Wall clock time and date at job start Tue Mar 31 2020 21:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 O 1.42898 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99627 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46742 * 180.02562 * 5 4 3 7 7 O 1.21288 * 120.00095 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00374 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65221 * 179.97438 * 8 6 5 10 10 C 1.54905 * 104.92834 * 155.83963 * 9 8 6 11 11 H 1.09002 * 111.00852 * 155.13877 * 10 9 8 12 12 C 1.53007 * 111.00473 * 278.99353 * 10 9 8 13 13 N 1.46500 * 109.46764 * 293.54383 * 12 10 9 14 14 C 1.36941 * 119.99721 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99691 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00317 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99664 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47480 * 59.99851 * 18 16 14 20 20 H 1.48502 * 109.47313 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47173 * 299.99888 * 18 16 14 22 22 C 1.55448 * 101.45165 * 37.00468 * 10 9 8 23 23 H 1.08998 * 110.85957 * 82.96191 * 22 10 9 24 24 C 1.53001 * 110.70895 * 206.14261 * 22 10 9 25 25 F 1.39902 * 109.47154 * 175.00047 * 24 22 10 26 26 F 1.39892 * 109.47275 * 295.00585 * 24 22 10 27 27 F 1.39903 * 109.47003 * 55.00590 * 24 22 10 28 28 C 1.47026 * 125.64203 * 0.02595 * 8 6 5 29 29 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47431 * 300.00134 * 1 2 3 31 31 H 1.09005 * 109.46839 * 60.00048 * 1 2 3 32 32 H 1.08997 * 109.47431 * 239.99866 * 2 1 3 33 33 H 1.09002 * 109.47312 * 119.99742 * 2 1 3 34 34 H 1.08997 * 109.47040 * 59.99626 * 3 2 1 35 35 H 1.09002 * 109.46780 * 300.00068 * 3 2 1 36 36 H 1.09001 * 109.47497 * 60.00403 * 5 4 3 37 37 H 1.08995 * 109.47511 * 299.99510 * 5 4 3 38 38 H 1.09002 * 110.36926 * 274.73432 * 9 8 6 39 39 H 1.08995 * 110.36556 * 36.94716 * 9 8 6 40 40 H 1.08998 * 109.47202 * 53.54667 * 12 10 9 41 41 H 1.09001 * 109.47002 * 173.54406 * 12 10 9 42 42 H 0.97000 * 120.00236 * 359.97438 * 13 12 10 43 43 H 0.97002 * 120.00350 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.88266 * 300.45023 * 28 8 6 45 45 H 1.09000 * 109.88221 * 61.61840 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0501 2.7481 0.0001 6 6 5.5524 2.6291 0.0001 7 8 6.0741 1.5341 0.0011 8 7 6.3165 3.7394 0.0002 9 6 7.7904 3.7683 0.0008 10 6 8.1629 5.1413 -0.6119 11 1 9.1494 5.4634 -0.2785 12 6 8.0899 5.0981 -2.1397 13 7 9.1300 4.2031 -2.6530 14 6 9.2580 4.0051 -4.0020 15 1 8.5926 4.5089 -4.6873 16 6 10.2432 3.1567 -4.4884 17 7 11.0538 2.5423 -3.6531 18 14 10.4183 2.8870 -6.3285 19 1 10.7010 4.1839 -6.9942 20 1 11.5359 1.9437 -6.5864 21 1 9.1569 2.3184 -6.8678 22 6 7.0485 6.0532 -0.0263 23 1 7.3053 6.3819 0.9807 24 6 6.7983 7.2557 -0.9386 25 9 5.7168 7.9957 -0.4487 26 9 7.9402 8.0632 -0.9696 27 9 6.5089 6.8075 -2.2320 28 6 5.8178 5.1225 0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7282 3.2895 0.8896 37 1 3.7290 3.2884 -0.8904 38 1 8.1709 3.6916 1.0194 39 1 8.1858 2.9591 -0.6130 40 1 7.1106 4.7308 -2.4464 41 1 8.2434 6.1005 -2.5392 42 1 9.7279 3.7509 -2.0375 43 1 11.7425 1.9497 -3.9930 44 1 5.2031 5.2953 -0.8826 45 1 5.2340 5.3057 0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717906189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:52 Heat of formation + Delta-G solvation = -211.305799 kcal Electronic energy + Delta-G solvation = -30924.050931 eV Core-core repulsion = 26141.547409 eV Total energy + Delta-G solvation = -4782.503522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.19366 -47.68200 -47.57187 -40.25557 -38.50290 -37.34860 -34.57882 -33.90732 -32.63501 -31.12465 -29.67829 -28.22047 -26.13856 -25.86182 -25.07323 -23.21399 -22.05370 -21.79843 -20.37991 -19.59509 -18.55168 -18.27758 -17.70487 -17.16684 -16.93496 -16.69274 -16.40905 -16.08424 -15.33123 -14.96875 -14.75203 -14.50067 -14.32817 -14.13998 -14.03791 -13.90613 -13.81239 -13.65795 -13.54696 -13.38301 -12.99507 -12.78312 -12.70443 -12.37293 -12.30714 -12.24398 -12.07636 -11.93743 -11.48323 -11.18803 -11.13835 -11.07159 -10.80315 -10.71793 -10.52164 -10.05684 -9.89552 -9.73577 -9.66160 -8.85010 -8.67469 -6.91502 -5.73829 -3.03013 2.45746 2.62705 2.77907 3.47540 3.50509 3.52230 3.53898 3.65233 3.78310 3.91961 4.36152 4.51078 4.56549 4.66775 4.67818 4.76220 4.77289 4.87994 5.00711 5.04266 5.07185 5.13349 5.17748 5.19024 5.20621 5.43828 5.50628 5.59354 5.70367 5.70632 5.85970 5.93479 5.94361 6.02632 6.20761 6.32043 6.58991 6.71299 6.87633 7.42604 7.72715 8.19742 8.44114 9.55568 10.09860 10.44689 11.48896 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.003838 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.582078 B = 7294.033139 C = 9706.558433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.050 3.950 6 C 0.531 3.469 7 O -0.506 6.506 8 N -0.613 5.613 9 C 0.116 3.884 10 C -0.102 4.102 11 H 0.108 0.892 12 C 0.151 3.849 13 N -0.729 5.729 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.147 4.147 23 H 0.130 0.870 24 C 0.463 3.537 25 F -0.188 7.188 26 F -0.176 7.176 27 F -0.167 7.167 28 C 0.109 3.891 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.510 7.109 13.032 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.281 6.281 5 C -0.030 4.030 6 C 0.318 3.682 7 O -0.379 6.379 8 N -0.350 5.350 9 C -0.006 4.006 10 C -0.121 4.121 11 H 0.126 0.874 12 C 0.024 3.976 13 N -0.374 5.374 14 C -0.371 4.371 15 H 0.087 0.913 16 C -0.207 4.207 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.167 4.167 23 H 0.148 0.852 24 C 0.408 3.592 25 F -0.170 7.170 26 F -0.157 7.157 27 F -0.148 7.148 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.208 6.255 12.826 23.133 hybrid contribution 0.125 0.367 -0.968 1.043 sum -18.083 6.622 11.858 22.615 Atomic orbital electron populations 1.21695 0.94723 1.02281 1.01922 1.21455 0.95514 0.95443 1.03811 1.22632 0.80544 0.98315 1.00182 1.88020 1.19497 1.25191 1.95406 1.22154 0.91498 0.86893 1.02412 1.19780 0.88127 0.83222 0.77036 1.90785 1.74274 1.25404 1.47459 1.48236 1.07658 1.04591 1.74517 1.22360 0.78569 0.98658 1.00996 1.22829 0.97470 0.92926 0.98889 0.87355 1.21185 0.93574 0.95153 0.87687 1.42314 1.36749 1.53318 1.05032 1.19115 1.12690 1.22031 0.83224 0.91283 1.24725 0.98492 0.99824 0.97689 1.69635 1.21764 1.33598 1.33042 0.86266 0.77175 0.77484 0.85248 1.21268 1.21659 1.21263 1.23614 0.99485 0.92935 1.00663 0.85172 1.20212 0.73972 0.84385 0.80591 1.93175 1.56595 1.79464 1.87745 1.93208 1.50625 1.75366 1.96537 1.93247 1.93208 1.88486 1.39836 1.21904 0.94936 0.81580 1.03059 0.91973 0.92604 0.92503 0.90806 0.90970 0.93269 0.93094 0.90450 0.90198 0.91116 0.87770 0.95411 0.94792 0.78313 0.93418 0.90238 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.12 -1.10 6.30 -26.73 -0.17 -1.27 16 3 C 0.06 0.56 5.94 37.16 0.22 0.78 16 4 O -0.36 -4.97 9.88 -55.14 -0.54 -5.51 16 5 C 0.05 0.58 5.61 36.01 0.20 0.78 16 6 C 0.53 8.38 7.93 -10.98 -0.09 8.29 16 7 O -0.51 -10.60 16.75 -14.36 -0.24 -10.84 16 8 N -0.61 -8.42 3.31 -170.52 -0.57 -8.99 16 9 C 0.12 1.75 6.26 -2.53 -0.02 1.73 16 10 C -0.10 -1.46 2.91 -88.31 -0.26 -1.72 16 11 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.15 2.94 4.07 -4.04 -0.02 2.92 16 13 N -0.73 -18.30 5.20 -59.90 -0.31 -18.61 16 14 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 18 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.15 -1.52 2.91 -88.63 -0.26 -1.78 16 23 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 24 C 0.46 5.48 2.33 37.16 0.09 5.56 16 25 F -0.19 -1.99 17.12 2.25 0.04 -1.95 16 26 F -0.18 -2.31 16.95 2.25 0.04 -2.28 16 27 F -0.17 -2.40 12.37 2.25 0.03 -2.37 16 28 C 0.11 1.08 5.50 -3.06 -0.02 1.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 2.05 7.21 -51.93 -0.37 1.67 16 40 H 0.03 0.57 7.22 -51.93 -0.37 0.20 16 41 H 0.03 0.69 5.90 -51.93 -0.31 0.38 16 42 H 0.38 10.01 7.21 -40.82 -0.29 9.71 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -35.44 377.51 -7.13 -42.57 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.77 Total: 3.75 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.19 Total: 8.42 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.15 Total: -55.40 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.79 Total: -16.35 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.10 Total: -6.59 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.44 -7.13 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717906189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.739 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds