109.47084 * 209.99929 * 26 24 22 29 29 H 1.48502 * 109.47280 * 329.99776 * 26 24 22 30 30 H 1.08994 * 109.47461 * 180.08223 * 1 2 3 31 31 H 1.08999 * 109.47119 * 300.08829 * 1 2 3 32 32 H 1.09005 * 109.46523 * 60.08344 * 1 2 3 33 33 H 1.08992 * 109.45672 * 301.33145 * 4 2 1 34 34 H 1.08995 * 109.46170 * 61.29553 * 4 2 1 35 35 H 1.09005 * 109.68193 * 178.74725 * 5 4 2 36 36 H 1.08989 * 109.47727 * 58.54819 * 5 4 2 37 37 H 1.09005 * 109.59047 * 294.71965 * 6 5 4 38 38 H 1.09001 * 109.58553 * 174.43819 * 6 5 4 39 39 H 1.07998 * 120.05122 * 359.97438 * 11 10 8 40 40 H 1.07998 * 119.90879 * 179.97438 * 12 11 10 41 41 H 1.08009 * 119.95282 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47129 * 199.14771 * 20 18 7 43 43 H 1.08994 * 109.47139 * 319.14825 * 20 18 7 44 44 H 0.96991 * 120.00216 * 354.47576 * 21 20 18 45 45 H 0.97000 * 120.00409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5739 -0.6958 1.2678 6 6 4.1052 -1.4269 0.0309 7 7 3.5046 -0.8293 -1.1695 8 6 4.2812 -0.3859 -2.1778 9 8 3.7720 0.0088 -3.2090 10 6 5.7495 -0.3794 -2.0304 11 6 6.3282 -0.1367 -0.7819 12 6 7.6992 -0.1324 -0.6498 13 6 8.5074 -0.3688 -1.7527 14 9 9.8514 -0.3635 -1.6152 15 6 7.9422 -0.6113 -2.9935 16 6 6.5679 -0.6234 -3.1386 17 9 6.0163 -0.8651 -4.3479 18 6 2.0414 -0.7240 -1.2496 19 1 1.6053 -1.7217 -1.3005 20 6 1.6519 0.0704 -2.4979 21 7 1.7352 -0.7980 -3.6749 22 6 1.3228 -0.3368 -4.8966 23 1 0.9356 0.6670 -4.9923 24 6 1.4023 -1.1594 -6.0119 25 7 1.8745 -2.3823 -5.8953 26 14 0.8390 -0.5305 -7.6782 27 1 1.9815 0.1105 -8.3775 28 1 0.3350 -1.6663 -8.4914 29 1 -0.2475 0.4643 -7.4904 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3632 0.5126 -0.8908 33 1 1.6582 -0.2245 2.1389 34 1 1.6967 -1.7573 1.2354 35 1 3.9386 -1.1911 2.1677 36 1 3.9191 0.3379 1.2557 37 1 3.8374 -2.4820 0.0869 38 1 5.1897 -1.3271 -0.0149 39 1 5.7014 0.0472 0.0781 40 1 8.1466 0.0556 0.3151 41 1 8.5763 -0.7951 -3.8483 42 1 0.6319 0.4393 -2.3902 43 1 2.3322 0.9132 -2.6191 44 1 2.0826 -1.6994 -3.5889 45 1 1.9304 -2.9570 -6.6747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715482224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:24 Heat of formation + Delta-G solvation = -33.641984 kcal Electronic energy + Delta-G solvation = -30981.862241 eV Core-core repulsion = 26637.832025 eV Total energy + Delta-G solvation = -4344.030216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.21396 -48.70359 -40.64928 -38.59366 -37.17217 -34.72867 -33.57812 -32.15029 -31.17218 -30.69322 -30.05466 -27.01051 -26.16845 -24.33749 -23.44250 -23.08928 -22.40692 -20.99735 -20.41589 -19.26476 -18.25191 -17.39383 -17.11598 -16.60642 -16.08524 -15.79345 -15.52841 -15.13778 -15.09079 -14.94371 -14.89464 -14.66254 -14.31514 -13.89057 -13.54224 -13.38546 -13.08616 -12.93952 -12.82935 -12.56071 -12.34915 -12.27472 -12.04698 -11.89529 -11.66733 -11.57429 -11.36014 -11.01162 -10.85218 -10.67390 -10.61801 -10.55343 -10.14952 -9.78682 -9.48035 -9.16996 -8.89193 -8.66314 -8.49977 -8.07852 -6.52446 -5.51788 -2.70892 0.54184 0.85523 2.85928 3.18401 3.57641 3.62637 3.63378 3.64044 3.72759 4.27720 4.38262 4.52456 4.63295 4.69853 4.76201 4.82133 4.86739 4.96829 5.01475 5.27948 5.37914 5.51020 5.53009 5.59534 5.68142 5.69967 5.74970 5.77830 5.80035 5.82916 5.86838 5.88395 5.89926 6.00969 6.07372 6.16130 6.31578 6.42504 6.55702 6.59843 6.68176 6.93907 7.28833 7.79806 7.90615 8.66203 8.74514 9.77716 10.38551 10.72844 11.72060 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005197 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.025660 B = 5386.690846 C = 8130.259562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.081 3.919 7 N -0.607 5.607 8 C 0.520 3.480 9 O -0.429 6.429 10 C -0.166 4.166 11 C -0.050 4.050 12 C -0.177 4.177 13 C 0.140 3.860 14 F -0.132 7.132 15 C -0.202 4.202 16 C 0.186 3.814 17 F -0.099 7.099 18 C 0.149 3.851 19 H 0.071 0.929 20 C 0.153 3.847 21 N -0.699 5.699 22 C -0.207 4.207 23 H 0.065 0.935 24 C -0.020 4.020 25 N -0.935 5.935 26 Si 0.901 3.099 27 H -0.293 1.293 28 H -0.295 1.295 29 H -0.285 1.285 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.022 0.978 43 H 0.042 0.958 44 H 0.379 0.621 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 3.168 19.641 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.042 4.042 7 N -0.343 5.343 8 C 0.305 3.695 9 O -0.298 6.298 10 C -0.171 4.171 11 C -0.068 4.068 12 C -0.196 4.196 13 C 0.121 3.879 14 F -0.110 7.110 15 C -0.222 4.222 16 C 0.165 3.835 17 F -0.076 7.076 18 C 0.046 3.954 19 H 0.089 0.911 20 C 0.026 3.974 21 N -0.341 5.341 22 C -0.339 4.339 23 H 0.083 0.917 24 C -0.215 4.215 25 N -0.586 5.586 26 Si 0.733 3.267 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.213 0.787 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.693 3.493 18.824 21.459 hybrid contribution 0.234 -0.174 -1.096 1.135 sum 9.928 3.319 17.727 20.587 Atomic orbital electron populations 1.21852 0.94299 1.02230 1.02034 1.21467 0.96180 0.99870 0.94281 0.90916 1.21620 0.94734 1.01008 0.97655 1.22003 0.96792 1.01067 0.97576 1.22320 0.99706 0.97471 0.84690 1.47718 1.06387 1.62310 1.17925 1.17933 0.85050 0.82089 0.84408 1.91267 1.71755 1.41517 1.25268 1.20452 0.95661 1.07556 0.93434 1.21332 0.94099 0.95096 0.96286 1.21067 0.93550 1.06199 0.98741 1.17435 0.77131 0.99711 0.93670 1.91528 1.29402 1.93657 1.96458 1.21021 0.94096 1.08554 0.98537 1.17335 0.89784 0.95303 0.81117 1.91730 1.85483 1.90088 1.40341 1.21566 0.78152 0.99873 0.95814 0.91078 1.21066 0.96825 0.94490 0.85023 1.42184 1.75091 1.13601 1.03196 1.19152 1.31666 0.97167 0.85942 0.91743 1.24607 1.03013 0.96433 0.97445 1.69653 1.52972 1.07285 1.28662 0.86257 0.78015 0.77253 0.85160 1.22117 1.22132 1.21058 0.92525 0.92910 0.91429 0.91878 0.91730 0.90843 0.91576 0.91621 0.88240 0.82538 0.83767 0.83046 0.96109 0.94087 0.78730 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.00 37.16 0.33 -1.41 16 2 C -0.10 -1.21 2.34 -90.49 -0.21 -1.43 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.07 5.17 -26.52 -0.14 -1.21 16 5 C -0.14 -1.13 5.77 -26.45 -0.15 -1.28 16 6 C 0.08 0.87 5.52 -3.71 -0.02 0.85 16 7 N -0.61 -9.33 2.97 -166.42 -0.49 -9.82 16 8 C 0.52 9.64 7.04 -12.45 -0.09 9.55 16 9 O -0.43 -10.31 10.26 5.29 0.05 -10.25 16 10 C -0.17 -2.51 5.45 -104.91 -0.57 -3.08 16 11 C -0.05 -0.52 7.39 -39.21 -0.29 -0.81 16 12 C -0.18 -1.63 10.01 -39.57 -0.40 -2.02 16 13 C 0.14 1.54 7.30 -39.30 -0.29 1.25 16 14 F -0.13 -1.42 17.26 2.25 0.04 -1.38 16 15 C -0.20 -2.57 9.99 -39.50 -0.39 -2.96 16 16 C 0.19 2.99 7.24 -38.97 -0.28 2.71 16 17 F -0.10 -2.04 16.08 2.25 0.04 -2.01 16 18 C 0.15 2.45 2.37 -67.60 -0.16 2.29 16 19 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 20 C 0.15 3.28 4.89 -4.04 -0.02 3.26 16 21 N -0.70 -18.81 3.46 -59.91 -0.21 -19.01 16 22 C -0.21 -6.20 9.89 -15.06 -0.15 -6.35 16 23 H 0.06 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 25 N -0.94 -30.09 13.06 55.49 0.72 -29.36 16 26 Si 0.90 24.04 29.55 -169.99 -5.02 19.01 16 27 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 29 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.53 7.63 -51.94 -0.40 0.13 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.93 3.50 -51.95 -0.18 0.74 16 39 H 0.16 1.28 5.00 -52.49 -0.26 1.02 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.02 0.45 6.01 -51.93 -0.31 0.14 16 43 H 0.04 0.97 5.88 -51.97 -0.31 0.66 16 44 H 0.38 10.96 7.58 -40.82 -0.31 10.65 16 45 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -35.49 358.10 -8.26 -43.76 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.87 Total: 5.02 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.92 Total: -1.35 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.02 Total: -58.20 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.49 -8.26 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.114 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds