Wall clock time and date at job start Tue Mar 31 2020 21:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.52913 * 2 1 4 4 C 1.53048 * 109.49499 * 120.08136 * 2 1 3 5 5 C 1.53356 * 109.60412 * 181.32465 * 4 2 1 6 6 C 1.53192 * 109.14680 * 298.70719 * 5 4 2 7 7 N 1.46926 * 108.89399 * 54.58183 * 6 5 4 8 8 C 1.34779 * 120.62810 * 126.29448 * 7 6 5 9 9 O 1.21589 * 119.99477 * 174.18277 * 8 7 6 10 10 C 1.47574 * 120.00319 * 354.18446 * 8 7 6 11 11 C 1.39733 * 120.13681 * 326.38750 * 10 8 7 12 12 C 1.37735 * 119.90123 * 179.97438 * 11 10 8 13 13 C 1.38764 * 120.19252 * 359.97438 * 12 11 10 14 14 F 1.35103 * 119.85707 * 180.02562 * 13 12 11 15 15 C 1.38487 * 120.28391 * 359.97438 * 13 12 11 16 16 C 1.38199 * 120.09544 * 359.78191 * 15 13 12 17 17 F 1.35094 * 120.10034 * 180.25662 * 16 15 13 18 18 C 1.46918 * 118.73930 * 306.31751 * 7 6 5 19 19 H 1.09001 * 109.59077 * 293.67818 * 18 7 6 20 20 C 1.53003 * 109.58618 * 173.39313 * 18 7 6 21 21 N 1.46500 * 109.46768 * 79.15488 * 20 18 7 22 22 C 1.36943 * 119.99790 * 174.48314 * 21 20 18 23 23 H 1.08004 * 119.99966 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99668 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00315 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99599 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47469 * 89.99706 * 26 24 22 28 28 H 1.48508 * 109.47084 * 209.99929 * 26 24 22 29 29 H 1.48502 * 109.47280 * 329.99776 * 26 24 22 30 30 H 1.08994 * 109.47461 * 180.08223 * 1 2 3 31 31 H 1.08999 * 109.47119 * 300.08829 * 1 2 3 32 32 H 1.09005 * 109.46523 * 60.08344 * 1 2 3 33 33 H 1.08992 * 109.45672 * 301.33145 * 4 2 1 34 34 H 1.08995 * 109.46170 * 61.29553 * 4 2 1 35 35 H 1.09005 * 109.68193 * 178.74725 * 5 4 2 36 36 H 1.08989 * 109.47727 * 58.54819 * 5 4 2 37 37 H 1.09005 * 109.59047 * 294.71965 * 6 5 4 38 38 H 1.09001 * 109.58553 * 174.43819 * 6 5 4 39 39 H 1.07998 * 120.05122 * 359.97438 * 11 10 8 40 40 H 1.07998 * 119.90879 * 179.97438 * 12 11 10 41 41 H 1.08009 * 119.95282 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47129 * 199.14771 * 20 18 7 43 43 H 1.08994 * 109.47139 * 319.14825 * 20 18 7 44 44 H 0.96991 * 120.00216 * 354.47576 * 21 20 18 45 45 H 0.97000 * 120.00409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5739 -0.6958 1.2678 6 6 4.1052 -1.4269 0.0309 7 7 3.5046 -0.8293 -1.1695 8 6 4.2812 -0.3859 -2.1778 9 8 3.7720 0.0088 -3.2090 10 6 5.7495 -0.3794 -2.0304 11 6 6.3282 -0.1367 -0.7819 12 6 7.6992 -0.1324 -0.6498 13 6 8.5074 -0.3688 -1.7527 14 9 9.8514 -0.3635 -1.6152 15 6 7.9422 -0.6113 -2.9935 16 6 6.5679 -0.6234 -3.1386 17 9 6.0163 -0.8651 -4.3479 18 6 2.0414 -0.7240 -1.2496 19 1 1.6053 -1.7217 -1.3005 20 6 1.6519 0.0704 -2.4979 21 7 1.7352 -0.7980 -3.6749 22 6 1.3228 -0.3368 -4.8966 23 1 0.9356 0.6670 -4.9923 24 6 1.4023 -1.1594 -6.0119 25 7 1.8745 -2.3823 -5.8953 26 14 0.8390 -0.5305 -7.6782 27 1 1.9815 0.1105 -8.3775 28 1 0.3350 -1.6663 -8.4914 29 1 -0.2475 0.4643 -7.4904 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3632 0.5126 -0.8908 33 1 1.6582 -0.2245 2.1389 34 1 1.6967 -1.7573 1.2354 35 1 3.9386 -1.1911 2.1677 36 1 3.9191 0.3379 1.2557 37 1 3.8374 -2.4820 0.0869 38 1 5.1897 -1.3271 -0.0149 39 1 5.7014 0.0472 0.0781 40 1 8.1466 0.0556 0.3151 41 1 8.5763 -0.7951 -3.8483 42 1 0.6319 0.4393 -2.3902 43 1 2.3322 0.9132 -2.6191 44 1 2.0826 -1.6994 -3.5889 45 1 1.9304 -2.9570 -6.6747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715482224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:23 Heat of formation + Delta-G solvation = -56.847999 kcal Electronic energy + Delta-G solvation = -30982.868529 eV Core-core repulsion = 26637.832025 eV Total energy + Delta-G solvation = -4345.036504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.11308 -50.07619 -41.88726 -39.64868 -38.42847 -36.42666 -34.96948 -33.66977 -32.18683 -32.03007 -31.51925 -28.46850 -27.23319 -25.96904 -24.62430 -24.32340 -23.76089 -22.23968 -21.49398 -20.46423 -19.29009 -19.15638 -18.31037 -18.06720 -17.20389 -16.88196 -16.73846 -16.65122 -16.36116 -16.17116 -16.02208 -15.97760 -15.49981 -15.42232 -15.09877 -14.50040 -14.48415 -14.19767 -14.00951 -13.84222 -13.68202 -13.40898 -13.33831 -13.01755 -12.93137 -12.87268 -12.77759 -12.52686 -12.32933 -12.11429 -11.90962 -11.81600 -11.59864 -11.47434 -11.09051 -10.92168 -10.17632 -10.00641 -9.87885 -9.42735 -8.70332 -7.85619 -5.05542 -0.48571 -0.12041 1.39583 1.44590 1.51352 1.72541 1.96932 2.44595 2.59700 2.72548 3.25797 3.37825 3.46640 3.51033 3.76786 3.80538 3.84108 3.92265 4.01692 4.12746 4.29431 4.34429 4.41983 4.58683 4.59479 4.62496 4.65777 4.77216 4.81376 4.84129 4.86272 4.90374 4.94993 5.00037 5.06913 5.16115 5.27742 5.31738 5.32683 5.45328 5.49995 5.56465 5.59965 5.82076 6.35772 6.53125 7.37344 7.42916 8.23251 8.45076 9.39503 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005197 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.025660 B = 5386.690846 C = 8130.259562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.071 3.929 7 N -0.602 5.602 8 C 0.516 3.484 9 O -0.504 6.504 10 C -0.185 4.185 11 C -0.031 4.031 12 C -0.146 4.146 13 C 0.150 3.850 14 F -0.125 7.125 15 C -0.201 4.201 16 C 0.144 3.856 17 F -0.142 7.142 18 C 0.154 3.846 19 H 0.053 0.947 20 C 0.157 3.843 21 N -0.708 5.708 22 C -0.211 4.211 23 H 0.061 0.939 24 C -0.086 4.086 25 N -0.974 5.974 26 Si 0.966 3.034 27 H -0.298 1.298 28 H -0.292 1.292 29 H -0.268 1.268 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.191 0.809 40 H 0.195 0.805 41 H 0.159 0.841 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.364 0.636 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 4.073 24.364 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.166 4.166 6 C -0.050 4.050 7 N -0.337 5.337 8 C 0.303 3.697 9 O -0.378 6.378 10 C -0.189 4.189 11 C -0.049 4.049 12 C -0.164 4.164 13 C 0.130 3.870 14 F -0.103 7.103 15 C -0.221 4.221 16 C 0.123 3.877 17 F -0.120 7.120 18 C 0.051 3.949 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.348 5.348 22 C -0.343 4.343 23 H 0.079 0.921 24 C -0.276 4.276 25 N -0.628 5.628 26 Si 0.796 3.204 27 H -0.226 1.226 28 H -0.219 1.219 29 H -0.193 1.193 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.207 0.793 40 H 0.212 0.788 41 H 0.177 0.823 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.195 0.805 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.433 4.421 23.647 26.635 hybrid contribution -0.111 -0.415 -2.377 2.415 sum 11.322 4.005 21.270 24.427 Atomic orbital electron populations 1.21841 0.94095 1.02131 1.02203 1.21425 0.96314 0.99617 0.93496 0.90872 1.21631 0.95865 1.00710 0.96487 1.22027 0.95575 1.01804 0.97181 1.22737 1.00729 0.97749 0.83758 1.47883 1.05779 1.61204 1.18807 1.18599 0.86783 0.80435 0.83898 1.91229 1.73391 1.45211 1.27957 1.20350 0.93521 1.09766 0.95282 1.21627 0.95142 0.93223 0.94920 1.21548 0.92408 1.02526 0.99927 1.17529 0.77528 0.98543 0.93363 1.91560 1.28990 1.93441 1.96336 1.21078 0.92631 1.08229 1.00144 1.17808 0.91368 0.98307 0.80183 1.91617 1.86339 1.91073 1.42963 1.21415 0.79310 0.98543 0.95629 0.92915 1.21086 0.96157 0.94048 0.85617 1.42253 1.75105 1.13475 1.03968 1.19482 1.30498 0.96816 0.87542 0.92054 1.25390 1.04349 0.96873 1.01022 1.69827 1.55317 1.08537 1.29083 0.85219 0.77616 0.76907 0.80631 1.22626 1.21886 1.19303 0.92787 0.89941 0.93968 0.89125 0.91858 0.86988 0.90361 0.91521 0.86388 0.79251 0.78819 0.82337 0.96196 0.96012 0.80525 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.00 71.98 0.65 -2.65 16 2 C -0.09 -2.05 2.34 -10.71 -0.03 -2.08 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 4 C -0.11 -1.63 5.17 30.73 0.16 -1.47 16 5 C -0.13 -1.43 5.77 30.78 0.18 -1.25 16 6 C 0.07 1.30 5.52 86.36 0.48 1.77 16 7 N -0.60 -18.47 2.97 -798.69 -2.37 -20.84 16 8 C 0.52 19.96 7.04 86.71 0.61 20.57 16 9 O -0.50 -26.19 10.26 -4.00 -0.04 -26.23 16 10 C -0.18 -5.57 5.45 -20.05 -0.11 -5.68 16 11 C -0.03 -0.54 7.39 22.51 0.17 -0.37 16 12 C -0.15 -1.89 10.01 22.28 0.22 -1.67 16 13 C 0.15 2.77 7.30 22.46 0.16 2.94 16 14 F -0.12 -2.21 17.26 44.97 0.78 -1.43 16 15 C -0.20 -5.01 9.99 22.32 0.22 -4.79 16 16 C 0.14 4.86 7.24 22.66 0.16 5.02 16 17 F -0.14 -6.48 16.08 44.97 0.72 -5.76 16 18 C 0.15 5.23 2.37 44.98 0.11 5.33 16 19 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 20 C 0.16 7.18 4.89 86.38 0.42 7.61 16 21 N -0.71 -40.93 3.46 -343.44 -1.19 -42.12 16 22 C -0.21 -13.37 9.89 84.03 0.83 -12.53 16 23 H 0.06 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.09 -5.52 5.50 84.86 0.47 -5.06 16 25 N -0.97 -66.40 13.06 21.65 0.28 -66.11 16 26 Si 0.97 51.87 29.55 68.60 2.03 53.89 16 27 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 28 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 29 H -0.27 -13.48 7.11 99.48 0.71 -12.78 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.16 6.30 -2.38 -0.02 1.14 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.08 0.76 7.63 -2.39 -0.02 0.74 16 37 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.12 1.69 3.50 -2.40 -0.01 1.68 16 39 H 0.19 2.00 5.00 -2.91 -0.01 1.98 16 40 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.02 0.92 6.01 -2.39 -0.01 0.90 16 43 H 0.02 1.11 5.88 -3.02 -0.02 1.10 16 44 H 0.36 22.73 7.58 -92.71 -0.70 22.03 16 45 H 0.24 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -88.07 358.10 5.24 -82.82 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.33 Total: 20.07 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 4.70 Total: 5.70 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -3.28 Total: -129.08 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.23 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.50 Total: -7.19 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.03 Total: 53.89 kcal Total: -88.07 5.24 -82.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.977 kcal (2) G-P(sol) polarization free energy of solvation -88.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds